SNP Profiles of "SPA 9 [COL]"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-01-099-5-16
______CGGTAT___GG______CCCTCCCT___
2. _GC-01-099-5-16
______CGGTAT___GG______CCCTCCCT___
3. _GC-01-099-5-16
______CGGTAT___GG______CCCTCCCT___
4. _GC-01-099-5-16
______CGGTAT___GG______CCCTCCCT___
5. _GC-01-099-5-16
______CGGTAT___GG______CCCTCCCT___
6. _GC-01-099-5-16
______CGGTAT___GG______CCCTCCCT___
7. _GC-01-099-5-16
______CGGTAT___GG______CCCTCCCT___
8. _GC-01-099-5-16
______CGGTAT___GG______CCCTCCCT___
9. _1516_2
______CG___AT___________________________
10. _1516_3
______CG___AT___________________________
11. _1516_4
______CG___AT___________________________
12. _1516_5
______CG___AT___________________________
13. _1516_1_>_FP
______CG___AT___________________________
14. _1516_14_>_F
______CG___AT___________________________
15. _1516_6_>_FP
______CG___AT___________________________
16. _1516_9_>_FP
______CG___AT___________________________
17. _RUQ_235
CTAC_________CT___CCGG____________TT
18. _RUQ_235
______CGACAT___GG______GGAGCCAG___
19. _RUQ_235
__________________________________________
20. _RUQ_235
______CG___AT___________________________
21. _CAMPUS_2_X1_Y17
______GG___TT___________________________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-01-099-5-16
___ACGTCTATGG______AC___CCAGGGCT
2. _GC-01-099-5-16
___ACGTCTATGG______AC___CCAGGGCT
3. _GC-01-099-5-16
___ACGTCTATGG______AC___CCAGGGCT
4. _GC-01-099-5-16
___ACGT___ATGG______AC___CCAGGGCT
5. _GC-01-099-5-16
___ACGTCTATGG______AC___CCAGGGCT
6. _GC-01-099-5-16
___ACGTCTATGG______AC___CCAGGGCT
7. _GC-01-099-5-16
___ACGT___ATGG______AC___CCAGGGCT
8. _GC-01-099-5-16
___ACGTCTATGG______AC___CCAGGGCT
9. _1516_2
___ACGTCT____________AC___CCAG___CT
10. _1516_3
___ACGTCT____________AC___CCAG___CT
11. _1516_4
___ACGT_______________AC___CCAG___CT
12. _1516_5
___ACGTCT____________AC___CCAG___CT
13. _1516_1_>_FP
___ACGTCT____________AC___CCAG___CT
14. _1516_14_>_F
___ACGTCT____________AC___CCAG___CT
15. _1516_6_>_FP
___ACGTCT____________AC___CCAG___CT
16. _1516_9_>_FP
___ACGT_______________AC___CCAG___CT
17. _RUQ_235
ATAC____________CTAA___GT___AG______
18. _RUQ_235
______ACAGATGG______AC___GGAGGGAG
19. _RUQ_235
___CC___TT___GG____________CC______CT
20. _RUQ_235
___ACGTCT____________AC___CCAG___CT
21. _CAMPUS_2_X1_Y17
___ACGGCT____________AC___CGAA___CT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-01-099-5-16
______AAAG___AGAACCAA___GGATCGAG
2. _GC-01-099-5-16
______AAAG___AGAACCAA___GGATCGAG
3. _GC-01-099-5-16
______AAAG___AGAA___AA___GGATCGAG
4. _GC-01-099-5-16
______AAAG___AGAACCAA___GGATCGAG
5. _GC-01-099-5-16
______AAAG___AGAACCAA___GGATCGAG
6. _GC-01-099-5-16
______AAAG___AGAACCAA___GGATCGAG
7. _GC-01-099-5-16
______AAAG___AGAACCAA___GGATCGAG
8. _GC-01-099-5-16
______AAAG___AGAACCAA___GGATCGAG
9. _1516_2
__________________AA_________GG______AG
10. _1516_3
__________________AA_________GG______AG
11. _1516_4
__________________AA_________GG______AG
12. _1516_5
__________________AA_________GG______AG
13. _1516_1_>_FP
__________________AA_________GG______AG
14. _1516_14_>_F
__________________AA_________GG______AG
15. _1516_6_>_FP
__________________AA_________GG______AG
16. _1516_9_>_FP
__________________AA_________GG______AG
17. _RUQ_235
TTAA___AGAC____________CC____________
18. _RUQ_235
______TTAG___AGAAGGAA___GGATCG___
19. _RUQ_235
____________________________________CCAG
20. _RUQ_235
__________________AA_________GG______AG
21. _CAMPUS_2_X1_Y17
__________________AA_________GG______AA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-01-099-5-16
______AC___ACCT___AGGTAGCG___CCCT
2. _GC-01-099-5-16
______AC___ACCT___AGGTAGCG___CCCT
3. _GC-01-099-5-16
______AC___ACCT___AGGTAGCG___CCCT
4. _GC-01-099-5-16
______AC___ACCT___AGGTAGCG___CCCT
5. _GC-01-099-5-16
______AC___ACCT___AGGTAGCG___CCCT
6. _GC-01-099-5-16
______AC___ACCT___AGGTAGCG___CCCT
7. _GC-01-099-5-16
______AC___ACCT___AGGTAGCG___CCCT
8. _GC-01-099-5-16
______AC___ACCT___AGGTAGCG___CCCT
9. _1516_2
____________ACCT______GT___CG___CC___
10. _1516_3
____________ACCT______GT___CG___CC___
11. _1516_4
____________ACCT______GT___CG___CC___
12. _1516_5
____________ACCT______GT___CG___CC___
13. _1516_1_>_FP
____________ACCT______GT___CG___CC___
14. _1516_14_>_F
____________ACCT______GT___CG___CC___
15. _1516_6_>_FP
____________ACCT______GT___CG___CC___
16. _1516_9_>_FP
____________ACCT______GT___CG___CC___
17. _RUQ_235
___AC___CTAC___AG_________CGAACCCT
18. _RUQ_235
AG___AC___AC______AGACAGCG___CCAG
19. _RUQ_235
____________AC_________GT___CG______CT
20. _RUQ_235
____________ACCT______GT___CG___CC___
21. _CAMPUS_2_X1_Y17
____________CCTT______GG___GG___AA___
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-01-099-5-16
GGTT_________AAAG___AGTTCTGGAG___
2. _GC-01-099-5-16
GGTT_________AAAG___AGTTCTGGAG___
3. _GC-01-099-5-16
GGTT_________AAAG___AGTTCTGGAG___
4. _GC-01-099-5-16
GGTT_________AAAG___AGTTCTGGAG___
5. _GC-01-099-5-16
GGTT_________AAAG___AGTTCTGGAG___
6. _GC-01-099-5-16
GGTT_________AAAG___AGTTCTGGAG___
7. _GC-01-099-5-16
GGTT_________AAAG___AGTTCTGGAG___
8. _GC-01-099-5-16
GGTT_________AAAG___AGTTCTGGAG___
9. _1516_2
___TT_________AA_______________GG______
10. _1516_3
___TT_________AA_______________GG______
11. _1516_4
___TT_________AA_______________GG______
12. _1516_5
___TT_________AA_______________GG______
13. _1516_1_>_FP
___TT_________AA_______________GG______
14. _1516_14_>_F
___TT_________AA_______________GG______
15. _1516_6_>_FP
___TT_________AA_______________GG______
16. _1516_9_>_FP
___TT_________AA_______________GG______
17. _RUQ_235
______TTAGCGAA___CG______TTGGAGCT
18. _RUQ_235
___AA____________AA___AG______CCAG___
19. _RUQ_235
___TT___________________________GGAG___
20. _RUQ_235
___TT_________AA_______________GG______
21. _CAMPUS_2_X1_Y17
___CC_________AA_______________GG______
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-01-099-5-16
TTGGTT___CC___CGAACGCGCTCCAGCT
2. _GC-01-099-5-16
TTGGTT___CC___CGAACGCGCTCCAGCT
3. _GC-01-099-5-16
TTGGTT___CC___CGAACGCGCTCCAGCT
4. _GC-01-099-5-16
TTGGTT___CC___CGAACGCGCTCCAGCT
5. _GC-01-099-5-16
TTGGTT___CC___CGAACGCGCTCCAGCT
6. _GC-01-099-5-16
TTGGTT___CC___CGAACGCGCTCCAGCT
7. _GC-01-099-5-16
TTGGTT___CC___CGAACGCGCTCCAGCT
8. _GC-01-099-5-16
TTGGTT___CC___CGAACGCGCTCCAGCT
9. _1516_2
________________________CG___CT______CT
10. _1516_3
________________________CG___CT______CT
11. _1516_4
________________________CG___CT______CT
12. _1516_5
________________________CG___CT______CT
13. _1516_1_>_FP
________________________CG___CT______CT
14. _1516_14_>_F
________________________CG___CT______CT
15. _1516_6_>_FP
________________________CG___CT______CT
16. _1516_9_>_FP
________________________CG___CT______CT
17. _RUQ_235
_________TTCCATCT___CG_________AG___
18. _RUQ_235
AACCAA___CC___CGAACG___AGGGAGAG
19. _RUQ_235
____________CC_________CGCG____________
20. _RUQ_235
________________________CG___CT______CT
21. _CAMPUS_2_X1_Y17
________________________CG___CC______CC
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1. _GC-01-099-5-16
CGCT___ATCTAACC______TTCC___CTAG
2. _GC-01-099-5-16
CGCT___ATCTAACC______TTCC___CTAG
3. _GC-01-099-5-16
CGCT___ATCTAACC______TTCC___CTAG
4. _GC-01-099-5-16
CGCT___ATCTAACC______TTCC___CTAG
5. _GC-01-099-5-16
CGCT___ATCTAACC______TTCC___CTAG
6. _GC-01-099-5-16
CGCT___ATCTAACC______TTCC___CTAG
7. _GC-01-099-5-16
CGCT___ATCTAACC______TTCC___CTAG
8. _GC-01-099-5-16
CGCT___ATCTAACC______TTCC___CTAG
9. _1516_2
CG______ATCTAA__________________CTAG
10. _1516_3
CG______ATCTAA__________________CTAG
11. _1516_4
CG______ATCTAA__________________CTAG
12. _1516_5
CG______ATCTAA__________________CTAG
13. _1516_1_>_FP
CG______ATCTAA__________________CTAG
14. _1516_14_>_F
CG______ATCTAA__________________CTAG
15. _1516_6_>_FP
CG______ATCTAA__________________CTAG
16. _1516_9_>_FP
CG______ATCTAA__________________CTAG
17. _RUQ_235
______GG______AACCTTAA______CT___AG
18. _RUQ_235
CGAG___ATAGAA_________AA______AGAG
19. _RUQ_235
_______________AACC_____________________
20. _RUQ_235
CG______ATCTAA__________________CTAG
21. _CAMPUS_2_X1_Y17
GG______AATTAG__________________CCGG
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1. _GC-01-099-5-16
GTAACTAG___ATCTCTCTCTGT______AC
2. _GC-01-099-5-16
GTAACTAG___ATCTCTCTCTGT______AC
3. _GC-01-099-5-16
GTAACTAG___ATCTCTCTCTGT______AC
4. _GC-01-099-5-16
GTAACTAG___ATCTCTCTCTGT______AC
5. _GC-01-099-5-16
GTAACTAG___ATCTCTCTCTGT______AC
6. _GC-01-099-5-16
GTAACTAG___ATCTCTCTCTGT______AC
7. _GC-01-099-5-16
GTAACTAG___ATCTCTCTCTGT______AC
8. _GC-01-099-5-16
GTAACTAG___ATCTCTCTCTGT______AC
9. _1516_2
___AA____________CT______CT____________
10. _1516_3
___AA____________CT______CT____________
11. _1516_4
___AA____________CT______CT____________
12. _1516_5
___AA____________CT______CT____________
13. _1516_1_>_FP
___AA____________CT______CT____________
14. _1516_14_>_F
___AA____________CT______CT____________
15. _1516_6_>_FP
___AA____________CT______CT____________
16. _1516_9_>_FP
___AA____________CT______CT____________
17. _RUQ_235
____________TT___CT____________GTAA___
18. _RUQ_235
ACAAAGAG_________AGAG___AC_________
19. _RUQ_235
GT______AG___AT________________________
20. _RUQ_235
___AA____________CT______CT____________
21. _CAMPUS_2_X1_Y17
___AA____________CC______CC____________
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1. _GC-01-099-5-16
GTCT______TTACAG______CTCTTTCCAA
2. _GC-01-099-5-16
GTCT______TTACAG______CTCTTTCCAA
3. _GC-01-099-5-16
GTCT______TTACAG______CTCTTTCCAA
4. _GC-01-099-5-16
GTCT______TTACAG______CTCTTTCCAA
5. _GC-01-099-5-16
GTCT______TTACAG______CTCTTTCCAA
6. _GC-01-099-5-16
GTCT______TTACAG______CTCTTTCCAA
7. _GC-01-099-5-16
GTCT______TTACAG______CTCTTTCCAA
8. _GC-01-099-5-16
GTCT______TTACAG______CTCTTTCCAA
9. _1516_2
GTCT_________AC_________CT___TTCCAA
10. _1516_3
GTCT_________AC_________CT___TTCCAA
11. _1516_4
GTCT_________AC_________CT___TTCCAA
12. _1516_5
GTCT_________AC_________CT___TTCCAA
13. _1516_1_>_FP
GTCT_________AC_________CT___TTCCAA
14. _1516_14_>_F
GTCT_________AC_________CT___TTCCAA
15. _1516_6_>_FP
GTCT_________AC_________CT___TTCCAA
16. _1516_9_>_FP
GTCT_________AC_________CT___TTCCAA
17. _RUQ_235
GT___GTTT_________AGAG_________CC___
18. _RUQ_235
ACAG______AGACAG______AGAGAAGGAA
19. _RUQ_235
GT_________CT_______________CTTTCCAA
20. _RUQ_235
GTCT_________AC_________CT___TTCCAG
21. _CAMPUS_2_X1_Y17
GTTT_________AC_________TT___TTCGAA
 127 128 129 130 131 132 133 134       
1. _GC-01-099-5-16
CT______CCAGACGGACX_XX_XX_XX_XX_XX_X
2. _GC-01-099-5-16
CT______CCAGACGGACX_XX_XX_XX_XX_XX_X
3. _GC-01-099-5-16
CT______CCAGACGGACX_XX_XX_XX_XX_XX_X
4. _GC-01-099-5-16
CT______CCAGACGGACX_XX_XX_XX_XX_XX_X
5. _GC-01-099-5-16
CT______CCAGACGGACX_XX_XX_XX_XX_XX_X
6. _GC-01-099-5-16
CT______CCAGACGGACX_XX_XX_XX_XX_XX_X
7. _GC-01-099-5-16
CT______CCAGACGGACX_XX_XX_XX_XX_XX_X
8. _GC-01-099-5-16
CT______CCAGACGGACX_XX_XX_XX_XX_XX_X
9. _1516_2
CT_____________________X_XX_XX_XX_XX_XX_X
10. _1516_3
CT_____________________X_XX_XX_XX_XX_XX_X
11. _1516_4
CT_____________________X_XX_XX_XX_XX_XX_X
12. _1516_5
CT_____________________X_XX_XX_XX_XX_XX_X
13. _1516_1_>_FP
CT_____________________X_XX_XX_XX_XX_XX_X
14. _1516_14_>_F
CT_____________________X_XX_XX_XX_XX_XX_X
15. _1516_6_>_FP
CT_____________________X_XX_XX_XX_XX_XX_X
16. _1516_9_>_FP
CT_____________________X_XX_XX_XX_XX_XX_X
17. _RUQ_235
___CTAA_______________X_XX_XX_XX_XX_XX_X
18. _RUQ_235
AG______CC___ACGGACX_XX_XX_XX_XX_XX_X
19. _RUQ_235
________________________X_XX_XX_XX_XX_XX_X
20. _RUQ_235
CT_____________________X_XX_XX_XX_XX_XX_X
21. _CAMPUS_2_X1_Y17
CC_____________________X_XX_XX_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._SPA_9_[COL] GC-01-099-5-16
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018
2._SPA_9_[COL] GC-01-099-5-16
Location: Tree: 2
Notes: 2
 Mars, 2018
3._SPA_9_[COL] GC-01-099-5-16
Location: Tree: 3
Notes: 3
 Mars, 2018
4._SPA_9_[COL] GC-01-099-5-16
Location: Tree: 4
Notes: 4
 Mars, 2018
5._SPA_9_[COL] GC-01-099-5-16
Location: Tree: 5
Notes: 5
 Mars, 2018
6._SPA_9_[COL] GC-01-099-5-16
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018
7._SPA_9_[COL] GC-01-099-5-16
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018
8._SPA_9_[COL] GC-01-099-5-16
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018
9._SPA_9_[COL]
Location: 1516 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
10._SPA_9_[COL]
Location: 1516 3
 Dapeng Zhang, 2016
11._SPA_9_[COL]
Location: 1516 4
 Dapeng Zhang, 2016
12._SPA_9_[COL]
Location: 1516 5
 Dapeng Zhang, 2016
13._SPA_9_[COL]
Location: 1516 1 > FP
 Dapeng Zhang, 2016
14._SPA_9_[COL]
Location: 1516 14 > F
 Dapeng Zhang, 2016
15._SPA_9_[COL]
Location: 1516 6 > FP
 Dapeng Zhang, 2016
16._SPA_9_[COL]
Location: 1516 9 > FP
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

17._SPA_9_[COL] RUQ 235
 Lambert Motilal, 2023
18._SPA_9_[COL] RUQ 235
Notes: Reading_Collection
 Mars, 2018
19._SPA_9_[COL] RUQ 235
 Dapeng Zhang, 2014
20._SPA_9_[COL] RUQ 235
 Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

21._SPA_9_[COL]
Location: CAMPUS 2 X1 Y17
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP52 10TcSNP60
11TcSNP75 12TcSNP90 13TcSNP122 14TcSNP131 15TcSNP143
16TcSNP144 17TcSNP150 18TcSNP151 19TcSNP154 20TcSNP174
21TcSNP176 22TcSNP189 23TcSNP193 24TcSNP194 25TcSNP226
26TcSNP230 27TcSNP240 28TcSNP242 29TcSNP290 30TcSNP305
31TcSNP316 32TcSNP329 33TcSNP363 34TcSNP364 35TcSNP372
36TcSNP413 37TcSNP418 38TcSNP421 39TcSNP429 40TcSNP430
41TcSNP448 42TcSNP469 43TcSNP497 44TcSNP519 45TcSNP521
46TcSNP522 47TcSNP529 48TcSNP534 49TcSNP546 50TcSNP547
51TcSNP560 52TcSNP561 53TcSNP577 54TcSNP589 55TcSNP591
56TcSNP602 57TcSNP606 58TcSNP619 59TcSNP640 60TcSNP642
61TcSNP644 62TcSNP645 63TcSNP653 64TcSNP660 65TcSNP689
66TcSNP701 67TcSNP702 68TcSNP723 69TcSNP731 70TcSNP739
71TcSNP751 72TcSNP776 73TcSNP799 74TcSNP800 75TcSNP823
76TcSNP835 77TcSNP836 78TcSNP860 79TcSNP872 80TcSNP878
81TcSNP891 82TcSNP894 83TcSNP899 84TcSNP917 85TcSNP929
86TcSNP944 87TcSNP945 88TcSNP953 89TcSNP994 90TcSNP998
91TcSNP999 92TcSNP1010 93TcSNP1019 94TcSNP1034 95TcSNP1041
96TcSNP1053 97TcSNP1060 98TcSNP1062 99TcSNP1063 100TcSNP1075
101TcSNP1096 102TcSNP1111 103TcSNP1112 104TcSNP1126 105TcSNP1144
106TcSNP1149 107TcSNP1156 108TcSNP1165 109TcSNP1175 110TcSNP1205
111TcSNP1230 112TcSNP1242 113TcSNP1253 114TcSNP1270 115TcSNP1275
116TcSNP1293 117TcSNP1309 118TcSNP1350 119TcSNP1383 120TcSNP1401
121TcSNP1404 122TcSNP1414 123TcSNP1439 124TcSNP1442 125TcSNP1458
126TcSNP1484 127TcSNP1520 128TcSNP1524 129TcSNP1527 130Tcm001s00947643
131Tcm002s20575712 132Tcm003s01336581 133Tcm003s07402719 134Tcm006s26664133