SNP Profiles of "CC 10" View Data

Key

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
1. _GC-08-271-8-43	GG	GG	TT	AG	CC	CT	AC	CT	CC	GT	CT	AT	GG	AC
2. _GC-08-271-8-43	GG	GG	TT	AG	CC	CT	AC	CT	CC	GT	CT	AT	GG	AC
3. _GC-08-271-8-43	GG	GG	TT	AG	CC	CT	AC	CT	CC	GT	CT	AT	GG	AC
4. _GC-08-271-8-43	GG	GG	TT	AG	CC	CT	AC	CT	CC	GT	CT	AT	GG	AC
5. _GC-08-271-8-43	GG	GG	TT	AG	CC	CT	AC	CT	CC	GT	CT	AT	GG	AC
6. _8843_1	GG	___	TT	___	___	___	___	___	CC	GT	CT	___	___	AC
7. _8843_2	GG	___	TT	___	___	___	___	___	CC	GT	CT	___	___	AC
8. _8843_5	GG	___	TT	___	___	___	___	___	CC	GT	CT	___	___	AC
9. _8843_7	GG	___	TT	___	___	___	___	___	CC	GT	CT	___	___	AC
10. _8843_9	GG	___	TT	___	___	___	___	___	CC	GT	CT	___	___	AC
11. _Cabiria	GG	___	TT	___	___	___	___	___	CC	GT	___	___	___	AC
12. _Trial_1/Rep_1_45	GG	___	TT	___	___	___	___	___	CC	GT	CT	___	___	AC
13. _CC_10_Fld#_47_Plt#_5	GG	CC	AT	AG	AG	AG	AC	AG	AC	AC	AG	AT	AG	AC
14. _CC_10_Fld#_47A_Plt#_4	GG	CC	AT	AG	AG	AG	AC	AG	AC	AC	AG	AT	AG	AC
15. _CC_10_Fld#_47B_Plt#_2	CG	CC	AT	GG	GG	AG	CC	GG	CC	AC	AA	TT	AG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
1. _GC-08-271-8-43	CG	AG	GG	CT	AT	AG	AG	AT	CT	AG	GG	AT	CG	AG
2. _GC-08-271-8-43	CG	AG	GG	___	AT	AG	AG	AT	CT	AG	GG	AT	CG	AG
3. _GC-08-271-8-43	CG	AG	GG	CT	AT	AG	AG	AT	CT	AG	GG	AT	CG	AG
4. _GC-08-271-8-43	CG	AG	GG	CT	AT	AG	AG	AT	CT	AG	GG	AT	CG	AG
5. _GC-08-271-8-43	CG	AG	GG	CT	AT	AG	AG	AT	CT	AG	GG	AT	CG	AG
6. _8843_1	CG	AG	___	CT	___	___	___	AT	___	___	GG	___	___	AG
7. _8843_2	CG	AG	___	___	___	___	___	AT	___	___	GG	___	___	AG
8. _8843_5	CG	AG	___	CT	___	___	___	AT	___	___	GG	___	___	AG
9. _8843_7	CG	AG	___	CT	___	___	___	AT	___	___	GG	___	___	AG
10. _8843_9	CG	AG	___	CT	___	___	___	AT	___	___	GG	___	___	AG
11. _Cabiria	___	AG	___	CT	___	___	___	___	___	___	GG	___	___	AG
12. _Trial_1/Rep_1_45	CG	AG	___	CT	___	___	___	TT	___	___	GG	___	___	AG
13. _CC_10_Fld#_47_Plt#_5	CG	AG	GG	AG	AT	AG	AG	AT	AG	AG	GG	AT	CG	___
14. _CC_10_Fld#_47A_Plt#_4	CG	AG	GG	AG	AT	AG	AG	AT	AG	AG	GG	AT	CG	___
15. _CC_10_Fld#_47B_Plt#_2	GG	AA	GG	AG	TT	AG	GG	AT	AA	GG	GG	AT	GG	___

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
1. _GC-08-271-8-43	___	CC	CC	CT	GG	TT	AA	CC	AC	CC	AG	CT	GG	AG
2. _GC-08-271-8-43	___	CC	CC	CT	GG	TT	AA	CC	AC	CC	AG	CT	GG	AG
3. _GC-08-271-8-43	___	CC	CC	CT	GG	TT	AA	CC	AC	CC	AG	CT	GG	AG
4. _GC-08-271-8-43	___	CC	CC	CT	GG	TT	AA	CC	AC	CC	AG	CT	GG	AG
5. _GC-08-271-8-43	___	CC	CC	CT	GG	TT	AA	CC	AC	CC	AG	CT	GG	AG
6. _8843_1	___	___	CC	CT	___	TT	___	CC	AC	___	___	CT	GG	___
7. _8843_2	___	___	CC	CT	___	TT	___	CC	AC	___	___	CT	GG	___
8. _8843_5	___	___	CC	CT	___	TT	___	CC	AC	___	___	CT	GG	___
9. _8843_7	___	___	CC	CT	___	TT	___	CC	AC	___	___	CT	GG	___
10. _8843_9	___	___	CC	CT	___	TT	___	CC	AC	___	___	CT	GG	___
11. _Cabiria	___	___	CC	CT	___	TT	___	CC	___	___	___	CT	AG	___
12. _Trial_1/Rep_1_45	___	___	CC	CT	___	TT	___	CC	AC	___	___	CT	AG	___
13. _CC_10_Fld#_47_Plt#_5	AG	CC	CC	___	GG	AC	AA	CC	AC	GG	___	AG	___	AG
14. _CC_10_Fld#_47A_Plt#_4	AG	CC	CC	___	GG	AC	AA	CC	AC	GG	___	AG	___	AG
15. _CC_10_Fld#_47B_Plt#_2	AG	CC	AC	___	AG	AC	AA	CC	AC	AG	___	AA	___	AG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
1. _GC-08-271-8-43	AG	CT	CT	GT	GG	GT	GT	GT	AC	GG	AA	GG	CG	CC
2. _GC-08-271-8-43	AG	CT	CT	GT	GG	GT	GT	GT	AC	GG	AA	GG	CG	CC
3. _GC-08-271-8-43	AG	CT	CT	GT	GG	GT	GT	GT	AC	GG	AA	GG	CG	CC
4. _GC-08-271-8-43	AG	CT	CT	GT	GG	GT	GT	GT	AC	GG	AA	GG	CG	CC
5. _GC-08-271-8-43	AG	CT	CT	GT	GG	GT	GT	GT	AC	GG	AA	GG	CG	CC
6. _8843_1	___	___	___	GT	___	___	___	___	___	___	___	GG	___	CC
7. _8843_2	___	___	___	GT	___	___	___	___	___	___	___	GG	___	CC
8. _8843_5	___	___	___	GT	___	___	___	___	___	___	___	GG	___	CC
9. _8843_7	___	___	___	GT	___	___	___	___	___	___	___	GG	___	CC
10. _8843_9	___	___	___	GT	___	___	___	___	___	___	___	GG	___	CC
11. _Cabiria	___	___	___	GT	___	___	___	___	___	___	___	GG	___	CC
12. _Trial_1/Rep_1_45	___	___	___	GT	___	___	___	___	___	___	___	GG	___	CC
13. _CC_10_Fld#_47_Plt#_5	AG	___	___	AC	AG	AC	AC	AC	AC	CC	AG	CG	___	GG
14. _CC_10_Fld#_47A_Plt#_4	AG	___	___	AC	AG	AC	AC	AC	AC	CC	AG	CG	___	GG
15. _CC_10_Fld#_47B_Plt#_2	AA	___	___	CC	AA	AA	AA	AC	AA	CC	AG	CC	___	GG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
1. _GC-08-271-8-43	CC	AG	TT	GG	CT	AA	CT	AG	CT	TT	CC	CT	AA	GT
2. _GC-08-271-8-43	CC	AG	TT	GG	CT	AA	CT	AG	CT	TT	CC	CT	AA	GT
3. _GC-08-271-8-43	CC	AG	TT	GG	CT	AA	CT	AG	CT	TT	CC	CT	AA	GT
4. _GC-08-271-8-43	CC	AG	TT	GG	CT	AA	CT	AG	CT	TT	CC	CT	AA	GT
5. _GC-08-271-8-43	CC	AG	TT	GG	CT	AA	CT	AG	CT	___	CC	CT	AA	GT
6. _8843_1	___	___	TT	GG	___	AA	CT	AG	___	___	___	CT	AA	___
7. _8843_2	___	___	TT	GG	___	AA	CT	AG	___	___	___	CT	AA	___
8. _8843_5	___	___	TT	GG	___	AA	CT	AG	___	___	___	CT	AA	___
9. _8843_7	___	___	TT	GG	___	AA	CT	AG	___	___	___	CT	AA	___
10. _8843_9	___	___	TT	GG	___	AA	CT	AG	___	___	___	CT	AA	___
11. _Cabiria	___	___	TT	GG	___	AA	CT	AG	___	___	___	CT	AA	___
12. _Trial_1/Rep_1_45	___	___	TT	GG	___	AA	CT	AG	___	___	___	CT	AA	___
13. _CC_10_Fld#_47_Plt#_5	GG	AG	AA	GG	AG	AA	AG	AG	___	AG	___	AG	AA	AC
14. _CC_10_Fld#_47A_Plt#_4	GG	AG	AA	GG	AG	AA	AG	AG	___	AG	___	AG	AA	AC
15. _CC_10_Fld#_47B_Plt#_2	CG	AG	AG	GG	AG	AA	AG	GG	___	AG	___	AG	AG	AC

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
1. _GC-08-271-8-43	AA	CC	AG	AT	CT	TT	TT	CT	GG	CC	GT	CC	TT	AA
2. _GC-08-271-8-43	AA	CC	AG	AT	CT	TT	TT	CT	GG	CC	GT	CC	TT	AA
3. _GC-08-271-8-43	AA	CC	AG	AT	CT	TT	TT	CT	GG	CC	GT	CC	TT	AA
4. _GC-08-271-8-43	AA	CC	AG	AT	CT	TT	TT	CT	GG	CC	GT	CC	TT	AA
5. _GC-08-271-8-43	AA	CC	AG	AT	CT	TT	TT	CT	GG	CC	GT	CC	TT	AA
6. _8843_1	AA	___	___	___	CT	___	___	CT	___	___	GT	CC	___	AA
7. _8843_2	AA	___	___	___	CT	___	___	CT	___	___	GT	CC	___	AA
8. _8843_5	AA	___	___	___	CT	___	___	CT	___	___	GT	CC	___	AA
9. _8843_7	AA	___	___	___	CT	___	___	CT	___	___	GT	CC	___	AA
10. _8843_9	AA	___	___	___	CT	___	___	CT	___	___	GT	CC	___	AA
11. _Cabiria	AA	___	___	___	CT	___	___	CT	___	___	GT	___	___	AA
12. _Trial_1/Rep_1_45	AA	___	___	___	CT	___	___	CT	___	___	GT	CC	___	AA
13. _CC_10_Fld#_47_Plt#_5	AA	GG	AG	___	___	AA	AA	___	AC	___	AA	GG	AG	AA
14. _CC_10_Fld#_47A_Plt#_4	AA	GG	AG	___	___	AA	AA	___	AC	___	AA	GG	AG	AA
15. _CC_10_Fld#_47B_Plt#_2	AA	GG	AG	___	___	AG	AA	___	CC	___	AA	AG	GG	AA

	85	86	87	88	89	90	91	92	93	94	95	96
1. _GC-08-271-8-43	GG	TT	CT	CT	CG	AG	CT	AC	AG	AC	AG	AA	X_X	X_X
2. _GC-08-271-8-43	GG	TT	CT	CT	CG	AG	CT	AC	AG	AC	AG	AA	X_X	X_X
3. _GC-08-271-8-43	GG	TT	CT	CT	CG	AG	CT	AC	AG	AC	AG	AA	X_X	X_X
4. _GC-08-271-8-43	GG	TT	CT	CT	CG	AG	CT	AC	AG	AC	AG	AA	X_X	X_X
5. _GC-08-271-8-43	GG	TT	CT	CT	CG	AG	CT	AC	AG	AC	AG	AA	X_X	X_X
6. _8843_1	___	TT	___	CT	CG	AG	CT	___	___	___	___	___	X_X	X_X
7. _8843_2	___	TT	___	CT	CG	AG	CT	___	___	___	___	___	X_X	X_X
8. _8843_5	___	TT	___	CT	CG	AG	CT	___	___	___	___	___	X_X	X_X
9. _8843_7	___	TT	___	CT	CG	AG	CT	___	___	___	___	___	X_X	X_X
10. _8843_9	___	TT	___	CT	CG	AG	CT	___	___	___	___	___	X_X	X_X
11. _Cabiria	___	TT	___	CT	GG	___	___	___	___	___	___	___	X_X	X_X
12. _Trial_1/Rep_1_45	___	TT	___	CT	GG	AG	CT	___	___	___	___	___	X_X	X_X
13. _CC_10_Fld#_47_Plt#_5	GG	AA	AG	AG	CG	AG	AG	AC	___	AC	AG	AA	X_X	X_X
14. _CC_10_Fld#_47A_Plt#_4	GG	AA	AG	AG	CG	AG	AG	AC	___	AC	AG	AA	X_X	X_X
15. _CC_10_Fld#_47B_Plt#_2	GG	AG	AA	GG	CC	AG	AG	AA	___	CC	AG	AA	X_X	X_X

Key

Mars Center for Cocoa Science Brazil

1._CC_10 GC-08-271-8-43

View Clone Any

Location: Tree: 1

Notes: 1

Mars, 2018

2._CC_10 GC-08-271-8-43

View Clone Any

Location: Tree: 2

Notes: 2

Mars, 2018

3._CC_10 GC-08-271-8-43

View Clone Any

Location: Tree: 5

Notes: 5

Mars, 2018

4._CC_10 GC-08-271-8-43

View Clone Any

Location: Tree: 7

Notes: Dead

Mars, 2018

5._CC_10 GC-08-271-8-43

View Clone Any

Location: Tree: 9

Notes: Dead

Mars, 2018

6._CC_10

View Clone Any

Location: 8843 1

Dapeng Zhang, 2016

Population Assignment:

7._CC_10

Location: 8843 2

8._CC_10

Location: 8843 5

9._CC_10

Location: 8843 7

10._CC_10

Location: 8843 9

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE) Costa Rica

11._CC_10

View Clone Any

Location: Cabiria

Dapeng Zhang, 2016

Malaysian Cocoa Board (MCB) Malaysia

12._CC_10

View Clone Any

Location: Trial 1/Rep 1 45

Dapeng Zhang, 2016

USDA-TARS United States of America

13._CC_10 CC 10_Fld#_47_Plt#_5

View Clone Any

Location: Field: 47, Tree: 5

Notes: TARS_Cacao_collection

Mars, 2018

14._CC_10 CC 10_Fld#_47A_Plt#_4

View Clone Any

Location: Field: 47A, Tree: 4

Mars, 2018

15._CC_10 CC 10_Fld#_47B_Plt#_2

View Clone Any

Location: Field: 47B, Tree: 2

Mars, 2018

Key to SNP Markers

1	TcSNP25	2	TcSNP28	3	TcSNP32	4	TcSNP42	5	TcSNP60
6	TcSNP75	7	TcSNP90	8	TcSNP122	9	TcSNP144	10	TcSNP150
11	TcSNP151	12	TcSNP154	13	TcSNP174	14	TcSNP193	15	TcSNP226
16	TcSNP230	17	TcSNP240	18	TcSNP242	19	TcSNP316	20	TcSNP329
21	TcSNP364	22	TcSNP372	23	TcSNP413	24	TcSNP418	25	TcSNP429
26	TcSNP430	27	TcSNP448	28	TcSNP469	29	TcSNP497	30	TcSNP521
31	TcSNP529	32	TcSNP534	33	TcSNP547	34	TcSNP560	35	TcSNP561
36	TcSNP577	37	TcSNP591	38	TcSNP602	39	TcSNP606	40	TcSNP619
41	TcSNP645	42	TcSNP653	43	TcSNP689	44	TcSNP701	45	TcSNP702
46	TcSNP723	47	TcSNP731	48	TcSNP751	49	TcSNP776	50	TcSNP799
51	TcSNP823	52	TcSNP836	53	TcSNP860	54	TcSNP872	55	TcSNP878
56	TcSNP891	57	TcSNP894	58	TcSNP899	59	TcSNP917	60	TcSNP929
61	TcSNP944	62	TcSNP953	63	TcSNP994	64	TcSNP998	65	TcSNP999
66	TcSNP1034	67	TcSNP1041	68	TcSNP1060	69	TcSNP1062	70	TcSNP1063
71	TcSNP1075	72	TcSNP1096	73	TcSNP1111	74	TcSNP1126	75	TcSNP1144
76	TcSNP1149	77	TcSNP1156	78	TcSNP1165	79	TcSNP1175	80	TcSNP1242
81	TcSNP1253	82	TcSNP1270	83	TcSNP1309	84	TcSNP1350	85	TcSNP1383
86	TcSNP1414	87	TcSNP1439	88	TcSNP1442	89	TcSNP1458	90	TcSNP1484
91	TcSNP1520	92	Tcm001s00947643	93	Tcm002s20575712	94	Tcm003s01336581	95	Tcm003s07402719
96	Tcm006s26664133