SNP Profiles of EET 272 [ECU]   View Data

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 Key

 1234567891011121314
_Input profile
AAAACTAAGGGGCCCCCTCCGGTTCTTT
1._GC-03-032-3-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
2._GC-03-032-3-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
3._GC-03-032-3-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
4._GC-03-032-3-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
5._GC-03-032-3-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
6._GC-03-032-3-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
7._GC-03-032-3-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
8._EET_272_[ECU]
AAAACTAA________CTCCGG__CT__
9._EET_272_[ECU]
AAAACTAA________CTCCGG__CT__
10._EET_272_[ECU]
AAAACTAA________CTCCGG__CT__
11._EET_272_[ECU]
AAAACTAA________CTCCGG__CT__
12._EET_272_[ECU]
AAAACTAA________CTCCGG__CT__
13._EET_272_[ECU]
AAAACTAA________CTCCGG__CT__
14._EET_272_[ECU]
AAAACTAA________CTCCGG__CT__
15._EET_272_[ECU]
AAAACTAA________CTCCGG__CT__
16._RUQ_6
____CTAA____TT__CT____TTTT__
17._EET_272_[ECU]
AAAACTAA________CT__AG__CT__
18._RUQ_6
____________TT______________
19._GC-03-032-3-11
AAACCCCCGGGGCTCCCCCCGGTTCCTT
20._GC-03-032-3-11
AAACCCCCGGGGCTCCCCCCGGTTCCTT
21._EET_272_[ECU]
AAACCCCC________CCCCGG__CC__
22._EET_272_[ECU]
AAACCCCC________CCCCGG__CC__
23._RUQ_6
AAAA__AAGGGG__GGAG__GGAAAGAA
24._MITC-000381
AAAA__AAGGGG__GGAG__GGAAAGAA
25._GC-03-32-3-11
AAAC__CCGGGG__GGGG__GGAAGGAA
 1516171819202122232425262728
_Input profile
AAAAGGGGCCGGCTAATTGGTTAACCCC
1._GC-03-032-3-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
2._GC-03-032-3-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
3._GC-03-032-3-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
4._GC-03-032-3-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
5._GC-03-032-3-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
6._GC-03-032-3-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
7._GC-03-032-3-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
8._EET_272_[ECU]
____GG____GG________TTAA__CC
9._EET_272_[ECU]
____GG____GG________TTAA__CC
10._EET_272_[ECU]
____GG____GG________TTAA__CC
11._EET_272_[ECU]
____GG____GG________TTAA__CC
12._EET_272_[ECU]
____GG____GG________TTAA__CC
13._EET_272_[ECU]
____GG____GG________TTAA__CC
14._EET_272_[ECU]
____GG____GG________TTAA__CC
15._EET_272_[ECU]
____GG____GG________TTAA__CC
16._RUQ_6
________CC________GG__AACCCC
17._EET_272_[ECU]
__________GG________________
18._RUQ_6
____GGTT__________________CC
19._GC-03-032-3-11
AACCAGCGCCCCTTAATTGGATAACCGG
20._GC-03-032-3-11
AACCAGCGCCCCTTAATTGGATAACCGG
21._EET_272_[ECU]
____AG____CC________ATAA__GG
22._EET_272_[ECU]
____AG____CC________ATAA__GG
23._RUQ_6
TTAAGGCC__GGAGAAAAGGTTAAGGGG
24._MITC-000381
TTAAGGCC__GGAGAAAAGGTTAAGGGG
25._GC-03-32-3-11
TTCCAGCG__CCAAAGAAGGATAAGGCC
 2930313233343536373839404142
_Input profile
AATTGGGGGGCCAGGGGGTTAACCGGCC
1._GC-03-032-3-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
2._GC-03-032-3-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
3._GC-03-032-3-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
4._GC-03-032-3-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
5._GC-03-032-3-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
6._GC-03-032-3-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
7._GC-03-032-3-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
8._EET_272_[ECU]
AA______GG__AGGG____AA______
9._EET_272_[ECU]
AA______GG__AGGG____AA______
10._EET_272_[ECU]
AA______GG__AGGG____AA______
11._EET_272_[ECU]
AA______GG__AGGG____AA______
12._EET_272_[ECU]
AA______GG__AGGG____AA______
13._EET_272_[ECU]
AA______GG__AGGG____AA______
14._EET_272_[ECU]
AA______GG__AGGG____AA______
15._EET_272_[ECU]
AA______GG__AGGG____AA______
16._RUQ_6
______GGGGCCAGGG____AACC____
17._EET_272_[ECU]
AA__________AG______AA______
18._RUQ_6
________GG__AG________CC____
19._GC-03-032-3-11
AATTGTGGCGCCAGGGGGTTGGCTAGCC
20._GC-03-032-3-11
AATTGTGGCGCCAGGGGGTTGGCTAGCC
21._EET_272_[ECU]
AA______CG__AGGG____GG______
22._EET_272_[ECU]
AA______CG__AGGG____GG______
23._RUQ_6
AAAACCGGGGCCAGCCCCAAAAGGGGGG
24._MITC-000381
AAAACCGGGGCCAGCCCCAAAAGGGGGG
25._GC-03-32-3-11
AAAAACGGCGCCAGCCCCAAGGAGAGGG
 4344454647484950515253545556
_Input profile
GGTTTTAGAGAACCACGGGGGGTTCTCC
1._GC-03-032-3-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
2._GC-03-032-3-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
3._GC-03-032-3-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
4._GC-03-032-3-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
5._GC-03-032-3-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
6._GC-03-032-3-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
7._GC-03-032-3-11
GGTTTTAGAGAACCACGGGGGG__CTCC
8._EET_272_[ECU]
____TT__________________CTCC
9._EET_272_[ECU]
____TT__________________CTCC
10._EET_272_[ECU]
____TT__________________CTCC
11._EET_272_[ECU]
____TT__________________CTCC
12._EET_272_[ECU]
____TT__________________CTCC
13._EET_272_[ECU]
____TT__________________CTCC
14._EET_272_[ECU]
____TT__________________CTCC
15._EET_272_[ECU]
____TT__________________CTCC
16._RUQ_6
GGTT____AG____________TTCT__
17._EET_272_[ECU]
________________________CTCT
18._RUQ_6
________AG__________________
19._GC-03-032-3-11
GGTTCTAAGGAACC__GGAAGGTTCCCT
20._GC-03-032-3-11
GGTTCTAAGGAACCCCGGAAGGTTCCCT
21._EET_272_[ECU]
____CT__________________CCCT
22._EET_272_[ECU]
____CT__________________CCCT
23._RUQ_6
CC__AA__AGAAGG__GGGGCCAAAGGG
24._MITC-000381
CC__AA__AGAAGG__GGGGCCAAAGGG
25._GC-03-32-3-11
CC__AG__GGAAGG__GGAACCAAGGAG
 5758596061626364656667686970
_Input profile
TTGGCCCCTTAAGGGGACAAGTGGGGTT
1._GC-03-032-3-11
TTGGCCCCTTAAGGGGACAAGTGGGGTT
2._GC-03-032-3-11
TTGGCCCCTTAAGGGGACAAGTGGGGTT
3._GC-03-032-3-11
TTGGCCCCTTAAGGGGACAAGTGGGGTT
4._GC-03-032-3-11
TTGGCCCCTTAAGGGGACAAGTGGGGTT
5._GC-03-032-3-11
TTGGCCCCTTAAGGGGACAAGTGGGGTT
6._GC-03-032-3-11
TTGGCCCCTTAAGGGGACAAGTGGGGTT
7._GC-03-032-3-11
TTGGCCCCTTAAGGGGACAAGTGGGGTT
8._EET_272_[ECU]
____CC__TTAAGG__ACAAGTGG____
9._EET_272_[ECU]
____CC__TTAAGG__ACAAGTGG____
10._EET_272_[ECU]
____CC__TTAAGG__ACAAGTGG____
11._EET_272_[ECU]
____CC__TTAAGG__ACAAGTGG____
12._EET_272_[ECU]
____CC__TTAAGG__ACAAGTGG____
13._EET_272_[ECU]
____CC__TTAAGG__ACAAGTGG____
14._EET_272_[ECU]
____CC__TTAAGG__ACAAGTGG____
15._EET_272_[ECU]
____CC__TTAAGG__ACAAGTGG____
16._RUQ_6
TT__CCCCTTAA__GGACAAGTGGGG__
17._EET_272_[ECU]
____CC__TTAAGG__ACAAGTGG____
18._RUQ_6
__GG____________ACAA__GGGG__
19._GC-03-032-3-11
TTGGCCCCCCAAGGGGCCAGGTGGAGTT
20._GC-03-032-3-11
TTGGCCCCCC__GGGGCCAGGTGGAGTT
21._EET_272_[ECU]
____CC__CCAAGG__CCAGGTGG____
22._EET_272_[ECU]
____CC__CC__GG__CCAGGTGG____
23._RUQ_6
AAGGGGGGAAAAGGGGACAAACCCGG__
24._MITC-000381
AAGGGGGGAAAAGGGGACAAACCCGG__
25._GC-03-32-3-11
AAGGGGGGGGACGGGGCCAGACCCAG__
 7172737475767778798081828384
_Input profile
CGAACTACAACCCCAACCCCCCAAACCT
1._GC-03-032-3-11
CGAACTACAACCCCAACCCCCCAAACCT
2._GC-03-032-3-11
CGAACTACAACCCCAACCCCCCAAACCT
3._GC-03-032-3-11
CGAACTACAACCCCAACCCCCCAAACCT
4._GC-03-032-3-11
CGAACTACAACCCCAACCCCCCAAACCT
5._GC-03-032-3-11
CGAACTACAACCCCAACCCCCCAAACCT
6._GC-03-032-3-11
CGAACTACAACCCCAACCCCCCAAACCT
7._GC-03-032-3-11
CGAACTAC__CCCCAACCCCCCAAACCT
8._EET_272_[ECU]
__AACT__________CCCC______CT
9._EET_272_[ECU]
__AACT__________CCCC______CT
10._EET_272_[ECU]
__AACT__________CCCC______CT
11._EET_272_[ECU]
__AACT__________CCCC______CT
12._EET_272_[ECU]
__AACT__________CCCC______CT
13._EET_272_[ECU]
__AACT__________CCCC______CT
14._EET_272_[ECU]
__AACT__________CCCC______CT
15._EET_272_[ECU]
__AACT__________CCCC______CT
16._RUQ_6
________________CCCC____ACCT
17._EET_272_[ECU]
__AACT____________________CT
18._RUQ_6
__AA____________ACCC____AC__
19._GC-03-032-3-11
CCAGCTCCAGACCCAAACGGCCTTAATT
20._GC-03-032-3-11
CCAGCTCCAGACCCAAACGGCCTTAATT
21._EET_272_[ECU]
__AGCT__________ACGG______TT
22._EET_272_[ECU]
__AGCT__________ACGG______TT
23._RUQ_6
____AGACAACCCC__CCGGGGAAACAG
24._MITC-000381
____AGACAACCCC__CCGGGGAAACAG
25._GC-03-32-3-11
____AGCCAGACCC__ACCCGGTTAAAA
 85868788899091929394    
_Input profile
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
1._GC-03-032-3-11
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
2._GC-03-032-3-11
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
3._GC-03-032-3-11
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
4._GC-03-032-3-11
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
5._GC-03-032-3-11
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
6._GC-03-032-3-11
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
7._GC-03-032-3-11
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
8._EET_272_[ECU]
CTCC__AA__CTTTTT____X_XX_XX_XX_X
9._EET_272_[ECU]
CTCC__AA__CTTTTT____X_XX_XX_XX_X
10._EET_272_[ECU]
CTCC__AA__CTTTTT____X_XX_XX_XX_X
11._EET_272_[ECU]
CTCC__AA__CTTTTT____X_XX_XX_XX_X
12._EET_272_[ECU]
CTCC__AA__CTTTTT____X_XX_XX_XX_X
13._EET_272_[ECU]
CTCC__AA__CTTTTT____X_XX_XX_XX_X
14._EET_272_[ECU]
CTCC__AA__CTTTTT____X_XX_XX_XX_X
15._EET_272_[ECU]
CTCC__AA__CTTTTT____X_XX_XX_XX_X
16._RUQ_6
______AA__CTTT______X_XX_XX_XX_X
17._EET_272_[ECU]
CTCT__AA__CTTTTT____X_XX_XX_XX_X
18._RUQ_6
__CC____CT__TT______X_XX_XX_XX_X
19._GC-03-032-3-11
CTCCTTAACCCCTTTTAAGGX_XX_XX_XX_X
20._GC-03-032-3-11
CTCCTTAACCCCTTTTAAGGX_XX_XX_XX_X
21._EET_272_[ECU]
CTCC__AA__CCTTTT____X_XX_XX_XX_X
22._EET_272_[ECU]
CTCC__AA__CCTTTT____X_XX_XX_XX_X
23._RUQ_6
AG__AA____AGAAAAATGGX_XX_XX_XX_X
24._MITC-000381
AG__AA____AGAAAAATGGX_XX_XX_XX_X
25._GC-03-32-3-11
AG__AA____GGAAAATTGGX_XX_XX_XX_X

Input profile: EET_272_[ECU] GC-03-032-3-11

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

1._EET_272_[ECU] GC-03-032-3-11

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._EET_272_[ECU] GC-03-032-3-11

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

3._EET_272_[ECU] GC-03-032-3-11

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

4._EET_272_[ECU] GC-03-032-3-11

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

5._EET_272_[ECU] GC-03-032-3-11

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

6._EET_272_[ECU] GC-03-032-3-11

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

7._EET_272_[ECU] GC-03-032-3-11

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

8._EET_272_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 2 > FP
 Dapeng Zhang, 2016

9._EET_272_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 5
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

10._EET_272_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 9
 Dapeng Zhang, 2016

11._EET_272_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 10
 Dapeng Zhang, 2016

12._EET_272_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 13
 Dapeng Zhang, 2016

13._EET_272_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 16
 Dapeng Zhang, 2016

14._EET_272_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 1 > FP
 Dapeng Zhang, 2016

15._EET_272_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 3 > FP
 Dapeng Zhang, 2016

16._EET_272_[ECU] RUQ_6

96.3 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._EET_272_[ECU]

95 %
30 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 3 X16 Y8
 Dapeng Zhang, 2016

18._EET_272_[ECU] RUQ_6

87.5 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

19._EET_272_[ECU] GC-03-032-3-11

73.1 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

20._EET_272_[ECU] GC-03-032-3-11

72.6 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

21._EET_272_[ECU]

65 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 8
 Dapeng Zhang, 2016

22._EET_272_[ECU]

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 7
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

23._EET_272_[ECU] RUQ_6

50 %
80 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

24._EET_272_[ECU] MITC-000381

50 %
80 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

25._EET_272_[ECU] GC-03-32-3-11

35 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 3, Rep: 11, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240