SNP Profiles matching MO 9

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
CCGGCGCTTTACCCTTCCCCAAGGCCAG
1._MO_9
CCGGCGCTTTACCCTTCCCCAAGGCCAG
2._GC-05-119-3-21
CCGGCGCTTTACCCTTCCCCAAGGCCAG
3._MO_9
CCGGCGCTTTACCCTTCCCCAAGGCCAG
4._MO_9
CCGGCGCTTTACCCTTCCCCAAGGCCAG
5._MO_9
CCGGCGCTTTACCCTTCCCCAAGGCCAG
6._MO_9
CCGGCGCTTTACCCTTCCCCAAGGCCAG
7._GC-05-071-2-22
CCGGCGCTTTACCCTTCCCCAAGGCCAG
8._GC-05-071-2-22
CCGGCGCTTTACCCTTCCCCAAGGCCAG
9._GC-05-119-3-21
CCGGCGCTTTACCCTTCCCCAAGGCCAG
10._GC-05-119-3-21
CCGGCGCTTTACCCTTCCCCAAGGCCAG
11._IMC_41
CCGGCGCCTT_CCTTCCCCAAGGCCAG
12._RUQ_32
CCGGCGCTTTACCCTTCCCCAAGGCCAG
13._PA_56_[PER]
CCGGCGCTTTACCCTTCCCCAAGGCCAG
14._IMC_41
CCGGCGCCTTACCCTTCCCCAAGGCCAG
15._IMC_41
CCGGCGCCTTACCCTTCCCCAAGGCCAG
16._IMC_41
CCGGCGCCTTACCCTTCCCCAAGGCCAG
17._GC-08-275-8-47
CCGGCGCCTTACCCTTCCCCAAGGCCAG
18._GC-08-275-8-47
CCGGCGCCTTACCCTTCCCCAAGGCCAG
19._GC-08-275-8-47
CCGGCGCCTTACCCTTCCCCAAGGCCAG
20._IMC_41
CCGGCGCCTTACCCTTCCCCAAGGCCAG
21._IMC_41
CCGGCGCCTTACCCTTCCCCAAGGCCAG
22._GC-08-275-8-47
CCGGCGCCTTACCCTTCCCCAAGGCCAG
23._GC-08-275-8-47
CCGGCGCCTTACCCTTCCCCAAGGCCAG
24._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
25._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
26._MARPER_42
CCGGCGCC-ACCC-CC-AAGG-AG
 1516171819202122232425262728
_Input profile
CTAACGCTCCGGGGAATTCCGGGTCTCC
1._MO_9
CTAACGCTCCGGGGAATTCCGGGTCTCC
2._GC-05-119-3-21
CTAACGCTCCGGGGAATTCCGGGTCTCC
3._MO_9
CTAACGCTCCGGGGAATTCCGGGTCTCC
4._MO_9
CTAACGCTCCGGGGAATTCCGGGTCTCC
5._MO_9
CTAACGCTCCGGGGAATTCCGGGTCTCC
6._MO_9
CTAACGCTCCGGGGAATTCCGGGTCTCC
7._GC-05-071-2-22
CTAACGCTCCGGGGAATTCCGGGTCTCC
8._GC-05-071-2-22
CTAACGCTCCGGGGAATTCCGGGTCTCC
9._GC-05-119-3-21
CTAACGCTCCGGGGAATTCCGGGTCTCC
10._GC-05-119-3-21
CTAACGCTCCGGGGAATTCCGGGTCTCC
11._IMC_41
CTAAGGCTCCGGGGAATT_GGGTCCAA
12._RUQ_32
CTAAGGCTCCGGGGAATTCCCGGTCTAC
13._PA_56_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
14._IMC_41
CTAAGGCTCCGGGGAATTACGGGTCCAA
15._IMC_41
CTAAGGCTCCGGGGAATTACGGGTCCAA
16._IMC_41
CTAAGGCTCCGGGGAATTACGGGTCCAA
17._GC-08-275-8-47
CTAAGGCTCCGGGGAATTACGGGTCCAA
18._GC-08-275-8-47
CTAAGGCTCCGGGGAATTACGGGTCCAA
19._GC-08-275-8-47
CTAAGGCTCCGGGGAATTACGGGTCCAA
20._IMC_41
CTAAGGCTCCGGGGAATTACGGGTCCAA
21._IMC_41
CTAAGGCTCCGGGGAATTACGGGTCCAA
22._GC-08-275-8-47
CTAAGGCTCCGGGGAATTACGGGTCCAA
23._GC-08-275-8-47
CTAAGGCTCCGGGGAATTACGGGTCCAA
24._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
25._PA_72_[PER]
CTAAGGCTCCGG-AATTCCCGGTCTAC
26._MARPER_42
CTAAGG-CC-GGAATT-GG-CCAA
 2930313233343536373839   
_Input profile
AAGGAACCAAACCCGTACAAGGX_XX_XX_X
1._MO_9
AAGGAACCAA_CCGTACAAGGX_XX_XX_X
2._GC-05-119-3-21
AAGGAACCAA_CCGTACAAGGX_XX_XX_X
3._MO_9
AAGGAACCAAAACCGTACAAGGX_XX_XX_X
4._MO_9
AAGGAACCAAAACCGTACAAGGX_XX_XX_X
5._MO_9
AAGGAACCAAAACCGTACAAGGX_XX_XX_X
6._MO_9
AAGGAACCAAAACCGTACAAGGX_XX_XX_X
7._GC-05-071-2-22
AAGGAACCAAAACCGTACAAGGX_XX_XX_X
8._GC-05-071-2-22
AAGGAACCAAAACCGTACAAGGX_XX_XX_X
9._GC-05-119-3-21
AAGGAACCAAAACCGTACAAGGX_XX_XX_X
10._GC-05-119-3-21
AAGGAACCAAAACCGTACAAGGX_XX_XX_X
11._IMC_41
AAGGAACCAAACCCGTACAAGGX_XX_XX_X
12._RUQ_32
AAGGAACCAGACCCGGCCAAGGX_XX_XX_X
13._PA_56_[PER]
AAGGAACCAGACCCGGCCAAGGX_XX_XX_X
14._IMC_41
AAGGAACCAA_CCGTACAAGGX_XX_XX_X
15._IMC_41
AAGGAACCAA_CCGTACAAGGX_XX_XX_X
16._IMC_41
AAGGAACCAA_CCGTACAAGGX_XX_XX_X
17._GC-08-275-8-47
AAGGAACCAA_CCGTACAAGGX_XX_XX_X
18._GC-08-275-8-47
AAGGAACCAA_CCGTACAAGGX_XX_XX_X
19._GC-08-275-8-47
AAGGAACCAA_CCGTACAAGGX_XX_XX_X
20._IMC_41
AAGGAACCAAAACCGTACAAGGX_XX_XX_X
21._IMC_41
AAGGAACCAAAACCGTACAAGGX_XX_XX_X
22._GC-08-275-8-47
AAGGAACCAAAACCGTACAAGGX_XX_XX_X
23._GC-08-275-8-47
AAGGAACCAAAACCGTACAAGGX_XX_XX_X
24._PA_72_[PER]
AAGGAACCAGACCCGTACAAGGX_XX_XX_X
25._PA_72_[PER]
AAGGAACCAGACCCGTACAAGGX_XX_XX_X
26._MARPER_42
AAGG-CCAA--GT-AA-X_XX_XX_X

Input profile: MO_9

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D835
 Dapeng Zhang, 2016

1._MO_9

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 3 > FP
 Dapeng Zhang, 2016

2._MO_9 GC-05-119-3-21

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

3._MO_9

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 4 > FP
 Dapeng Zhang, 2016

4._MO_9

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 2
 Dapeng Zhang, 2016

5._MO_9

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 1 > FP
 Dapeng Zhang, 2016

6._MO_9

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

7._MO_9 GC-05-071-2-22

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._MO_9 GC-05-071-2-22

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

9._MO_9 GC-05-119-3-21

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._MO_9 GC-05-119-3-21

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

11._IMC_41

93.2 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F418 T1
 Dapeng Zhang, 2016

12._PA_56_[PER] RUQ_32

92.3 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

13._PA_56_[PER]

92.3 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 238
 Dapeng Zhang, 2016

14._IMC_41

92.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 3
 Dapeng Zhang, 2016

15._IMC_41

92.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 2
 Dapeng Zhang, 2016

16._IMC_41

92.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

17._IMC_41 GC-08-275-8-47

92.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

18._IMC_41 GC-08-275-8-47

92.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

19._IMC_41 GC-08-275-8-47

92.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

20._IMC_41

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 5
 Dapeng Zhang, 2016

21._IMC_41

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 4
 Dapeng Zhang, 2016

22._IMC_41 GC-08-275-8-47

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

23._IMC_41 GC-08-275-8-47

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

24._PA_72_[PER]

91 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 633
 Dapeng Zhang, 2016

25._PA_72_[PER]

90.8 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 633
 Dapeng Zhang, 2014

26._MARPER_42

90.4 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 713
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25