SNP Profiles matching MO 9

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_Input profile	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
1._MO_9	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
2._GC-05-119-3-21	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
3._MO_9	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
4._MO_9	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
5._MO_9	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
6._MO_9	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
7._GC-05-071-2-22	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
8._GC-05-071-2-22	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
9._GC-05-119-3-21	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
10._GC-05-119-3-21	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
11._IMC_41	CC	GG	CG	CC	TT	__	CC	TT	CC	CC	AA	GG	CC	AG
12._RUQ_32	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
13._PA_56_[PER]	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
14._IMC_41	CC	GG	CG	CC	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
15._IMC_41	CC	GG	CG	CC	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
16._IMC_41	CC	GG	CG	CC	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
17._GC-08-275-8-47	CC	GG	CG	CC	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
18._GC-08-275-8-47	CC	GG	CG	CC	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
19._GC-08-275-8-47	CC	GG	CG	CC	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
20._IMC_41	CC	GG	CG	CC	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
21._IMC_41	CC	GG	CG	CC	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
22._GC-08-275-8-47	CC	GG	CG	CC	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
23._GC-08-275-8-47	CC	GG	CG	CC	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
24._PA_72_[PER]	CT	AG	GG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
25._PA_72_[PER]	CT	AG	GG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
26._MARPER_42	CC	GG	CG	CC	__	AC	CC	__	CC	__	AA	GG	__	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC
1._MO_9	CT	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC
2._GC-05-119-3-21	CT	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC
3._MO_9	CT	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC
4._MO_9	CT	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC
5._MO_9	CT	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC
6._MO_9	CT	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC
7._GC-05-071-2-22	CT	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC
8._GC-05-071-2-22	CT	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC
9._GC-05-119-3-21	CT	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC
10._GC-05-119-3-21	CT	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC
11._IMC_41	CT	AA	GG	CT	CC	GG	GG	AA	TT	__	GG	GT	CC	AA
12._RUQ_32	CT	AA	GG	CT	CC	GG	GG	AA	TT	CC	CG	GT	CT	AC
13._PA_56_[PER]	CT	AA	GG	CT	CC	GG	GG	AA	TT	CC	CG	GT	CT	AC
14._IMC_41	CT	AA	GG	CT	CC	GG	GG	AA	TT	AC	GG	GT	CC	AA
15._IMC_41	CT	AA	GG	CT	CC	GG	GG	AA	TT	AC	GG	GT	CC	AA
16._IMC_41	CT	AA	GG	CT	CC	GG	GG	AA	TT	AC	GG	GT	CC	AA
17._GC-08-275-8-47	CT	AA	GG	CT	CC	GG	GG	AA	TT	AC	GG	GT	CC	AA
18._GC-08-275-8-47	CT	AA	GG	CT	CC	GG	GG	AA	TT	AC	GG	GT	CC	AA
19._GC-08-275-8-47	CT	AA	GG	CT	CC	GG	GG	AA	TT	AC	GG	GT	CC	AA
20._IMC_41	CT	AA	GG	CT	CC	GG	GG	AA	TT	AC	GG	GT	CC	AA
21._IMC_41	CT	AA	GG	CT	CC	GG	GG	AA	TT	AC	GG	GT	CC	AA
22._GC-08-275-8-47	CT	AA	GG	CT	CC	GG	GG	AA	TT	AC	GG	GT	CC	AA
23._GC-08-275-8-47	CT	AA	GG	CT	CC	GG	GG	AA	TT	AC	GG	GT	CC	AA
24._PA_72_[PER]	CT	AA	GG	CT	CC	GG	GG	AA	TT	CC	CG	GT	CT	AC
25._PA_72_[PER]	CT	AA	GG	CT	CC	GG	__	AA	TT	CC	CG	GT	CT	AC
26._MARPER_42	CT	AA	GG	__	CC	__	GG	AA	TT	__	GG	__	CC	AA

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	AA	GG	AA	CC	AA	AC	CC	GT	AC	AA	GG	X_X	X_X	X_X
1._MO_9	AA	GG	AA	CC	AA	__	CC	GT	AC	AA	GG	X_X	X_X	X_X
2._GC-05-119-3-21	AA	GG	AA	CC	AA	__	CC	GT	AC	AA	GG	X_X	X_X	X_X
3._MO_9	AA	GG	AA	CC	AA	AA	CC	GT	AC	AA	GG	X_X	X_X	X_X
4._MO_9	AA	GG	AA	CC	AA	AA	CC	GT	AC	AA	GG	X_X	X_X	X_X
5._MO_9	AA	GG	AA	CC	AA	AA	CC	GT	AC	AA	GG	X_X	X_X	X_X
6._MO_9	AA	GG	AA	CC	AA	AA	CC	GT	AC	AA	GG	X_X	X_X	X_X
7._GC-05-071-2-22	AA	GG	AA	CC	AA	AA	CC	GT	AC	AA	GG	X_X	X_X	X_X
8._GC-05-071-2-22	AA	GG	AA	CC	AA	AA	CC	GT	AC	AA	GG	X_X	X_X	X_X
9._GC-05-119-3-21	AA	GG	AA	CC	AA	AA	CC	GT	AC	AA	GG	X_X	X_X	X_X
10._GC-05-119-3-21	AA	GG	AA	CC	AA	AA	CC	GT	AC	AA	GG	X_X	X_X	X_X
11._IMC_41	AA	GG	AA	CC	AA	AC	CC	GT	AC	AA	GG	X_X	X_X	X_X
12._RUQ_32	AA	GG	AA	CC	AG	AC	CC	GG	CC	AA	GG	X_X	X_X	X_X
13._PA_56_[PER]	AA	GG	AA	CC	AG	AC	CC	GG	CC	AA	GG	X_X	X_X	X_X
14._IMC_41	AA	GG	AA	CC	AA	__	CC	GT	AC	AA	GG	X_X	X_X	X_X
15._IMC_41	AA	GG	AA	CC	AA	__	CC	GT	AC	AA	GG	X_X	X_X	X_X
16._IMC_41	AA	GG	AA	CC	AA	__	CC	GT	AC	AA	GG	X_X	X_X	X_X
17._GC-08-275-8-47	AA	GG	AA	CC	AA	__	CC	GT	AC	AA	GG	X_X	X_X	X_X
18._GC-08-275-8-47	AA	GG	AA	CC	AA	__	CC	GT	AC	AA	GG	X_X	X_X	X_X
19._GC-08-275-8-47	AA	GG	AA	CC	AA	__	CC	GT	AC	AA	GG	X_X	X_X	X_X
20._IMC_41	AA	GG	AA	CC	AA	AA	CC	GT	AC	AA	GG	X_X	X_X	X_X
21._IMC_41	AA	GG	AA	CC	AA	AA	CC	GT	AC	AA	GG	X_X	X_X	X_X
22._GC-08-275-8-47	AA	GG	AA	CC	AA	AA	CC	GT	AC	AA	GG	X_X	X_X	X_X
23._GC-08-275-8-47	AA	GG	AA	CC	AA	AA	CC	GT	AC	AA	GG	X_X	X_X	X_X
24._PA_72_[PER]	AA	GG	AA	CC	AG	AC	CC	GT	AC	AA	GG	X_X	X_X	X_X
25._PA_72_[PER]	AA	GG	AA	CC	AG	AC	CC	GT	AC	AA	GG	X_X	X_X	X_X
26._MARPER_42	AA	GG	__	CC	AA	__	__	GT	__	AA	__	X_X	X_X	X_X

Input profile: MO_9

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D835

Dapeng Zhang, 2016

1._MO_9

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5321 3 > FP

Dapeng Zhang, 2016

2._MO_9 GC-05-119-3-21

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

3._MO_9

98.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5321 4 > FP

Dapeng Zhang, 2016

4._MO_9

98.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5321 2

Dapeng Zhang, 2016

5._MO_9

98.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5222 1 > FP

Dapeng Zhang, 2016

6._MO_9

98.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5222 5

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

7._MO_9 GC-05-071-2-22

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

8._MO_9 GC-05-071-2-22

98.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

9._MO_9 GC-05-119-3-21

98.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

10._MO_9 GC-05-119-3-21

98.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

11._IMC_41

93.2 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F418 T1

Dapeng Zhang, 2016

12._PA_56_[PER] RUQ_32

92.3 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

13._PA_56_[PER]

92.3 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D 238

Dapeng Zhang, 2016

14._IMC_41

92.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8847 3

Dapeng Zhang, 2016

15._IMC_41

92.1 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8847 2

Dapeng Zhang, 2016

16._IMC_41

92.1 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8847 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

17._IMC_41 GC-08-275-8-47

92.1 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

18._IMC_41 GC-08-275-8-47

92.1 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

19._IMC_41 GC-08-275-8-47

92.1 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

20._IMC_41

91 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8847 5

Dapeng Zhang, 2016

21._IMC_41

91 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8847 4

Dapeng Zhang, 2016

22._IMC_41 GC-08-275-8-47

91 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

23._IMC_41 GC-08-275-8-47

91 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

24._PA_72_[PER]

91 %
39 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D 633

Dapeng Zhang, 2016

25._PA_72_[PER]

90.8 %
38 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 633

Dapeng Zhang, 2014

26._MARPER_42

90.4 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 713

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25