SNP Profiles of PA 72 [PER]   View Data

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 Key

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_Input profile
CTAGGGCTTTACCCTTCCCCAAGGCCAG
1._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
2._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
3._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
4._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
5._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
6._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
7._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
8._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
9._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
10._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
11._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
12._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
13._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
14._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
15._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
16._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
17._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
18._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
19._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
20._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
21._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
22._GC-08-51-1-62
AGAGCCAGAAACGGAA__AAGGGGAG
 1516171819202122232425262728
_Input profile
CTAAGGCTCCGGGGAATTCCCGGTCTAC
1._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
2._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
3._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
4._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
5._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
6._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
7._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
8._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
9._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
10._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
11._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
12._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
13._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
14._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
15._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
16._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
17._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
18._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
19._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
20._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
21._PA_72_[PER]
CTAAGGCTCCGG-AATTCCCGGTCTAC
22._GC-08-51-1-62
AGAAGGAGGGCCCC_AACCCGAC_AC
 293031323334353637383940  
_Input profile
AAGGAACCAGCCAACCGTACAAGGX_XX_X
1._GC-08-051-1-62
AAGGAACCAGCCAACCGTACAAGGX_XX_X
2._GC-08-051-1-62
AAGGAACCAGCCAACCGTACAAGGX_XX_X
3._GC-08-051-1-62
AAGGAACCAGCCAACCGTACAAGGX_XX_X
4._GC-08-051-1-62
AAGGAACCAGCCAACCGTACAAGGX_XX_X
5._GC-08-051-1-62
AAGGAACCAGCCAACCGTACAAGGX_XX_X
6._GC-08-051-1-62
AAGGAACCAGCCAACCGTACAAGGX_XX_X
7._GC-08-051-1-62
AAGGAACCAGCCAACCGTACAAGGX_XX_X
8._GC-08-051-1-62
AAGGAACCAGCCAACCGTACAAGGX_XX_X
9._GC-08-051-1-62
AAGGAACCAGCCAACCGTACAAGGX_XX_X
10._GC-08-051-1-62
AAGGAACCAGCCAACCGTACAAGGX_XX_X
11._PA_72_[PER]
AAGGAACCAGCCAACCGTACAAGGX_XX_X
12._PA_72_[PER]
AAGGAACCAGCCAACCGTACAAGGX_XX_X
13._PA_72_[PER]
AAGGAACCAGCCAACCGTACAAGGX_XX_X
14._PA_72_[PER]
AAGGAACCAGCCAACCGTACAAGGX_XX_X
15._PA_72_[PER]
AAGGAACCAGCCAACCGTACAAGGX_XX_X
16._PA_72_[PER]
AAGGAACCAGCCAACCGTACAAGGX_XX_X
17._PA_72_[PER]
AAGGAACCAGCCAACCGTACAAGGX_XX_X
18._PA_72_[PER]
AAGGAACCAGCCAACCGTACAAGGX_XX_X
19._PA_72_[PER]
AAGGAACCAGCCAACCGTACAAGGX_XX_X
20._PA_72_[PER]
AAGGAACCAGCCACCCGTACAAGGX_XX_X
21._PA_72_[PER]
AAGGAACCAG-ACCCGTACAAGGX_XX_X
22._GC-08-51-1-62
_GGAAGGAGGGACGGACACAAGGX_XX_X

Input profile: PA_72_[PER]

 
Mars Center for Cocoa Science, Brazil
Location: 8162 3
 Dapeng Zhang, 2016

1._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

2._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

3._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

4._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

5._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

6._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

7._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

8._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

11._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 7 > FP
 Dapeng Zhang, 2016

12._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 4 > FP
 Dapeng Zhang, 2016

13._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 1 > FP
 Dapeng Zhang, 2016

14._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 10
 Dapeng Zhang, 2016

15._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 9
 Dapeng Zhang, 2016

16._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 8
 Dapeng Zhang, 2016

17._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 6
 Dapeng Zhang, 2016

18._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 5
 Dapeng Zhang, 2016

19._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

20._PA_72_[PER]

98.8 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 633
 Dapeng Zhang, 2016

21._PA_72_[PER]

98.7 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 633
 Dapeng Zhang, 2014

22._PA_72_[PER] GC-08-51-1-62

47.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 62, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25