SNP Profiles of UF 667 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AC	AA	AA	AA	AG	GG	AG	AC	AA	GG	GG	AG	AG	AA
1._GC-01-29-2-6	AC	AC	AG	AA	AG	AG	AA	AC	AA	GG	AG	AA	AA	AC
2._RUQ_55	AC	AC	AG	AA	AG	AG	AA	AC	AA	GG	AG	AA	AA	AC
3._RUQ_55	__	__	__	__	__	__	AA	__	__	__	__	__	__	__
4._UF_667	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
5._UF_667	__	__	__	__	__	__	AA	__	AA	__	__	__	__	__
6._UF_667	__	__	__	__	__	__	AA	__	AA	__	__	__	__	__
7._GC-01-029-2-06	AC	AC	AG	AA	CT	__	AA	GT	AA	CC	AG	TT	TT	GT
8._UF_667	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
9._UF_667	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
10._UF_667	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
11._UF_667	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
12._UF_667	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
13._RUQ_55	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
14._UF_667	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
15._GC-01-029-2-06	AC	AC	AG	AA	CT	__	AA	GT	AA	CC	AG	TT	TT	GT
16._UF_667	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
17._GC-01-029-2-06	AC	AC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
18._GC-01-029-2-06	AC	AC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
19._GC-01-029-2-06	AC	AC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
20._GC-01-029-2-06	AC	AC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
21._GC-01-029-2-06	AC	AC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
22._UF_667	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
23._RUQ_55	__	__	__	__	__	CT	__	GT	__	__	AG	__	__	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	AG	GG	AC	GG	AG	AG	CC	AG	CC	AG	AC	AA
1._GC-01-29-2-6	AG	AA	GG	AG	AA	GG	AA	AG	AC	AG	CG	AG	AC	AG
2._RUQ_55	AG	AA	GG	AG	AA	GG	AA	AG	AC	AG	CG	AG	AC	AG
3._RUQ_55	__	GT	__	__	__	__	__	__	AC	__	CG	__	__	__
4._UF_667	__	GT	CC	__	AA	__	TT	__	AC	CT	CG	AG	GT	CT
5._UF_667	__	GT	CC	__	AA	__	TT	__	AC	CT	CG	AG	GT	CT
6._UF_667	__	GT	CC	__	AA	__	TT	__	AC	CT	CG	AG	GT	CT
7._GC-01-029-2-06	CT	GT	CC	TT	AA	GG	TT	__	AC	CT	CG	AG	GT	CT
8._UF_667	__	GT	CC	__	AA	__	TT	__	AC	CT	CG	AG	GT	CT
9._UF_667	__	GT	CC	__	AA	__	TT	__	AC	CT	CG	AG	GT	CT
10._UF_667	__	GT	CC	__	AA	__	TT	__	AC	CT	CG	AG	GT	CT
11._UF_667	__	GT	CC	__	AA	__	TT	__	AC	CT	CG	AG	GT	CT
12._UF_667	__	GT	CC	__	AA	__	TT	__	AC	CT	CG	AG	GT	CT
13._RUQ_55	__	GT	CC	__	AA	__	TT	__	AC	CT	CG	AG	GT	CT
14._UF_667	__	GT	CC	__	AA	__	TT	__	AC	CT	CG	AG	GT	CT
15._GC-01-029-2-06	CT	GT	CC	TT	AA	GG	TT	CT	AC	CT	CG	AG	GT	CT
16._UF_667	__	GT	CC	__	AA	__	TT	__	AC	CT	CG	AG	GT	CT
17._GC-01-029-2-06	CT	GT	CC	TT	AA	GG	TT	CT	AC	CT	CG	AG	GT	CT
18._GC-01-029-2-06	CT	GT	CC	TT	AA	GG	TT	CT	AC	CT	CG	AG	GT	CT
19._GC-01-029-2-06	CT	GT	CC	TT	AA	GG	TT	CT	AC	CT	CG	AG	GT	CT
20._GC-01-029-2-06	CT	GT	CC	TT	AA	GG	TT	CT	AC	CT	CG	AG	GT	CT
21._GC-01-029-2-06	CT	GT	CC	TT	AA	GG	TT	CT	AC	CT	CG	AG	GT	CT
22._UF_667	__	TT	TT	__	CC	__	TT	__	AC	CT	CG	GG	GT	CT
23._RUQ_55	__	GT	__	CT	__	__	__	CT	AC	CT	CG	AG	GT	CT

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	GG	AA	AG	AA	GG	AA	GG	AG	GG	CC	TT	AT	AA	GG
1._GC-01-29-2-6	AG	AT	AG	AC	CG	AG	GG	AG	GG	CC	AT	AT	AG	AG
2._RUQ_55	AG	AT	AG	AC	CG	AG	GG	AG	GG	CC	AT	AT	AG	AG
3._RUQ_55	__	__	__	__	__	AG	__	__	__	__	__	__	AG	__
4._UF_667	CT	__	__	AC	GG	AG	__	CT	GG	__	__	AT	__	__
5._UF_667	CT	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__
6._UF_667	CT	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__
7._GC-01-029-2-06	CT	AT	AG	AC	CG	AG	GG	CT	GG	GG	AT	AT	AG	AG
8._UF_667	CT	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__
9._UF_667	CT	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__
10._UF_667	CT	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__
11._UF_667	CT	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__
12._UF_667	CT	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__
13._RUQ_55	CT	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__
14._UF_667	CT	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__
15._GC-01-029-2-06	CT	AT	AG	AC	CG	AG	GG	CT	GG	GG	AT	AT	AG	AG
16._UF_667	CT	__	__	AC	__	AG	__	CT	GG	__	__	AT	__	__
17._GC-01-029-2-06	CT	AT	AG	AC	CG	AG	GG	CT	GG	GG	AT	AT	AG	AG
18._GC-01-029-2-06	CT	AT	AG	AC	CG	AG	GG	CT	GG	GG	AT	AT	AG	AG
19._GC-01-029-2-06	CT	AT	AG	AC	CG	AG	GG	CT	GG	GG	AT	AT	AG	AG
20._GC-01-029-2-06	CT	AT	AG	AC	CG	AG	GG	CT	GG	GG	AT	AT	AG	AG
21._GC-01-029-2-06	CT	AT	AG	AC	__	AG	GG	CT	GG	GG	AT	AT	AG	AG
22._UF_667	CC	__	__	AA	CC	AG	__	CC	GG	__	__	AT	__	__
23._RUQ_55	__	__	AG	AC	CG	AG	__	CT	__	__	__	__	AG	AG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AT	AG	GG	AG	GG	AT	CG	AG	AC	AC	AG	AC	AG	CG
1._GC-01-29-2-6	AT	AG	AG	AG	GG	AT	CG	AG	CC	CC	GG	AC	AA	CC
2._RUQ_55	AT	AG	AG	AG	GG	AT	CG	AG	CC	CC	GG	AC	AA	CC
3._RUQ_55	__	__	__	__	__	__	__	__	__	AC	__	__	__	CC
4._UF_667	AT	__	__	__	GG	__	__	__	__	CC	__	GT	__	CC
5._UF_667	AT	__	__	__	GG	__	__	__	__	CC	__	GT	__	CC
6._UF_667	AT	__	__	__	GG	__	__	__	__	CC	__	GT	__	CC
7._GC-01-029-2-06	AT	CT	AG	AG	GG	AT	CG	__	CC	CC	GG	GT	AA	CC
8._UF_667	AT	__	__	__	GG	__	__	__	__	CC	__	GT	__	CC
9._UF_667	AT	__	__	__	GG	__	__	__	__	CC	__	GT	__	CC
10._UF_667	AT	__	__	__	GG	__	__	__	__	CC	__	GT	__	CC
11._UF_667	AT	__	__	__	GG	__	__	__	__	CC	__	GT	__	CC
12._UF_667	AT	__	__	__	GG	__	__	__	__	CC	__	GT	__	CC
13._RUQ_55	AT	__	__	__	GG	__	__	__	__	CC	__	GT	__	CC
14._UF_667	AT	__	__	__	GG	__	__	__	__	CC	__	GT	__	CC
15._GC-01-029-2-06	AT	CT	AG	AG	GG	AT	CG	__	CC	CC	GG	GT	AA	CC
16._UF_667	AT	__	__	__	GG	__	__	__	__	CC	__	GT	__	CC
17._GC-01-029-2-06	AT	CT	AG	AG	GG	AT	CG	__	CC	CC	GG	GT	AA	CC
18._GC-01-029-2-06	AT	CT	AG	AG	GG	AT	CG	__	CC	CC	GG	GT	AA	CC
19._GC-01-029-2-06	AT	CT	AG	AG	GG	AT	CG	__	CC	CC	GG	GT	AA	CC
20._GC-01-029-2-06	AT	CT	AG	AG	GG	AT	CG	__	CC	CC	GG	GT	AA	CC
21._GC-01-029-2-06	AT	CT	AG	AG	GG	AT	CG	__	CC	CC	GG	GT	AA	CC
22._UF_667	AA	__	__	__	GG	__	__	__	__	AA	__	GG	__	CG
23._RUQ_55	AT	__	__	__	__	__	CG	__	__	CC	__	GT	__	CC

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	AC	AG	GG	AA	AG	AA	CC	GG	AG	AC	AC	AC	CC	CG
1._GC-01-29-2-6	AC	AG	GG	AG	AG	AG	AC	AG	AG	AC	AC	AC	AC	CC
2._RUQ_55	AC	AG	GG	AG	AG	AG	AC	AG	AG	AC	AC	AC	AC	CC
3._RUQ_55	AC	__	CC	__	__	__	GT	AG	__	__	__	__	AC	TT
4._UF_667	AC	__	__	CT	__	__	GT	__	__	__	__	__	__	__
5._UF_667	AC	__	__	CT	__	__	GT	__	__	__	__	__	__	__
6._UF_667	AC	__	__	CT	__	__	GT	__	__	__	__	__	__	__
7._GC-01-029-2-06	AC	CT	CC	CT	AG	AG	GT	AG	CT	GT	GT	GT	AC	GG
8._UF_667	AC	__	__	CT	__	__	GT	__	__	__	__	__	__	__
9._UF_667	AC	__	__	CT	__	__	GT	__	__	__	__	__	__	__
10._UF_667	AC	__	__	CT	__	__	GT	__	__	__	__	__	__	__
11._UF_667	AC	__	__	CT	__	__	GT	__	__	__	__	__	__	__
12._UF_667	AC	__	__	CT	__	__	GT	__	__	__	__	__	__	__
13._RUQ_55	AC	__	__	CT	__	__	GT	__	__	__	__	__	__	__
14._UF_667	AC	__	__	CT	__	__	GT	__	__	__	__	__	__	__
15._GC-01-029-2-06	AC	CT	CC	CT	AG	__	GT	AG	CT	GT	GT	GT	AC	GG
16._UF_667	AC	__	__	CT	__	__	GT	__	__	__	__	__	__	__
17._GC-01-029-2-06	AC	CT	CC	CT	AG	AG	GT	AG	CT	GT	GT	GT	AC	GG
18._GC-01-029-2-06	AC	CT	CC	CT	AG	AG	GT	AG	CT	GT	GT	GT	AC	GG
19._GC-01-029-2-06	AC	CT	CC	CT	AG	AG	GT	AG	CT	GT	GT	GT	AC	GG
20._GC-01-029-2-06	AC	CT	CC	CT	AG	AG	GT	AG	CT	GT	GT	GT	AC	GG
21._GC-01-029-2-06	AC	CT	CC	CT	AG	AG	GT	AG	CT	GT	GT	GT	AC	GG
22._UF_667	CC	__	__	TT	__	__	GG	__	__	__	__	__	__	__
23._RUQ_55	AA	__	CC	CT	__	__	GT	AG	CT	__	__	GT	AC	__

	71	72	73	74	75	76	77	78	79	80	81	82
_Input profile	GG	GG	AG	GG	GG	AC	AG	GG	AG	AT	AA	AA	X_X	X_X
1._GC-01-29-2-6	AG	CG	GG	GG	AG	AC	AA	GG	AG	AA	AG	AG	X_X	X_X
2._RUQ_55	AG	CG	GG	GG	AG	AC	AA	GG	AG	AA	AG	AG	X_X	X_X
3._RUQ_55	__	CG	__	__	AG	__	__	__	__	__	__	AG	X_X	X_X
4._UF_667	__	CG	CC	__	__	__	TT	GG	__	AA	CT	AG	X_X	X_X
5._UF_667	__	CG	CC	__	__	__	TT	GG	__	AA	CT	AG	X_X	X_X
6._UF_667	__	CG	CC	__	__	__	TT	GG	__	AA	CT	AG	X_X	X_X
7._GC-01-029-2-06	AA	CG	CC	CC	__	AC	TT	GG	CT	AA	CT	AG	X_X	X_X
8._UF_667	__	CG	CC	__	__	__	TT	GG	__	AA	CT	AG	X_X	X_X
9._UF_667	__	CG	CC	__	__	__	TT	GG	__	AA	CT	AG	X_X	X_X
10._UF_667	__	CG	CC	__	__	__	TT	GG	__	AA	CT	AG	X_X	X_X
11._UF_667	__	CG	CC	__	__	__	TT	GG	__	AA	CT	AG	X_X	X_X
12._UF_667	__	CG	CC	__	__	__	TT	GG	__	AA	CT	AG	X_X	X_X
13._RUQ_55	__	CG	CC	__	__	__	TT	GG	__	AA	CT	AG	X_X	X_X
14._UF_667	__	CG	CC	__	__	__	TT	GG	__	AA	CT	AG	X_X	X_X
15._GC-01-029-2-06	AA	CG	CC	CC	AG	AC	TT	GG	CT	AA	CT	AG	X_X	X_X
16._UF_667	__	CG	CC	__	__	__	TT	GG	__	AA	CT	AG	X_X	X_X
17._GC-01-029-2-06	AA	CG	CC	CC	AG	AC	TT	GG	CT	AA	CT	AG	X_X	X_X
18._GC-01-029-2-06	AA	CG	CC	CC	AG	AC	TT	GG	CT	AA	CT	AG	X_X	X_X
19._GC-01-029-2-06	AA	CG	CC	CC	AG	AC	TT	GG	CT	AA	CT	AG	X_X	X_X
20._GC-01-029-2-06	AA	CG	CC	CC	AG	AC	TT	GG	CT	AA	CT	AG	X_X	X_X
21._GC-01-029-2-06	AA	CG	CC	CC	AG	AC	TT	GG	CT	AA	CT	AG	X_X	X_X
22._UF_667	__	GG	CC	__	__	__	CT	CG	__	AA	CC	AG	X_X	X_X
23._RUQ_55	__	CG	CC	__	__	AC	__	__	__	__	__	AG	X_X	X_X

Input profile: UF_667 UF_667_Fld#_119_Plt#_1

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USDA-TARS, United States of America

Location: Field: 119, Tree: 1

1._UF_667 GC-01-29-2-6

73.2 %
82 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 2, Rep: 6, Tree: 1 > FP1

Notes: Brazil_Selections_Poss_grandparent

2._UF_667 RUQ_55

73.2 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

3._UF_667 RUQ_55

44.1 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

4._UF_667

41.4 %
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F466 T2

Dapeng Zhang, 2016

5._UF_667

41.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1206 7

Dapeng Zhang, 2016

6._UF_667

41.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1206 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

7._UF_667 GC-01-029-2-06

40.4 %
78 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

8._UF_667

40 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1206 5 > FP

Dapeng Zhang, 2016

9._UF_667

40 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1206 1 > FP

Dapeng Zhang, 2016

10._UF_667

40 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1206 10

Dapeng Zhang, 2016

11._UF_667

40 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1206 3

Dapeng Zhang, 2016

12._UF_667

40 %
35 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

13._UF_667 RUQ_55

40 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

14._UF_667

40 %
35 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: C0244

Dapeng Zhang, 2016

15._UF_667 GC-01-029-2-06

39.9 %
79 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

16._UF_667

39.7 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1206 11 > F

Dapeng Zhang, 2016

17._UF_667 GC-01-029-2-06

39.5 %
81 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

18._UF_667 GC-01-029-2-06

39.5 %
81 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

19._UF_667 GC-01-029-2-06

39.5 %
81 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP2

20._UF_667 GC-01-029-2-06

39.5 %
81 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

21._UF_667 GC-01-029-2-06

39.4 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11 > FP4

22._UF_667

37.1 %
35 shared markers

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Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia

Location: KW 292 I-042

Dapeng Zhang, 2016

23._UF_667 RUQ_55

34.7 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1350	20	TcSNP1383
21	TcSNP1414	22	TcSNP1439	23	TcSNP144	24	TcSNP1442	25	TcSNP1458
26	TcSNP1484	27	TcSNP150	28	TcSNP151	29	TcSNP1520	30	TcSNP154
31	TcSNP174	32	TcSNP193	33	TcSNP226	34	TcSNP230	35	TcSNP240
36	TcSNP242	37	TcSNP25	38	TcSNP28	39	TcSNP316	40	TcSNP32
41	TcSNP329	42	TcSNP364	43	TcSNP372	44	TcSNP413	45	TcSNP418
46	TcSNP42	47	TcSNP429	48	TcSNP430	49	TcSNP448	50	TcSNP497
51	TcSNP521	52	TcSNP529	53	TcSNP547	54	TcSNP560	55	TcSNP561
56	TcSNP577	57	TcSNP591	58	TcSNP60	59	TcSNP602	60	TcSNP619
61	TcSNP653	62	TcSNP689	63	TcSNP723	64	TcSNP731	65	TcSNP75
66	TcSNP751	67	TcSNP776	68	TcSNP799	69	TcSNP823	70	TcSNP836
71	TcSNP860	72	TcSNP872	73	TcSNP891	74	TcSNP894	75	TcSNP899
76	TcSNP90	77	TcSNP917	78	TcSNP929	79	TcSNP944	80	TcSNP953
81	TcSNP994	82	TcSNP998