SNP Profiles matching RUQ 233 (MIS_GBRRUQ_MO 20)

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 Key

 1234567891011121314
_Input profile
CTCCCCGTCTGGACCCAGCTAGAGAACC
1._RUQ_235
--CC-TTGG-CC-CT---CC
2._MO_20
__ACGTCT_ACCCAGCT__AA_
3._MO_20
__ACGTCT_ACCCAGCT__AA_
4._MO_20
__ACGTCT_ACCCAGCT__AA_
5._MO_20
__ACGTCT_ACCCAGCT__AA_
6._MO_20
__ACGTCT_ACCCAGCT__AA_
7._MO_20
__ACGTCT_ACCCAGCT__AA_
8._MO_20
__ACGTCT_ACCCAGCT__AA_
9._MO_20
__ACGTCT_ACCCAGCT__AA_
10._MO_20
__ACGTCT_ACCCAGCT__AA_
11._MO_20
__ACGTCT_ACCCAGCT__AA_
12._SPA_9_[COL]
__ACGTCT_ACCCAGCT__AA_
13._SPA_9_[COL]
__ACGTCT_ACCCAGCT__AA_
14._SPA_9_[COL]
__ACGTCT_ACCCAGCT__AA_
15._SPA_9_[COL]
__ACGTCT_ACCCAGCT__AA_
16._SPA_9_[COL]
__ACGTCT_ACCCAGCT__AA_
17._SPA_9_[COL]
__ACGTCT_ACCCAGCT__AA_
18._MO_20
__ACGTCT_ACCCAGCT__AA_
19._SPA_9_[COL]
__ACGT__ACCCAGCT__AA_
20._SPA_9_[COL]
__ACGT__ACCCAGCT__AA_
21._RUQ_235
__ACGTCT_ACCCAGCT__AA_
22._GC-01-121-6-18
CTCCACGTCTGGACCCAGCTAGAGAACG
23._GC-01-121-6-18
CTCCACGTCTGGACCCAGCTAGAGAACG
24._GC-01-121-6-18
CTCCACGTCTGGACCCAGCTAGAGAACG
25._GC-01-121-6-18
CTCCACGTCTGGACCCAGCTAGAGAACG
26._GC-01-121-6-18
CTCCACGTCTGGACCCAGCTAGAGAACG
27._GC-08-167-4-10
CTCCACGTCTGGACCCAGCTAGAGAACG
28._GC-08-167-4-10
CTCCACGTCTGGACCCAGCTAGAGAACG
29._GC-01-099-5-16
CTCCACGTCTGGACCCAGCTAGAGAACG
30._GC-01-099-5-16
CTCCACGTCTGGACCCAGCTAGAGAACG
31._GC-01-099-5-16
CTCCACGTCTGGACCCAGCTAGAGAACG
32._GC-01-099-5-16
CTCCACGTCTGGACCCAGCTAGAGAACG
33._GC-01-099-5-16
CTCCACGTCTGGACCCAGCTAGAGAACG
34._GC-01-099-5-16
CTCCACGTCTGGACCCAGCTAGAGAACG
35._GC-01-121-6-18
CTCCACGTCTGGACCCAGCTAGAGAACG
36._GC-08-167-4-10
_CCACGTCTGGACCCAGCTAGAGAACG
37._GC-08-167-4-10
_CCACGTCTGGACCCAGCTAGAGAACG
38._GC-01-099-5-16
CTCCACGT_GGACCCAGCTAGAGAACG
39._GC-01-099-5-16
CTCCACGT_GGACCCAGCTAGAGAACG
 1516171819202122232425262728
_Input profile
AGACCTGTCGCCCTTTTTGGAGTTCCCG
1._RUQ_235
AGAC-GTCG-CTTT-GGAG-CCCG
2._MO_20
AGACCTGTCGCC_TT_GG___CG
3._MO_20
AGACCTGTCGCC_TT_GG___CG
4._MO_20
AGACCTGTCGCC_TT_GG___CG
5._MO_20
AGACCTGTCGCC_TT_GG___CG
6._MO_20
AGACCTGTCGCC_TT_GG___CG
7._MO_20
AGACCTGTCGCC_TT_GG___CG
8._MO_20
AGACCTGTCGCC_TT_GG___CG
9._MO_20
AGACCTGTCGCC_TT_GG___CG
10._MO_20
AGACCTGTCGCC_TT_GG___CG
11._MO_20
AGACCTGTCGCC_TT_GG___CG
12._SPA_9_[COL]
AGACCTGTCGCC_TT_GG___CG
13._SPA_9_[COL]
AGACCTGTCGCC_TT_GG___CG
14._SPA_9_[COL]
AGACCTGTCGCC_TT_GG___CG
15._SPA_9_[COL]
AGACCTGTCGCC_TT_GG___CG
16._SPA_9_[COL]
AGACCTGTCGCC_TT_GG___CG
17._SPA_9_[COL]
AGACCTGTCGCC_TT_GG___CG
18._MO_20
AGACCTGTCGCC_TT_GG___CG
19._SPA_9_[COL]
AGACCTGTCGCC_TT_GG___CG
20._SPA_9_[COL]
AGACCTGTCGCC_TT_GG___CG
21._RUQ_235
AGACCTGTCGCC_TT_GG___CG
22._GC-01-121-6-18
AGACCTGTCGCCCTTTCTGGAGTTCCCG
23._GC-01-121-6-18
AGACCTGTCGCCCTTTCTGGAGTTCCCG
24._GC-01-121-6-18
AGACCTGTCGCCCTTTCTGGAGTTCCCG
25._GC-01-121-6-18
AGACCTGTCGCCCTTTCTGGAGTTCCCG
26._GC-01-121-6-18
AGACCTGTCGCCCTTTCTGGAGTTCCCG
27._GC-08-167-4-10
AGACCTGTCGCCCTTTCTGGAGTTCCCG
28._GC-08-167-4-10
AGACCTGTCGCCCTTTCTGGAGTTCCCG
29._GC-01-099-5-16
AGACCTGTCGCCCTTTCTGGAGTTCCCG
30._GC-01-099-5-16
AGACCTGTCGCCCTTTCTGGAGTTCCCG
31._GC-01-099-5-16
AGACCTGTCGCCCTTTCTGGAGTTCCCG
32._GC-01-099-5-16
AGACCTGTCGCCCTTTCTGGAGTTCCCG
33._GC-01-099-5-16
AGACCTGTCGCCCTTTCTGGAGTTCCCG
34._GC-01-099-5-16
AGACCTGTCGCCCTTTCTGGAGTTCCCG
35._GC-01-121-6-18
AGACCTGTCGCCCTTTCTGGAGTTCCCG
36._GC-08-167-4-10
AGACCTGTCGCCCTTTCTGGAGTTCCCG
37._GC-08-167-4-10
AGACCTGTCGCCCTTTCTGGAGTTCCCG
38._GC-01-099-5-16
AGACCTGTCGCCCTTTCTGGAGTTCCCG
39._GC-01-099-5-16
AGACCTGTCGCCCTTTCTGGAGTTCCCG
 2930313233343536373839404142
_Input profile
CGTTGGAACCCTGTAGATGTCTCTTTCC
1._RUQ_235
CG--AACC-GTAGATGTCTCTTTCC
2._MO_20
_CT_AA_CT___GT__TTCC
3._MO_20
_CT_AA_CT___GT__TTCC
4._MO_20
_CT_AA_CT___GT__TTCC
5._MO_20
_CT_AA_CT___GT__TTCC
6._MO_20
_CT_AA_CT___GT__TTCC
7._MO_20
_CT_AA_CT___GT__TTCC
8._MO_20
_CT_AA_CT___GT__TTCC
9._MO_20
_CT_AA_CT___GT__TTCC
10._MO_20
_CT_AA_CT___GT__TTCC
11._MO_20
_CT_AA_CT___GT__TTCC
12._SPA_9_[COL]
_CT_AA_CT___GT__TTCC
13._SPA_9_[COL]
_CT_AA_CT___GT__TTCC
14._SPA_9_[COL]
_CT_AA_CT___GT__TTCC
15._SPA_9_[COL]
_CT_AA_CT___GT__TTCC
16._SPA_9_[COL]
_CT_AA_CT___GT__TTCC
17._SPA_9_[COL]
_CT_AA_CT___GT__TTCC
18._MO_20
_CT_AA_CT___GT__TTCC
19._SPA_9_[COL]
_CT_AA_CT___GT__TTCC
20._SPA_9_[COL]
_CT_AA_CT___GT__TTCC
21._RUQ_235
_CT_AA_CT___GT__TTCC
22._GC-01-121-6-18
CGCTAGAACCCTGTAGATGTTTCTTTCC
23._GC-01-121-6-18
CGCTAGAACCCTGTAGATGTTTCTTTCC
24._GC-01-121-6-18
CGCTAGAACCCTGTAGATGTTTCTTTCC
25._GC-01-121-6-18
CGCTAGAACCCTGTAGATGTTTCTTTCC
26._GC-01-121-6-18
CGCTAGAACCCTGTAGATGTTTCTTTCC
27._GC-08-167-4-10
CGCTAGAACCCTGTAGATGTTTCTTTCC
28._GC-08-167-4-10
CGCTAGAACCCTGTAGATGTTTCTTTCC
29._GC-01-099-5-16
CGCTAGAACCCTGTAGATGTTTCTTTCC
30._GC-01-099-5-16
CGCTAGAACCCTGTAGATGTTTCTTTCC
31._GC-01-099-5-16
CGCTAGAACCCTGTAGATGTTTCTTTCC
32._GC-01-099-5-16
CGCTAGAACCCTGTAGATGTTTCTTTCC
33._GC-01-099-5-16
CGCTAGAACCCTGTAGATGTTTCTTTCC
34._GC-01-099-5-16
CGCTAGAACCCTGTAGATGTTTCTTTCC
35._GC-01-121-6-18
CGCTAGAACCCTGTAGATGTTT_TTCC
36._GC-08-167-4-10
CGCTAGAACCCTGTAGATGTTTCTTTCC
37._GC-08-167-4-10
CGCTAGAACCCTGTAGATGTTTCTTTCC
38._GC-01-099-5-16
CGCTAGAACCCTGTAGATGTTTCTTTCC
39._GC-01-099-5-16
CGCTAGAACCCTGTAGATGTTTCTTTCC
 43             
_Input profile
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_235
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._MO_20
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._MO_20
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._MO_20
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._MO_20
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._MO_20
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._MO_20
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._MO_20
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._MO_20
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._MO_20
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._MO_20
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._SPA_9_[COL]
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._SPA_9_[COL]
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._SPA_9_[COL]
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._SPA_9_[COL]
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._SPA_9_[COL]
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._SPA_9_[COL]
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._MO_20
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._SPA_9_[COL]
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._SPA_9_[COL]
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._RUQ_235
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GC-01-121-6-18
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._GC-01-121-6-18
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._GC-01-121-6-18
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._GC-01-121-6-18
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._GC-01-121-6-18
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._GC-08-167-4-10
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._GC-08-167-4-10
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._GC-01-099-5-16
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
30._GC-01-099-5-16
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
31._GC-01-099-5-16
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
32._GC-01-099-5-16
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
33._GC-01-099-5-16
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
34._GC-01-099-5-16
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
35._GC-01-121-6-18
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
36._GC-08-167-4-10
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
37._GC-08-167-4-10
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
38._GC-01-099-5-16
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
39._GC-01-099-5-16
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: RUQ_233 RUQ_233

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._SPA_9_[COL] RUQ_235

98.2 %
28 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._MO_20

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 4
 Dapeng Zhang, 2016

3._MO_20

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 3
 Dapeng Zhang, 2016

4._MO_20

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 2
 Dapeng Zhang, 2016

5._MO_20

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 1
 Dapeng Zhang, 2016

6._MO_20

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 4 > FP
 Dapeng Zhang, 2016

7._MO_20

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 2 > FP
 Dapeng Zhang, 2016

8._MO_20

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 10 > F
 Dapeng Zhang, 2016

9._MO_20

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 1 > FP
 Dapeng Zhang, 2016

10._MO_20

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 11
 Dapeng Zhang, 2016

11._MO_20

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 9
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

12._SPA_9_[COL]

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1516 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

13._SPA_9_[COL]

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1516 3
 Dapeng Zhang, 2016

14._SPA_9_[COL]

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1516 5
 Dapeng Zhang, 2016

15._SPA_9_[COL]

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1516 1 > FP
 Dapeng Zhang, 2016

16._SPA_9_[COL]

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1516 14 > F
 Dapeng Zhang, 2016

17._SPA_9_[COL]

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1516 6 > FP
 Dapeng Zhang, 2016

18._MO_20

95.8 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B D238 T2
 Dapeng Zhang, 2016

19._SPA_9_[COL]

95.7 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1516 4
 Dapeng Zhang, 2016

20._SPA_9_[COL]

95.7 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1516 9 > FP
 Dapeng Zhang, 2016

21._SPA_9_[COL] RUQ_235

93.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._MO_20 GC-01-121-6-18

93 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

23._MO_20 GC-01-121-6-18

93 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

24._MO_20 GC-01-121-6-18

93 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

25._MO_20 GC-01-121-6-18

93 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

26._MO_20 GC-01-121-6-18

93 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

27._MO_20 GC-08-167-4-10

93 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

28._MO_20 GC-08-167-4-10

93 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

29._SPA_9_[COL] GC-01-099-5-16

93 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

30._SPA_9_[COL] GC-01-099-5-16

93 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

31._SPA_9_[COL] GC-01-099-5-16

93 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

32._SPA_9_[COL] GC-01-099-5-16

93 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

33._SPA_9_[COL] GC-01-099-5-16

93 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

34._SPA_9_[COL] GC-01-099-5-16

93 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

35._MO_20 GC-01-121-6-18

92.9 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

36._MO_20 GC-08-167-4-10

92.9 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

37._MO_20 GC-08-167-4-10

92.9 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

38._SPA_9_[COL] GC-01-099-5-16

92.9 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

39._SPA_9_[COL] GC-01-099-5-16

92.9 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP899 32TcSNP998 33TcSNP999 34TcSNP1060 35TcSNP1063
36TcSNP1111 37TcSNP1126 38TcSNP1253 39TcSNP1309 40TcSNP1439
41TcSNP1442 42TcSNP1458 43TcSNP1484