SNP Profiles of SPA 9 [COL]   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1._SPA 9 [COL]___
______CGGTAT___GG______CCCTCCCT___
2._SPA 9 [COL]___
______CGGTAT___GG______CCCTCCCT___
3._SPA 9 [COL]___
______CGGTAT___GG______CCCTCCCT___
4._SPA 9 [COL]___
______CGGTAT___GG______CCCTCCCT___
5._SPA 9 [COL]___
______CGGTAT___GG______CCCTCCCT___
6._SPA 9 [COL]___
______CGGTAT___GG______CCCTCCCT___
7._SPA 9 [COL]___
______CGGTAT___GG______CCCTCCCT___
8._SPA 9 [COL]___
______CGGTAT___GG______CCCTCCCT___
9._SPA 9 [COL]___
______CG___AT___________________________
10._SPA 9 [COL]___
______CG___AT___________________________
11._SPA 9 [COL]___
______CG___AT___________________________
12._SPA 9 [COL]___
______CG___AT___________________________
13._SPA 9 [COL]___
______CG___AT___________________________
14._SPA 9 [COL]___
______CG___AT___________________________
15._SPA 9 [COL]___
______CG___AT___________________________
16._SPA 9 [COL]___
______CG___AT___________________________
17._SPA 9 [COL]___
CTAC_________CT___CCGG____________TT
18._SPA 9 [COL]___
______CGACAT___GG______GGAGCCAG___
19._SPA 9 [COL]___
__________________________________________
20._SPA 9 [COL]___
______CG___AT___________________________
21._SPA 9 [COL]___
______GG___TT___________________________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1._SPA 9 [COL]___
___ACGTCTATGG______AC___CCAGGGCT
2._SPA 9 [COL]___
___ACGTCTATGG______AC___CCAGGGCT
3._SPA 9 [COL]___
___ACGTCTATGG______AC___CCAGGGCT
4._SPA 9 [COL]___
___ACGT___ATGG______AC___CCAGGGCT
5._SPA 9 [COL]___
___ACGTCTATGG______AC___CCAGGGCT
6._SPA 9 [COL]___
___ACGTCTATGG______AC___CCAGGGCT
7._SPA 9 [COL]___
___ACGT___ATGG______AC___CCAGGGCT
8._SPA 9 [COL]___
___ACGTCTATGG______AC___CCAGGGCT
9._SPA 9 [COL]___
___ACGTCT____________AC___CCAG___CT
10._SPA 9 [COL]___
___ACGTCT____________AC___CCAG___CT
11._SPA 9 [COL]___
___ACGT_______________AC___CCAG___CT
12._SPA 9 [COL]___
___ACGTCT____________AC___CCAG___CT
13._SPA 9 [COL]___
___ACGTCT____________AC___CCAG___CT
14._SPA 9 [COL]___
___ACGTCT____________AC___CCAG___CT
15._SPA 9 [COL]___
___ACGTCT____________AC___CCAG___CT
16._SPA 9 [COL]___
___ACGT_______________AC___CCAG___CT
17._SPA 9 [COL]___
ATAC____________CTAA___GT___AG______
18._SPA 9 [COL]___
______ACAGATGG______AC___GGAGGGAG
19._SPA 9 [COL]___
___CC___TT___GG____________CC______CT
20._SPA 9 [COL]___
___ACGTCT____________AC___CCAG___CT
21._SPA 9 [COL]___
___ACGGCT____________AC___CGAA___CT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1._SPA 9 [COL]___
______AAAG___AGAACCAA___GGATCGAG
2._SPA 9 [COL]___
______AAAG___AGAACCAA___GGATCGAG
3._SPA 9 [COL]___
______AAAG___AGAA___AA___GGATCGAG
4._SPA 9 [COL]___
______AAAG___AGAACCAA___GGATCGAG
5._SPA 9 [COL]___
______AAAG___AGAACCAA___GGATCGAG
6._SPA 9 [COL]___
______AAAG___AGAACCAA___GGATCGAG
7._SPA 9 [COL]___
______AAAG___AGAACCAA___GGATCGAG
8._SPA 9 [COL]___
______AAAG___AGAACCAA___GGATCGAG
9._SPA 9 [COL]___
__________________AA_________GG______AG
10._SPA 9 [COL]___
__________________AA_________GG______AG
11._SPA 9 [COL]___
__________________AA_________GG______AG
12._SPA 9 [COL]___
__________________AA_________GG______AG
13._SPA 9 [COL]___
__________________AA_________GG______AG
14._SPA 9 [COL]___
__________________AA_________GG______AG
15._SPA 9 [COL]___
__________________AA_________GG______AG
16._SPA 9 [COL]___
__________________AA_________GG______AG
17._SPA 9 [COL]___
TTAA___AGAC____________CC____________
18._SPA 9 [COL]___
______TTAG___AGAAGGAA___GGATCG___
19._SPA 9 [COL]___
____________________________________CCAG
20._SPA 9 [COL]___
__________________AA_________GG______AG
21._SPA 9 [COL]___
__________________AA_________GG______AA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1._SPA 9 [COL]___
______AC___ACCT___AGGTAGCG___CCCT
2._SPA 9 [COL]___
______AC___ACCT___AGGTAGCG___CCCT
3._SPA 9 [COL]___
______AC___ACCT___AGGTAGCG___CCCT
4._SPA 9 [COL]___
______AC___ACCT___AGGTAGCG___CCCT
5._SPA 9 [COL]___
______AC___ACCT___AGGTAGCG___CCCT
6._SPA 9 [COL]___
______AC___ACCT___AGGTAGCG___CCCT
7._SPA 9 [COL]___
______AC___ACCT___AGGTAGCG___CCCT
8._SPA 9 [COL]___
______AC___ACCT___AGGTAGCG___CCCT
9._SPA 9 [COL]___
____________ACCT______GT___CG___CC___
10._SPA 9 [COL]___
____________ACCT______GT___CG___CC___
11._SPA 9 [COL]___
____________ACCT______GT___CG___CC___
12._SPA 9 [COL]___
____________ACCT______GT___CG___CC___
13._SPA 9 [COL]___
____________ACCT______GT___CG___CC___
14._SPA 9 [COL]___
____________ACCT______GT___CG___CC___
15._SPA 9 [COL]___
____________ACCT______GT___CG___CC___
16._SPA 9 [COL]___
____________ACCT______GT___CG___CC___
17._SPA 9 [COL]___
___AC___CTAC___AG_________CGAACCCT
18._SPA 9 [COL]___
AG___AC___AC______AGACAGCG___CCAG
19._SPA 9 [COL]___
____________AC_________GT___CG______CT
20._SPA 9 [COL]___
____________ACCT______GT___CG___CC___
21._SPA 9 [COL]___
____________CCTT______GG___GG___AA___
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1._SPA 9 [COL]___
GGTT_________AAAG___AGTTCTGGAG___
2._SPA 9 [COL]___
GGTT_________AAAG___AGTTCTGGAG___
3._SPA 9 [COL]___
GGTT_________AAAG___AGTTCTGGAG___
4._SPA 9 [COL]___
GGTT_________AAAG___AGTTCTGGAG___
5._SPA 9 [COL]___
GGTT_________AAAG___AGTTCTGGAG___
6._SPA 9 [COL]___
GGTT_________AAAG___AGTTCTGGAG___
7._SPA 9 [COL]___
GGTT_________AAAG___AGTTCTGGAG___
8._SPA 9 [COL]___
GGTT_________AAAG___AGTTCTGGAG___
9._SPA 9 [COL]___
___TT_________AA_______________GG______
10._SPA 9 [COL]___
___TT_________AA_______________GG______
11._SPA 9 [COL]___
___TT_________AA_______________GG______
12._SPA 9 [COL]___
___TT_________AA_______________GG______
13._SPA 9 [COL]___
___TT_________AA_______________GG______
14._SPA 9 [COL]___
___TT_________AA_______________GG______
15._SPA 9 [COL]___
___TT_________AA_______________GG______
16._SPA 9 [COL]___
___TT_________AA_______________GG______
17._SPA 9 [COL]___
______TTAGCGAA___CG______TTGGAGCT
18._SPA 9 [COL]___
___AA____________AA___AG______CCAG___
19._SPA 9 [COL]___
___TT___________________________GGAG___
20._SPA 9 [COL]___
___TT_________AA_______________GG______
21._SPA 9 [COL]___
___CC_________AA_______________GG______
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1._SPA 9 [COL]___
TTGGTT___CC___CGAACGCGCTCCAGCT
2._SPA 9 [COL]___
TTGGTT___CC___CGAACGCGCTCCAGCT
3._SPA 9 [COL]___
TTGGTT___CC___CGAACGCGCTCCAGCT
4._SPA 9 [COL]___
TTGGTT___CC___CGAACGCGCTCCAGCT
5._SPA 9 [COL]___
TTGGTT___CC___CGAACGCGCTCCAGCT
6._SPA 9 [COL]___
TTGGTT___CC___CGAACGCGCTCCAGCT
7._SPA 9 [COL]___
TTGGTT___CC___CGAACGCGCTCCAGCT
8._SPA 9 [COL]___
TTGGTT___CC___CGAACGCGCTCCAGCT
9._SPA 9 [COL]___
________________________CG___CT______CT
10._SPA 9 [COL]___
________________________CG___CT______CT
11._SPA 9 [COL]___
________________________CG___CT______CT
12._SPA 9 [COL]___
________________________CG___CT______CT
13._SPA 9 [COL]___
________________________CG___CT______CT
14._SPA 9 [COL]___
________________________CG___CT______CT
15._SPA 9 [COL]___
________________________CG___CT______CT
16._SPA 9 [COL]___
________________________CG___CT______CT
17._SPA 9 [COL]___
_________TTCCATCT___CG_________AG___
18._SPA 9 [COL]___
AACCAA___CC___CGAACG___AGGGAGAG
19._SPA 9 [COL]___
____________CC_________CGCG____________
20._SPA 9 [COL]___
________________________CG___CT______CT
21._SPA 9 [COL]___
________________________CG___CC______CC
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1._SPA 9 [COL]___
CGCT___ATCTAACC______TTCC___CTAG
2._SPA 9 [COL]___
CGCT___ATCTAACC______TTCC___CTAG
3._SPA 9 [COL]___
CGCT___ATCTAACC______TTCC___CTAG
4._SPA 9 [COL]___
CGCT___ATCTAACC______TTCC___CTAG
5._SPA 9 [COL]___
CGCT___ATCTAACC______TTCC___CTAG
6._SPA 9 [COL]___
CGCT___ATCTAACC______TTCC___CTAG
7._SPA 9 [COL]___
CGCT___ATCTAACC______TTCC___CTAG
8._SPA 9 [COL]___
CGCT___ATCTAACC______TTCC___CTAG
9._SPA 9 [COL]___
CG______ATCTAA__________________CTAG
10._SPA 9 [COL]___
CG______ATCTAA__________________CTAG
11._SPA 9 [COL]___
CG______ATCTAA__________________CTAG
12._SPA 9 [COL]___
CG______ATCTAA__________________CTAG
13._SPA 9 [COL]___
CG______ATCTAA__________________CTAG
14._SPA 9 [COL]___
CG______ATCTAA__________________CTAG
15._SPA 9 [COL]___
CG______ATCTAA__________________CTAG
16._SPA 9 [COL]___
CG______ATCTAA__________________CTAG
17._SPA 9 [COL]___
______GG______AACCTTAA______CT___AG
18._SPA 9 [COL]___
CGAG___ATAGAA_________AA______AGAG
19._SPA 9 [COL]___
_______________AACC_____________________
20._SPA 9 [COL]___
CG______ATCTAA__________________CTAG
21._SPA 9 [COL]___
GG______AATTAG__________________CCGG
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1._SPA 9 [COL]___
GTAACTAG___ATCTCTCTCTGT______AC
2._SPA 9 [COL]___
GTAACTAG___ATCTCTCTCTGT______AC
3._SPA 9 [COL]___
GTAACTAG___ATCTCTCTCTGT______AC
4._SPA 9 [COL]___
GTAACTAG___ATCTCTCTCTGT______AC
5._SPA 9 [COL]___
GTAACTAG___ATCTCTCTCTGT______AC
6._SPA 9 [COL]___
GTAACTAG___ATCTCTCTCTGT______AC
7._SPA 9 [COL]___
GTAACTAG___ATCTCTCTCTGT______AC
8._SPA 9 [COL]___
GTAACTAG___ATCTCTCTCTGT______AC
9._SPA 9 [COL]___
___AA____________CT______CT____________
10._SPA 9 [COL]___
___AA____________CT______CT____________
11._SPA 9 [COL]___
___AA____________CT______CT____________
12._SPA 9 [COL]___
___AA____________CT______CT____________
13._SPA 9 [COL]___
___AA____________CT______CT____________
14._SPA 9 [COL]___
___AA____________CT______CT____________
15._SPA 9 [COL]___
___AA____________CT______CT____________
16._SPA 9 [COL]___
___AA____________CT______CT____________
17._SPA 9 [COL]___
____________TT___CT____________GTAA___
18._SPA 9 [COL]___
ACAAAGAG_________AGAG___AC_________
19._SPA 9 [COL]___
GT______AG___AT________________________
20._SPA 9 [COL]___
___AA____________CT______CT____________
21._SPA 9 [COL]___
___AA____________CC______CC____________
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1._SPA 9 [COL]___
GTCT______TTACAG______CTCTTTCCAA
2._SPA 9 [COL]___
GTCT______TTACAG______CTCTTTCCAA
3._SPA 9 [COL]___
GTCT______TTACAG______CTCTTTCCAA
4._SPA 9 [COL]___
GTCT______TTACAG______CTCTTTCCAA
5._SPA 9 [COL]___
GTCT______TTACAG______CTCTTTCCAA
6._SPA 9 [COL]___
GTCT______TTACAG______CTCTTTCCAA
7._SPA 9 [COL]___
GTCT______TTACAG______CTCTTTCCAA
8._SPA 9 [COL]___
GTCT______TTACAG______CTCTTTCCAA
9._SPA 9 [COL]___
GTCT_________AC_________CT___TTCCAA
10._SPA 9 [COL]___
GTCT_________AC_________CT___TTCCAA
11._SPA 9 [COL]___
GTCT_________AC_________CT___TTCCAA
12._SPA 9 [COL]___
GTCT_________AC_________CT___TTCCAA
13._SPA 9 [COL]___
GTCT_________AC_________CT___TTCCAA
14._SPA 9 [COL]___
GTCT_________AC_________CT___TTCCAA
15._SPA 9 [COL]___
GTCT_________AC_________CT___TTCCAA
16._SPA 9 [COL]___
GTCT_________AC_________CT___TTCCAA
17._SPA 9 [COL]___
GT___GTTT_________AGAG_________CC___
18._SPA 9 [COL]___
ACAG______AGACAG______AGAGAAGGAA
19._SPA 9 [COL]___
GT_________CT_______________CTTTCCAA
20._SPA 9 [COL]___
GTCT_________AC_________CT___TTCCAG
21._SPA 9 [COL]___
GTTT_________AC_________TT___TTCGAA
 127 128 129 130 131 132 133 134       
1._SPA 9 [COL]___
CT______CCAGACGGACX_XX_XX_XX_XX_XX_X
2._SPA 9 [COL]___
CT______CCAGACGGACX_XX_XX_XX_XX_XX_X
3._SPA 9 [COL]___
CT______CCAGACGGACX_XX_XX_XX_XX_XX_X
4._SPA 9 [COL]___
CT______CCAGACGGACX_XX_XX_XX_XX_XX_X
5._SPA 9 [COL]___
CT______CCAGACGGACX_XX_XX_XX_XX_XX_X
6._SPA 9 [COL]___
CT______CCAGACGGACX_XX_XX_XX_XX_XX_X
7._SPA 9 [COL]___
CT______CCAGACGGACX_XX_XX_XX_XX_XX_X
8._SPA 9 [COL]___
CT______CCAGACGGACX_XX_XX_XX_XX_XX_X
9._SPA 9 [COL]___
CT_____________________X_XX_XX_XX_XX_XX_X
10._SPA 9 [COL]___
CT_____________________X_XX_XX_XX_XX_XX_X
11._SPA 9 [COL]___
CT_____________________X_XX_XX_XX_XX_XX_X
12._SPA 9 [COL]___
CT_____________________X_XX_XX_XX_XX_XX_X
13._SPA 9 [COL]___
CT_____________________X_XX_XX_XX_XX_XX_X
14._SPA 9 [COL]___
CT_____________________X_XX_XX_XX_XX_XX_X
15._SPA 9 [COL]___
CT_____________________X_XX_XX_XX_XX_XX_X
16._SPA 9 [COL]___
CT_____________________X_XX_XX_XX_XX_XX_X
17._SPA 9 [COL]___
___CTAA_______________X_XX_XX_XX_XX_XX_X
18._SPA 9 [COL]___
AG______CC___ACGGACX_XX_XX_XX_XX_XX_X
19._SPA 9 [COL]___
________________________X_XX_XX_XX_XX_XX_X
20._SPA 9 [COL]___
CT_____________________X_XX_XX_XX_XX_XX_X
21._SPA 9 [COL]___
CC_____________________X_XX_XX_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._SPA_9_[COL] GC-01-099-5-16

Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._SPA_9_[COL] GC-01-099-5-16

Location: Tree: 2
Notes: 2
 Mars, 2018

3._SPA_9_[COL] GC-01-099-5-16

Location: Tree: 3
Notes: 3
 Mars, 2018

4._SPA_9_[COL] GC-01-099-5-16

Location: Tree: 4
Notes: 4
 Mars, 2018

5._SPA_9_[COL] GC-01-099-5-16

Location: Tree: 5
Notes: 5
 Mars, 2018

6._SPA_9_[COL] GC-01-099-5-16

Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

7._SPA_9_[COL] GC-01-099-5-16

Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

8._SPA_9_[COL] GC-01-099-5-16

Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

9._SPA_9_[COL]

Location: 1516 2
 Dapeng Zhang, 2016

10._SPA_9_[COL]

Location: 1516 3
 Dapeng Zhang, 2016

11._SPA_9_[COL]

Location: 1516 4
 Dapeng Zhang, 2016

12._SPA_9_[COL]

Location: 1516 5
 Dapeng Zhang, 2016

13._SPA_9_[COL]

Location: 1516 1 > FP
 Dapeng Zhang, 2016

14._SPA_9_[COL]

Location: 1516 14 > F
 Dapeng Zhang, 2016

15._SPA_9_[COL]

Location: 1516 6 > FP
 Dapeng Zhang, 2016

16._SPA_9_[COL]

Location: 1516 9 > FP
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

17._SPA_9_[COL] RUQ 235

 Lambert Motilal, 2023
Population Assignment: 

18._SPA_9_[COL] RUQ 235

Notes: Reading_Collection
 Mars, 2018

19._SPA_9_[COL] RUQ 235

 Dapeng Zhang, 2014

20._SPA_9_[COL] RUQ 235

 Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

21._SPA_9_[COL]

Location: CAMPUS 2 X1 Y17
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP52 10TcSNP60
11TcSNP75 12TcSNP90 13TcSNP122 14TcSNP131 15TcSNP143
16TcSNP144 17TcSNP150 18TcSNP151 19TcSNP154 20TcSNP174
21TcSNP176 22TcSNP189 23TcSNP193 24TcSNP194 25TcSNP226
26TcSNP230 27TcSNP240 28TcSNP242 29TcSNP290 30TcSNP305
31TcSNP316 32TcSNP329 33TcSNP363 34TcSNP364 35TcSNP372
36TcSNP413 37TcSNP418 38TcSNP421 39TcSNP429 40TcSNP430
41TcSNP448 42TcSNP469 43TcSNP497 44TcSNP519 45TcSNP521
46TcSNP522 47TcSNP529 48TcSNP534 49TcSNP546 50TcSNP547
51TcSNP560 52TcSNP561 53TcSNP577 54TcSNP589 55TcSNP591
56TcSNP602 57TcSNP606 58TcSNP619 59TcSNP640 60TcSNP642
61TcSNP644 62TcSNP645 63TcSNP653 64TcSNP660 65TcSNP689
66TcSNP701 67TcSNP702 68TcSNP723 69TcSNP731 70TcSNP739
71TcSNP751 72TcSNP776 73TcSNP799 74TcSNP800 75TcSNP823
76TcSNP835 77TcSNP836 78TcSNP860 79TcSNP872 80TcSNP878
81TcSNP891 82TcSNP894 83TcSNP899 84TcSNP917 85TcSNP929
86TcSNP944 87TcSNP945 88TcSNP953 89TcSNP994 90TcSNP998
91TcSNP999 92TcSNP1010 93TcSNP1019 94TcSNP1034 95TcSNP1041
96TcSNP1053 97TcSNP1060 98TcSNP1062 99TcSNP1063 100TcSNP1075
101TcSNP1096 102TcSNP1111 103TcSNP1112 104TcSNP1126 105TcSNP1144
106TcSNP1149 107TcSNP1156 108TcSNP1165 109TcSNP1175 110TcSNP1205
111TcSNP1230 112TcSNP1242 113TcSNP1253 114TcSNP1270 115TcSNP1275
116TcSNP1293 117TcSNP1309 118TcSNP1350 119TcSNP1383 120TcSNP1401
121TcSNP1404 122TcSNP1414 123TcSNP1439 124TcSNP1442 125TcSNP1458
126TcSNP1484 127TcSNP1520 128TcSNP1524 129TcSNP1527 130Tcm001s00947643
131Tcm002s20575712 132Tcm003s01336581 133Tcm003s07402719 134Tcm006s26664133