SNP Profiles of "HUALLAGA 48"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-01-009-1-09
GGGGTTGGCCTTCCTTCCGTCTATGGAA
2. _GC-01-009-1-09
GGGGTTGGCCTTCCTTCCGTCTATGGAA
3. _GC-01-009-1-09
GGGGTTGGCCTTCCTTCCGTCTATGGAA
4. _GC-01-009-1-09
GGGGTTGGCCTTCCTTCCGTCTATGGAA
5. _GC-01-009-1-09
GGGGTTGGCCTTCCTTCCGTCTATGGAA
6. _GC-01-009-1-09
GGGGTTGGCCTTCCTTCCGTCTATGGAA
7. _GC-01-009-1-09
GGGGTTGGCCTTCCTTCCGTCTATGGAA
8. _GC-01-009-1-09
GGGGTTGGCCTTCCTTCCGTCTATGGAA
9. _GC-01-009-1-09
GGGGTTGGCCTTCCTTCCGTCTATGGAA
10. _GC-01-009-1-09
GGGGTTGGCCTTCCTTCCGTCTATGGAA
11. _1107_2
GG___TT_______________CCGTCT______AA
12. _1107_3
GG___TT_______________CCGTCT______AA
13. _1107_5
GG___TT_______________CCGTCT______AA
14. _1107_8
GG___TT_______________CCGTCT______AA
15. _1107_9
GG___TT_______________CCGTCT______AA
16. _1107_10
GG___TT_______________CCGTCT______AA
17. _1107_11
GG___TT_______________CCGTCT______AA
18. _1107_14
GG___TT_______________CCGTCT______AA
19. _1107_1_>_FP
GG___TT_______________CCGTCT______AA
20. _1107_16_>_F
GG___TT_______________CCGTCT______AA
21. _HUALLAGA_48
GG___TT_______________CCGTCT______AA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-01-009-1-09
GGAGGGCTAAGGGGAACTGGGGAACC___
2. _GC-01-009-1-09
GGAGGGCTAAGGGGAACTGGGGAACCAA
3. _GC-01-009-1-09
GGAGGGCTAAGGGGAACTGGGGAACCAA
4. _GC-01-009-1-09
___AGGGCTAAGGGGAACTGGGGAACCAA
5. _GC-01-009-1-09
GGAGGGCTAAGGGGAACTGGGGAACCAA
6. _GC-01-009-1-09
GGAGGGCTAAGGGG___CTGGGGAACCAA
7. _GC-01-009-1-09
GGAGGGCTAAGGGGAACTGGGGAACCAA
8. _GC-01-009-1-09
GGAGGGCTAAGGGGAACTGGGGAACCAA
9. _GC-01-009-1-09
GGAGGGCTAAGGGGAACTGGGGAACCAA
10. _GC-01-009-1-09
GGAGGGCTAAGGGGAACTGGGGAACCAA
11. _1107_2
GGAG___CT_________AA______GG______AA
12. _1107_3
GGAG___CT_________AA______GG______AA
13. _1107_5
___AG___CT_________AA______GG______AA
14. _1107_8
GGAG___CT_________AA______GG______AA
15. _1107_9
GGAG___CT__________________GG______AA
16. _1107_10
GGAG___CT_________AA______GG______AA
17. _1107_11
GGAG___CT_________AA______GG______AA
18. _1107_14
GGAG___CT_________AA______GG______AA
19. _1107_1_>_FP
GGAG___CT_________AA______GG_________
20. _1107_16_>_F
GGAG___CT_________AA______GG______AA
21. _HUALLAGA_48
GGAG___TT_________AA______GG______AA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-01-009-1-09
AACCCCAGGGGGGGAACCAACCAAAAAG
2. _GC-01-009-1-09
AACCCCAGGGGGGGAACCAACCAAAAAG
3. _GC-01-009-1-09
AACCCCAGGGGGGGAACCAACCAAAAAG
4. _GC-01-009-1-09
AACCCCAGGGGGGGAACCAACCAAAAAG
5. _GC-01-009-1-09
AACCCCAGGGGGGGAACCAACCAAAAAG
6. _GC-01-009-1-09
AACCCCAGGGGGGGAACCAACCAAAAAG
7. _GC-01-009-1-09
AACCCCAGGGGGGGAACCAACCAAAAAG
8. _GC-01-009-1-09
AACCCCAGGGGGGGAACCAACCAAAAAG
9. _GC-01-009-1-09
AACCCCAGGGGGGGAACCAACCAAAAAG
10. _GC-01-009-1-09
AACCCCAGGGGGGGAACCAACCAAAAAG
11. _1107_2
___CCCC___GG___GGAA______CCAA______
12. _1107_3
___CCCC___GG___GGAA______CCAA______
13. _1107_5
___CCCC___GG___GGAA______CCAA______
14. _1107_8
___CCCC___GG___GGAA______CCAA______
15. _1107_9
___CCCC___GG___GGAA______CCAA______
16. _1107_10
___CCCC___GG___GGAA______CCAA______
17. _1107_11
___CCCC___GG___GGAA______CCAA______
18. _1107_14
___CCCC___GG___GGAA______CCAA______
19. _1107_1_>_FP
___CCCC___GG___GGAA______CCAA______
20. _1107_16_>_F
___CCCC___GG___GGAA______CCAA______
21. _HUALLAGA_48
___CCCC___GG___GGAA______CCAA______
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-01-009-1-09
TTCCTTAGTTGGTTACGGCGGGCTCCGG
2. _GC-01-009-1-09
TTCCTTAGTTGGTTACGGCGGGCTCCGG
3. _GC-01-009-1-09
TTCCTTAGTTGGTTACGGCGGGCTCCGG
4. _GC-01-009-1-09
TTCCTTAGTTGGTTACGGCGGGCTCCGG
5. _GC-01-009-1-09
TTCCTTAGTTGGTTACGGCGGGCTCCGG
6. _GC-01-009-1-09
TTCCTTAGTTGGTTACGGCGGGCTCCGG
7. _GC-01-009-1-09
TTCCTTAGTTGGTTACGGCGGGCTCCGG
8. _GC-01-009-1-09
TTCCTTAGTTGGTTACGGCGGGCTCCGG
9. _GC-01-009-1-09
TTCCTTAGTTGGTTACGGCGGGCTCCGG
10. _GC-01-009-1-09
TTCCTTAGTTGGTTACGGCGGGCTCCGG
11. _1107_2
______TT__________________CG___CT______
12. _1107_3
______TT__________________CG___CT______
13. _1107_5
______TT__________________CG___CT______
14. _1107_8
______TT__________________CG___CT______
15. _1107_9
______TT__________________CG___CT______
16. _1107_10
______TT__________________CG___CT______
17. _1107_11
______TT__________________CG___CT______
18. _1107_14
______TT__________________CG___CT______
19. _1107_1_>_FP
______TT__________________CG___CT______
20. _1107_16_>_F
______TT__________________CG___CT______
21. _HUALLAGA_48
______TT__________________CG___CT______
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-01-009-1-09
CTGGCCAACTAGCCTTCGCCGGGGAACC
2. _GC-01-009-1-09
CTGGCCAACTAGCCTTCGCCGGGGAACC
3. _GC-01-009-1-09
CTGGCCAACTAGCCTTCGCCGGGGAACC
4. _GC-01-009-1-09
CTGGCCAACTAGCCTTCGCCGGGGAACC
5. _GC-01-009-1-09
CTGGCCAACTAGCCTTCGCCGGGGAACC
6. _GC-01-009-1-09
CTGG___AACTAGCCTTCGCCGGGGAACC
7. _GC-01-009-1-09
CTGGCCAACTAGCCTTCGCCGGGGAACC
8. _GC-01-009-1-09
CTGGCCAACTAGCCTTCGCCGGGGAACC
9. _GC-01-009-1-09
CTGGCCAACTAGCCTTCGCCGGGGAACC
10. _GC-01-009-1-09
CTGGCCAACTAGCCTTCGCCGGGGAACC
11. _1107_2
CTGG___AACTAG_________CCGG___AA___
12. _1107_3
CTGG___AACTAG_________CCGG___AA___
13. _1107_5
CTGG___AACTAG_________CCGG___AA___
14. _1107_8
CTGG___AACTAG_________CCGG___AA___
15. _1107_9
CTGG___AACTAG_________CCGG___AA___
16. _1107_10
CTGG___AACTAG_________CCGG___AA___
17. _1107_11
CTGG___AACTAG_________CCGG___AA___
18. _1107_14
CTGG___AACTAG_________CCGG___AA___
19. _1107_1_>_FP
CTGG___AACTAG_________CCGG___AA___
20. _1107_16_>_F
CTGG___AACTAG_________CCGG___AA___
21. _HUALLAGA_48
CTGG___AACTAG_________CCGG___AA___
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-01-009-1-09
GGTTCCTTTTCCGGCCGGTTTTACGGTT
2. _GC-01-009-1-09
GGTTCCTTTTCCGGCCGGTTTTACGGTT
3. _GC-01-009-1-09
GGTTCCTTTTCCGGCCGGTTTTACGGTT
4. _GC-01-009-1-09
GGTTCCTTTTCCGGCCGGTTTTACGGTT
5. _GC-01-009-1-09
GGTTCCTTTTCCGGCCGGTTTTACGGTT
6. _GC-01-009-1-09
GGTTCCTTTTCCGGCCGGTTTTACGGTT
7. _GC-01-009-1-09
GGTTCCTTTTCCGGCCGGTTTTACGGTT
8. _GC-01-009-1-09
GGTTCCTTTTCCGGCCGGTTTTACGGTT
9. _GC-01-009-1-09
GGTTCCTTTTCCGGCCGGTTTTACGGTT
10. _GC-01-009-1-09
GGTTCCTTTTCCGGCCGGTTTTACGGTT
11. _1107_2
______CC______CC______GGTT___AC___TT
12. _1107_3
______CC______CC______GGTT___AC___TT
13. _1107_5
______CC______CC______GGTT___AC___TT
14. _1107_8
______CC______CC______GGTT___AC___TT
15. _1107_9
______CC______CC______GGTT___AC___TT
16. _1107_10
______CC______CC______GGTT___AC___TT
17. _1107_11
______CC______CC______GGTT___AC___TT
18. _1107_14
______CC______CC______GGTT___AC___TT
19. _1107_1_>_FP
______CC______CC______GGTT___AC___TT
20. _1107_16_>_F
______CC______CC______GGTT___AC___TT
21. _HUALLAGA_48
______CC______CC______GGTT___AC___TT
 85 86 87 88 89 90 91 92 93 94     
1. _GC-01-009-1-09
CCTTGGAACCCCAACCGGACX_XX_XX_XX_X
2. _GC-01-009-1-09
CCTTGGAACCCCAACCGGACX_XX_XX_XX_X
3. _GC-01-009-1-09
CCTTGGAACCCCAACCGGACX_XX_XX_XX_X
4. _GC-01-009-1-09
CCTTGGAACCCCAACCGGACX_XX_XX_XX_X
5. _GC-01-009-1-09
CCTTGGAACCCCAACCGGACX_XX_XX_XX_X
6. _GC-01-009-1-09
CCTTGGAACCCCAACCGGACX_XX_XX_XX_X
7. _GC-01-009-1-09
CCTTGGAACCCCAACCGGACX_XX_XX_XX_X
8. _GC-01-009-1-09
CCTTGGAACCCCAACCGG___X_XX_XX_XX_X
9. _GC-01-009-1-09
CCTTGGAACCCCAACCGGACX_XX_XX_XX_X
10. _GC-01-009-1-09
CCTTGGAACCCCAACCGGACX_XX_XX_XX_X
11. _1107_2
___TTGGAACC_______________X_XX_XX_XX_X
12. _1107_3
___TTGGAACC_______________X_XX_XX_XX_X
13. _1107_5
___TTGGAACC_______________X_XX_XX_XX_X
14. _1107_8
___TTGGAACC_______________X_XX_XX_XX_X
15. _1107_9
___TTGGAACC_______________X_XX_XX_XX_X
16. _1107_10
___TTGGAACC_______________X_XX_XX_XX_X
17. _1107_11
___TTGGAACC_______________X_XX_XX_XX_X
18. _1107_14
___TTGGAACC_______________X_XX_XX_XX_X
19. _1107_1_>_FP
___TTGGAACC_______________X_XX_XX_XX_X
20. _1107_16_>_F
___TTGGAACC_______________X_XX_XX_XX_X
21. _HUALLAGA_48
___TTGGAGCC_______________X_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._HUALLAGA_48 GC-01-009-1-09
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018
2._HUALLAGA_48 GC-01-009-1-09
Location: Tree: 2
Notes: 2
 Mars, 2018
3._HUALLAGA_48 GC-01-009-1-09
Location: Tree: 3
Notes: 3
 Mars, 2018
4._HUALLAGA_48 GC-01-009-1-09
Location: Tree: 5
Notes: 5
 Mars, 2018
5._HUALLAGA_48 GC-01-009-1-09
Location: Tree: 8
Notes: 8
 Mars, 2018
6._HUALLAGA_48 GC-01-009-1-09
Location: Tree: 9
Notes: 9
 Mars, 2018
7._HUALLAGA_48 GC-01-009-1-09
Location: Tree: 10
Notes: 10
 Mars, 2018
8._HUALLAGA_48 GC-01-009-1-09
Location: Tree: 11
Notes: 11
 Mars, 2018
9._HUALLAGA_48 GC-01-009-1-09
Location: Tree: 14
Notes: 14
 Mars, 2018
10._HUALLAGA_48 GC-01-009-1-09
Location: Tree: 16
Notes: 16 > FP3
 Mars, 2018
11._HUALLAGA_48
Location: 1107 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
12._HUALLAGA_48
Location: 1107 3
 Dapeng Zhang, 2016
13._HUALLAGA_48
Location: 1107 5
 Dapeng Zhang, 2016
14._HUALLAGA_48
Location: 1107 8
 Dapeng Zhang, 2016
15._HUALLAGA_48
Location: 1107 9
 Dapeng Zhang, 2016
16._HUALLAGA_48
Location: 1107 10
 Dapeng Zhang, 2016
17._HUALLAGA_48
Location: 1107 11
 Dapeng Zhang, 2016
18._HUALLAGA_48
Location: 1107 14
 Dapeng Zhang, 2016
19._HUALLAGA_48
Location: 1107 1 > FP
 Dapeng Zhang, 2016
20._HUALLAGA_48
Location: 1107 16 > F
 Dapeng Zhang, 2016

PERICT

21._HUALLAGA_48
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP25 2TcSNP28 3TcSNP32 4TcSNP42 5TcSNP60
6TcSNP75 7TcSNP90 8TcSNP122 9TcSNP144 10TcSNP150
11TcSNP151 12TcSNP154 13TcSNP174 14TcSNP193 15TcSNP226
16TcSNP230 17TcSNP240 18TcSNP242 19TcSNP316 20TcSNP329
21TcSNP364 22TcSNP372 23TcSNP413 24TcSNP418 25TcSNP429
26TcSNP430 27TcSNP448 28TcSNP469 29TcSNP521 30TcSNP529
31TcSNP534 32TcSNP547 33TcSNP560 34TcSNP561 35TcSNP577
36TcSNP591 37TcSNP602 38TcSNP606 39TcSNP619 40TcSNP645
41TcSNP653 42TcSNP689 43TcSNP701 44TcSNP702 45TcSNP723
46TcSNP731 47TcSNP751 48TcSNP776 49TcSNP799 50TcSNP823
51TcSNP836 52TcSNP872 53TcSNP878 54TcSNP891 55TcSNP894
56TcSNP899 57TcSNP917 58TcSNP929 59TcSNP944 60TcSNP953
61TcSNP994 62TcSNP998 63TcSNP999 64TcSNP1034 65TcSNP1041
66TcSNP1060 67TcSNP1062 68TcSNP1063 69TcSNP1075 70TcSNP1096
71TcSNP1111 72TcSNP1126 73TcSNP1144 74TcSNP1149 75TcSNP1156
76TcSNP1165 77TcSNP1175 78TcSNP1242 79TcSNP1253 80TcSNP1270
81TcSNP1309 82TcSNP1350 83TcSNP1383 84TcSNP1414 85TcSNP1439
86TcSNP1442 87TcSNP1458 88TcSNP1484 89TcSNP1520 90Tcm001s00947643
91Tcm002s20575712 92Tcm003s01336581 93Tcm003s07402719 94Tcm006s26664133