SNP Profiles of "CC 38" View Data

Key

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
1. _NA	CG	GG	AT	GG	CC	TT	CC	TT	CC	TT	CT	AA	GG	AC
2. _NA	CG	GG	AT	GG	CC	TT	CC	TT	CC	TT	CT	AA	GG	AC
3. _NA	CG	GG	AT	GG	CC	TT	CC	TT	CC	TT	CT	AA	GG	AC
4. _8128_3	CG	___	AT	___	___	___	___	___	CC	TT	CT	___	___	AC
5. _8128_6	CG	___	AT	___	___	___	___	___	CC	TT	CT	___	___	AC
6. _8128_7	CG	___	AT	___	___	___	___	___	CC	TT	CT	___	___	AC
7. _Cabiria	CG	___	AT	___	___	___	___	___	CC	TT	CT	___	___	AC
8. _4A_B270_T1	CG	___	AT	___	___	___	___	___	CC	TT	CT	___	___	AC
9. _CC_38_Fld#_45_Plt#_1	CG	___	AT	GG	GG	AA	CC	AA	CC	AA	AG	TT	GG	AC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
1. _NA	CC	AA	GG	CC	AT	AG	GG	AA	TT	GG	AG	TT	CC	AG
2. _NA	CC	AA	GG	CC	AT	AG	GG	AA	TT	GG	AG	TT	CC	AG
3. _NA	CC	AA	GG	CC	AT	AG	GG	AA	TT	GG	AG	TT	CC	AG
4. _8128_3	CC	AA	___	CC	___	___	___	AA	___	___	AG	___	___	AG
5. _8128_6	CC	AA	___	CC	___	___	___	AA	___	___	AG	___	___	AG
6. _8128_7	CC	AA	___	CC	___	___	___	AA	___	___	AG	___	___	AG
7. _Cabiria	CC	AA	___	CC	___	___	___	AA	___	___	AG	___	___	AG
8. _4A_B270_T1	CC	AA	___	CC	___	___	___	AA	___	___	AG	___	___	AG
9. _CC_38_Fld#_45_Plt#_1	GG	AA	GG	GG	AT	AG	GG	AA	AA	GG	AG	TT	GG	___

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
1. _NA	___	AC	CC	TT	AG	GT	AG	CG	AC	CC	AG	TT	GG	AA
2. _NA	___	AC	CC	TT	AG	GT	AG	CG	AC	CC	AG	TT	GG	AA
3. _NA	___	AC	CC	TT	AG	GT	AG	CG	AC	CC	AG	TT	GG	AA
4. _8128_3	___	___	CC	TT	___	GT	___	CG	AC	___	___	TT	GG	___
5. _8128_6	___	___	CC	TT	___	GT	___	CG	AC	___	___	TT	GG	___
6. _8128_7	___	___	CC	TT	___	GT	___	CG	AC	___	___	TT	GG	___
7. _Cabiria	___	___	CC	TT	___	GT	___	CG	AC	___	___	TT	AA	___
8. _4A_B270_T1	___	___	CC	TT	___	GT	___	CG	AC	___	___	TT	AA	___
9. _CC_38_Fld#_45_Plt#_1	AG	AC	CC	___	AG	AC	AG	CG	AC	GG	___	AA	___	GG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
1. _NA	AA	TT	CC	GG	AG	TT	TT	TT	AC	GG	___	GG	CC	CT
2. _NA	AA	TT	CC	GG	AG	TT	TT	TT	AC	GG	___	GG	CC	CT
3. _NA	AA	TT	CC	GG	AG	TT	TT	TT	AC	GG	___	GG	CC	CT
4. _8128_3	___	___	___	GG	___	___	___	___	___	___	___	GG	___	CT
5. _8128_6	___	___	___	GG	___	___	___	___	___	___	___	GG	___	CT
6. _8128_7	___	___	___	GG	___	___	___	___	___	___	___	GG	___	CT
7. _Cabiria	___	___	___	GG	___	___	___	___	___	___	___	GG	___	CT
8. _4A_B270_T1	___	___	___	GG	___	___	___	___	___	___	___	GG	___	CT
9. _CC_38_Fld#_45_Plt#_1	AA	___	___	CC	AG	AA	AA	AA	AC	CC	GG	CC	___	AG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
1. _NA	CG	AG	CT	GG	CC	AT	TT	AG	CT	TT	CC	CC	AA	GG
2. _NA	CG	AG	CT	GG	CC	AT	TT	AG	CT	TT	CC	CC	AA	GG
3. _NA	CG	AG	CT	GG	CC	AT	TT	AG	CT	TT	CC	CC	AA	GG
4. _8128_3	___	___	CT	GG	___	AT	TT	AG	___	___	___	CC	AA	___
5. _8128_6	___	___	CT	GG	___	AT	TT	AG	___	___	___	CC	AA	___
6. _8128_7	___	___	CT	GG	___	AT	TT	AG	___	___	___	CC	AA	___
7. _Cabiria	___	___	CT	GG	___	AT	TT	AG	___	___	___	CC	AA	___
8. _4A_B270_T1	___	___	CT	GG	___	AT	TT	AG	___	___	___	CC	AA	___
9. _CC_38_Fld#_45_Plt#_1	CG	AG	AG	GG	GG	AT	AA	AG	___	AA	___	GG	AA	CC

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
1. _NA	AA	CC	AA	TT	CT	TT	CT	CC	GT	AC	GT	CT	TT	AA
2. _NA	AA	CC	AA	TT	CT	TT	CT	CC	GT	AC	GT	CT	TT	AA
3. _NA	AA	CC	AA	TT	CT	TT	CT	CC	GT	AC	GT	CT	TT	AA
4. _8128_3	AA	___	___	___	CT	___	___	CC	___	___	GT	CT	___	AA
5. _8128_6	AA	___	___	___	CT	___	___	CC	___	___	GT	CT	___	AA
6. _8128_7	AA	___	___	___	CT	___	___	CC	___	___	GT	CT	___	AA
7. _Cabiria	AA	___	___	___	CT	___	___	CC	___	___	GT	CT	___	AA
8. _4A_B270_T1	AA	___	___	___	CC	___	___	CC	___	___	GT	CT	___	AA
9. _CC_38_Fld#_45_Plt#_1	AA	GG	AA	___	___	AA	AG	___	AC	___	AC	AG	AA	AA

	85	86	87	88	89	90	91	92	93	94	95	96
1. _NA	GG	CT	CT	CT	GG	AG	CT	AC	AA	AA	AA	AC	X_X	X_X
2. _NA	GG	CT	CT	CT	GG	AG	CT	AC	AA	AA	AA	AC	X_X	X_X
3. _NA	GG	CT	CT	CT	GG	AG	CT	AC	AA	AA	AA	AC	X_X	X_X
4. _8128_3	___	CT	___	CT	GG	AG	CT	___	___	___	___	___	X_X	X_X
5. _8128_6	___	CT	___	CT	GG	AG	CT	___	___	___	___	___	X_X	X_X
6. _8128_7	___	CT	___	CT	GG	AG	CT	___	___	___	___	___	X_X	X_X
7. _Cabiria	___	CT	___	CT	GG	AG	CT	___	___	___	___	___	X_X	X_X
8. _4A_B270_T1	___	CT	___	CT	GG	AG	CT	___	___	___	___	___	X_X	X_X
9. _CC_38_Fld#_45_Plt#_1	GG	AG	AG	AG	CC	AG	AG	AC	___	AA	AA	AC	X_X	X_X

Key

Mars Center for Cocoa Science Brazil

1._CC_38 NA

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Location: Tree: 3

Notes: 3

Mars, 2018

2._CC_38 NA

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Location: Tree: 6

Notes: 6

Mars, 2018

3._CC_38 NA

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Location: Tree: 7

Notes: 7

Mars, 2018

4._CC_38

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Location: 8128 3

Dapeng Zhang, 2016

Population Assignment:

5._CC_38

Location: 8128 6

6._CC_38

Location: 8128 7

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE) Costa Rica

7._CC_38

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Location: Cabiria

Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

8._CC_38

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Location: 4A B270 T1

Dapeng Zhang, 2016

USDA-TARS United States of America

9._CC_38 CC 38_Fld#_45_Plt#_1

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Location: Field: 45, Tree: 1

Notes: TARS_Cacao_collection

Mars, 2018

Key to SNP Markers

1	TcSNP25	2	TcSNP28	3	TcSNP32	4	TcSNP42	5	TcSNP60
6	TcSNP75	7	TcSNP90	8	TcSNP122	9	TcSNP144	10	TcSNP150
11	TcSNP151	12	TcSNP154	13	TcSNP174	14	TcSNP193	15	TcSNP226
16	TcSNP230	17	TcSNP240	18	TcSNP242	19	TcSNP316	20	TcSNP329
21	TcSNP364	22	TcSNP372	23	TcSNP413	24	TcSNP418	25	TcSNP429
26	TcSNP430	27	TcSNP448	28	TcSNP469	29	TcSNP497	30	TcSNP521
31	TcSNP529	32	TcSNP534	33	TcSNP547	34	TcSNP560	35	TcSNP561
36	TcSNP577	37	TcSNP591	38	TcSNP602	39	TcSNP606	40	TcSNP619
41	TcSNP645	42	TcSNP653	43	TcSNP689	44	TcSNP701	45	TcSNP702
46	TcSNP723	47	TcSNP731	48	TcSNP751	49	TcSNP776	50	TcSNP799
51	TcSNP823	52	TcSNP836	53	TcSNP860	54	TcSNP872	55	TcSNP878
56	TcSNP891	57	TcSNP894	58	TcSNP899	59	TcSNP917	60	TcSNP929
61	TcSNP944	62	TcSNP953	63	TcSNP994	64	TcSNP998	65	TcSNP999
66	TcSNP1034	67	TcSNP1041	68	TcSNP1060	69	TcSNP1062	70	TcSNP1063
71	TcSNP1075	72	TcSNP1096	73	TcSNP1111	74	TcSNP1126	75	TcSNP1144
76	TcSNP1149	77	TcSNP1156	78	TcSNP1165	79	TcSNP1175	80	TcSNP1242
81	TcSNP1253	82	TcSNP1270	83	TcSNP1309	84	TcSNP1350	85	TcSNP1383
86	TcSNP1414	87	TcSNP1439	88	TcSNP1442	89	TcSNP1458	90	TcSNP1484
91	TcSNP1520	92	Tcm001s00947643	93	Tcm002s20575712	94	Tcm003s01336581	95	Tcm003s07402719
96	Tcm006s26664133