SNP Profiles of "UF 667"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-01-029-2-06
______GGGGAT___AG______CTCTACCT___
2. _GC-01-029-2-06
______GGGGAT___AG______CTCTACCT___
3. _GC-01-029-2-06
______GGGGAT___AG______CTCTACCT___
4. _GC-01-029-2-06
______GGGGAT___AG______CTCTACCT___
5. _GC-01-029-2-06
______GGGGAT___AG______CTCTACCT___
6. _GC-01-029-2-06
______GGGGAT___AG______CTCTACCT___
7. _GC-01-029-2-06
______GGGGAT___AG______CTCTACCT___
8. _GC-01-29-2-6
______GGCCAT___AG______AGAGACAG___
9. _1206_2
______GG___AT___________________________
10. _1206_3
______GG___AT___________________________
11. _1206_7
______GG___AT___________________________
12. _1206_10
______GG___AT___________________________
13. _1206_1_>_FP
______GG___AT___________________________
14. _1206_11_>_F
______GG___AT___________________________
15. _1206_5_>_FP
______GG___AT___________________________
16. _Cabiria
______GG___AT___________________________
17. _RUQ_55
TTAC_________CT___CCTT____________GT
18. _RUQ_55
______GGCCAT___AG______AGAGACAG___
19. _RUQ_55
______________________________CTAC______
20. _RUQ_55
______GG___AT___________________________
21. _KW_292_I-042
______GG___AT___________________________
22. _C0244
______GG___AT___________________________
23. _6B_F466_T2
______GG___AT___________________________
24. _UF_667_Fld#_119_Plt#_1
______GGCCAT___AG______AGAGACAA___
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-01-029-2-06
___ACGTCTATAG______AC___CGAGGGCT
2. _GC-01-029-2-06
___ACGTCTATAG______AC___CGAGGGCT
3. _GC-01-029-2-06
___ACGTCTATAG______AC___CGAGGGCT
4. _GC-01-029-2-06
___ACGTCTATAG______AC___CGAGGGCT
5. _GC-01-029-2-06
___ACGTCTATAG______AC___CGAGGGCT
6. _GC-01-029-2-06
___ACGTCTATAG______AC___CGAGGGCT
7. _GC-01-029-2-06
___ACGTCTATAG______AC______AGGGCT
8. _GC-01-29-2-6
___ACACAGATAG______AC___CGAGGGAG
9. _1206_2
___ACGTCT____________AC___CGAG___CT
10. _1206_3
___ACGTCT____________AC___CGAG___CT
11. _1206_7
___ACGTCT____________AC___CGAG___CT
12. _1206_10
___ACGTCT____________AC___CGAG___CT
13. _1206_1_>_FP
___ACGTCT____________AC___CGAG___CT
14. _1206_11_>_F
___ACGTCT____________AC______AG___CT
15. _1206_5_>_FP
___ACGTCT____________AC___CGAG___CT
16. _Cabiria
___ACGTCT____________AC___CGAG___CT
17. _RUQ_55
ATAC____________CTAG___GG___AG______
18. _RUQ_55
___ACACAGATAG______AC___CGAGGGAG
19. _RUQ_55
___ACGTCT___AG______AC___CGAG___CT
20. _RUQ_55
___ACGTCT____________AC___CGAG___CT
21. _KW_292_I-042
___ACGTCT____________AA___CCAG___CC
22. _C0244
___ACGTCT____________AC___CGAG___CT
23. _6B_F466_T2
___ACGTCT____________AC___GGAG___CT
24. _UF_667_Fld#_119_Plt#_1
___CCACAAAAAG______AA___GGAAGGAG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-01-029-2-06
______ATAG___AGATCTAG___GGATCGAG
2. _GC-01-029-2-06
______ATAG___AGATCTAG___GGATCGAG
3. _GC-01-029-2-06
______ATAG___AGATCTAG___GGATCGAG
4. _GC-01-029-2-06
______ATAG___AGATCTAG___GGATCGAG
5. _GC-01-029-2-06
______ATAG___AGATCTAG___GGATCGAG
6. _GC-01-029-2-06
______ATAG___AGATCTAG___GGATCGAG
7. _GC-01-029-2-06
______ATAG___AGATCTAG___GGATCGAG
8. _GC-01-29-2-6
______ATAG___AGATAGAG___GGATCG___
9. _1206_2
__________________AT_________GG______AG
10. _1206_3
__________________AT_________GG______AG
11. _1206_7
__________________AT_________GG______AG
12. _1206_10
__________________AT_________GG______AG
13. _1206_1_>_FP
__________________AT_________GG______AG
14. _1206_11_>_F
__________________AT_________GG______AG
15. _1206_5_>_FP
__________________AT_________GG______AG
16. _Cabiria
__________________AT_________GG______AG
17. _RUQ_55
TTAC___AGAC____________CC____________
18. _RUQ_55
______ATAG___AGATAGAG___GGATCG___
19. _RUQ_55
_________AG___AGAT_______________CGAG
20. _RUQ_55
__________________AT_________GG______AG
21. _KW_292_I-042
__________________AA_________GG______AG
22. _C0244
__________________AT_________GG______AG
23. _6B_F466_T2
__________________AT_________GG______AG
24. _UF_667_Fld#_119_Plt#_1
______TTAA___GGATAGGG___GGATCG___
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-01-029-2-06
______CC___CCCT___GGGTAACC___ACCC
2. _GC-01-029-2-06
______CC___CCCT___GGGTAACC___ACCC
3. _GC-01-029-2-06
______CC___CCCT___GGGTAACC___ACCC
4. _GC-01-029-2-06
______CC___CCCT___GGGTAACC___ACCC
5. _GC-01-029-2-06
______CC___CCCT___GGGTAACC___ACCC
6. _GC-01-029-2-06
______CC___CCCT___GGGTAACC___ACCC
7. _GC-01-029-2-06
______CC___CCCT___GGGTAACC___ACCC
8. _GC-01-29-2-6
AG___CC___CC______GGACAACC___ACGG
9. _1206_2
____________CCCT______GT___CC___AC___
10. _1206_3
____________CCCT______GT___CC___AC___
11. _1206_7
____________CCCT______GT___CC___AC___
12. _1206_10
____________CCCT______GT___CC___AC___
13. _1206_1_>_FP
____________CCCT______GT___CC___AC___
14. _1206_11_>_F
____________CCCT______GT___CC___AC___
15. _1206_5_>_FP
____________CCCT______GT___CC___AC___
16. _Cabiria
____________CCCT______GT___CC___AC___
17. _RUQ_55
___AC___CTAC___AG_________CCATACCC
18. _RUQ_55
AG___CC___CC______GGACAACC___ACGG
19. _RUQ_55
____________CCCT______GT___CC___AACC
20. _RUQ_55
____________CCCT______GT___CC___AC___
21. _KW_292_I-042
____________AACC______GG___CG___CC___
22. _C0244
____________CCCT______GT___CC___AC___
23. _6B_F466_T2
____________CCCT______GT___CC___AC___
24. _UF_667_Fld#_119_Plt#_1
AG___AC___AC______AGACAGCG___ACGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-01-029-2-06
AGCT_________GGAG___AGCTCTGTAG___
2. _GC-01-029-2-06
AGCT_________GGAG___AGCTCTGTAG___
3. _GC-01-029-2-06
AGCT_________GGAG___AGCTCTGTAG___
4. _GC-01-029-2-06
AGCT_________GGAG___AGCTCTGTAG___
5. _GC-01-029-2-06
AGCT_________GGAG______CTCTGTAG___
6. _GC-01-029-2-06
AGCT_________GGAG___AGCTCTGTAG___
7. _GC-01-029-2-06
AGCT_________GGAG___AGCTCTGTAG___
8. _GC-01-29-2-6
___AG____________AG___AG______ACAG___
9. _1206_2
___CT_________GG_______________GT______
10. _1206_3
___CT_________GG_______________GT______
11. _1206_7
___CT_________GG_______________GT______
12. _1206_10
___CT_________GG_______________GT______
13. _1206_1_>_FP
___CT_________GG_______________GT______
14. _1206_11_>_F
___CT_________GG_______________GT______
15. _1206_5_>_FP
___CT_________GG_______________GT______
16. _Cabiria
___CT_________AG_______________GT______
17. _RUQ_55
______TTAGCCAG___CG______CTGTAGCT
18. _RUQ_55
___AG____________AG___AG______ACAG___
19. _RUQ_55
___CT________________________CTGTAG___
20. _RUQ_55
___CT_________AG_______________GT______
21. _KW_292_I-042
___TT_________AA_______________GG______
22. _C0244
___CT_________AG_______________GT______
23. _6B_F466_T2
___CT_________AG_______________GT______
24. _UF_667_Fld#_119_Plt#_1
___AA____________AG___AA______CCGG___
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-01-029-2-06
GTGTGT___AC___GGAACGCGCCCCAGTT
2. _GC-01-029-2-06
GTGTGT___AC___GGAACGCGCCCC___TT
3. _GC-01-029-2-06
GTGTGT___AC___GGAACGCGCCCCAGTT
4. _GC-01-029-2-06
GTGTGT___AC___GGAACGCGCCCCAGTT
5. _GC-01-029-2-06
GTGTGT___AC___GGAACGCGCCCCAGTT
6. _GC-01-029-2-06
GTGTGT___AC___GGAACGCGCCCCAGTT
7. _GC-01-029-2-06
GTGTGT___AC___GGAACGCGCCCCAGTT
8. _GC-01-29-2-6
ACACAC___AC___CCAGCG___GGGGAGAA
9. _1206_2
________________________CG___CC______TT
10. _1206_3
________________________CG___CC______TT
11. _1206_7
________________________CG___CC______TT
12. _1206_10
________________________CG___CC______TT
13. _1206_1_>_FP
________________________CG___CC______TT
14. _1206_11_>_F
________________________CG___CC______TT
15. _1206_5_>_FP
________________________CG___CC______TT
16. _Cabiria
________________________CG___CC______TT
17. _RUQ_55
_________CTACAATT___CG_________AG___
18. _RUQ_55
ACACAC___AC___CCAGCG___GGGGAGAA
19. _RUQ_55
______GT___AC_________CGCGCC_________
20. _RUQ_55
________________________CG___CC______TT
21. _KW_292_I-042
________________________GG___CC______CT
22. _C0244
________________________CG___CC______TT
23. _6B_F466_T2
________________________CG___CC______TT
24. _UF_667_Fld#_119_Plt#_1
ACACAC___CC___CGGGGG___AGGGGGAG
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1. _GC-01-029-2-06
GGCT___AACTAGCT______CTCC___CTAA
2. _GC-01-029-2-06
GGCT___AACTAGCT______CTCC______AA
3. _GC-01-029-2-06
GGCT___AACTAGCT______CTCC___CTAA
4. _GC-01-029-2-06
GGCT___AACTAGCT______CTCC___CTAA
5. _GC-01-029-2-06
GGCT___AACTAGCT______CTCC______AA
6. _GC-01-029-2-06
GGCT___AACTAGCT______CTCC___CTAA
7. _GC-01-029-2-06
GGCT___AACTAGCT______CTCC___CTAA
8. _GC-01-29-2-6
GGAG___AAAGAG_________AG______AGAA
9. _1206_2
GG______AACTAG_____________________AA
10. _1206_3
GG______AACTAG__________________CTAA
11. _1206_7
GG______AACTAG_____________________AA
12. _1206_10
GG______AACTAG__________________CTAA
13. _1206_1_>_FP
GG______AACTAG__________________CTAA
14. _1206_11_>_F
GG______AACTAG__________________CTAA
15. _1206_5_>_FP
GG______AACTAG__________________CTAA
16. _Cabiria
GG______AACTAG__________________CTAA
17. _RUQ_55
______CG______AGCTTTAA______CC___AA
18. _RUQ_55
GGAG___AAAGAG_________AG______AGAA
19. _RUQ_55
_______________AGCC_______________CT___
20. _RUQ_55
GG______AACTAG__________________CTAA
21. _KW_292_I-042
CG______AACCAG__________________CCGG
22. _C0244
GG______AACTAG__________________CTAA
23. _6B_F466_T2
GG______AACTAG__________________CTAA
24. _UF_667_Fld#_119_Plt#_1
GGAG___ATAAAA_________AG______GGAG
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1. _GC-01-029-2-06
GTAACCAG___ATCTTTTTCTGT_________
2. _GC-01-029-2-06
GTAACCAG___ATCTTTTTCTGT_________
3. _GC-01-029-2-06
GTAACCAG___ATCTTTTTCTGT_________
4. _GC-01-029-2-06
GTAACCAG___ATCTTTTTCTGT_________
5. _GC-01-029-2-06
GTAACCAG___ATCTTTTTCTGT_________
6. _GC-01-029-2-06
GTAACCAG___ATCTTTTTCTGT_________
7. _GC-01-029-2-06
GTAACCAG___ATCTTTTTCTGT_________
8. _GC-01-29-2-6
ACAAGGAG_________AAAA___AC_________
9. _1206_2
___AA____________CT______CT____________
10. _1206_3
___AA____________CT______CT____________
11. _1206_7
___AA____________CT______CT____________
12. _1206_10
___AA____________CT______CT____________
13. _1206_1_>_FP
___AA____________CT______CT____________
14. _1206_11_>_F
___AA____________CT______CT____________
15. _1206_5_>_FP
___AA____________CT______CT____________
16. _Cabiria
___AA____________CT______CT____________
17. _RUQ_55
____________TT___CT____________GTACCC
18. _RUQ_55
ACAAGGAG_________AAAA___AC_________
19. _RUQ_55
GT______AG___AT________________________
20. _RUQ_55
___AA____________CT______CT____________
21. _KW_292_I-042
___AA____________CC______CC____________
22. _C0244
___AA____________CT______CT____________
23. _6B_F466_T2
___AA____________CT______CT____________
24. _UF_667_Fld#_119_Plt#_1
ACAAGGGG_________AGAG___AA_________
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1. _GC-01-029-2-06
CCGTCC______TTAAGG______TTCTCTCG
2. _GC-01-029-2-06
CCGTCC______TTAAGG______TT___CTCG
3. _GC-01-029-2-06
CCGTCC______TTAAGG______TTCTCTCG
4. _GC-01-029-2-06
CCGTCC______TTAAGG______TTCTCTCG
5. _GC-01-029-2-06
CCGTCC______TTAAGG______TTCTCTCG
6. _GC-01-029-2-06
CCGTCC______TTAAGG______TTCTCTCG
7. _GC-01-029-2-06
CCGTCC______TTAAGG______TTCTCTCG
8. _GC-01-29-2-6
___AAGG______AGAAGG______AAAGAGCG
9. _1206_2
___GTCC_________AA_________TT___CTCG
10. _1206_3
___GTCC_________AA_________TT___CTCG
11. _1206_7
___GTCC_________AA_________TT___CTCG
12. _1206_10
___GTCC_________AA_________TT___CTCG
13. _1206_1_>_FP
___GTCC_________AA_________TT___CTCG
14. _1206_11_>_F
___GTCC_________AA_________TT___CTCG
15. _1206_5_>_FP
___GTCC_________AA_________TT___CTCG
16. _Cabiria
___GTCC_________AA_________TT___CTCG
17. _RUQ_55
___GT___GGTT_________GGGG_________CG
18. _RUQ_55
___AAGG______AGAAGG______AAAGAGCG
19. _RUQ_55
___GT_________CT_______________CTCTCG
20. _RUQ_55
___GTCC_________AA_________TT___CTCG
21. _KW_292_I-042
___TTTT_________CC_________TT___CTCG
22. _C0244
___GTCC_________AA_________TT___CTCG
23. _6B_F466_T2
___GTCC_________AA_________TT___CTCG
24. _UF_667_Fld#_119_Plt#_1
___AAAG______GGACGG______AGAGAGCC
 127 128 129 130 131 132 133 134 135      
1. _GC-01-029-2-06
AGCT______ACAGACAGAAX_XX_XX_XX_XX_X
2. _GC-01-029-2-06
AGCT______ACAGACAGAAX_XX_XX_XX_XX_X
3. _GC-01-029-2-06
AGCT______ACAGACAGAAX_XX_XX_XX_XX_X
4. _GC-01-029-2-06
AGCT______ACAGACAGAAX_XX_XX_XX_XX_X
5. _GC-01-029-2-06
AGCT______ACAGACAGAAX_XX_XX_XX_XX_X
6. _GC-01-029-2-06
AGCT______ACAGACAGAAX_XX_XX_XX_XX_X
7. _GC-01-029-2-06
AGCT______ACAGACAGAAX_XX_XX_XX_XX_X
8. _GC-01-29-2-6
AGAG______AC___ACAGAAX_XX_XX_XX_XX_X
9. _1206_2
AGCT_____________________X_XX_XX_XX_XX_X
10. _1206_3
AGCT_____________________X_XX_XX_XX_XX_X
11. _1206_7
AGCT_____________________X_XX_XX_XX_XX_X
12. _1206_10
AGCT_____________________X_XX_XX_XX_XX_X
13. _1206_1_>_FP
AGCT_____________________X_XX_XX_XX_XX_X
14. _1206_11_>_F
AGCT_____________________X_XX_XX_XX_XX_X
15. _1206_5_>_FP
AGCT_____________________X_XX_XX_XX_XX_X
16. _Cabiria
AGCT_____________________X_XX_XX_XX_XX_X
17. _RUQ_55
______CTAT_______________X_XX_XX_XX_XX_X
18. _RUQ_55
AGAG______AC___ACAGAAX_XX_XX_XX_XX_X
19. _RUQ_55
AG________________________X_XX_XX_XX_XX_X
20. _RUQ_55
AGCT_____________________X_XX_XX_XX_XX_X
21. _KW_292_I-042
GGCC_____________________X_XX_XX_XX_XX_X
22. _C0244
AGCT_____________________X_XX_XX_XX_XX_X
23. _6B_F466_T2
AGCT_____________________X_XX_XX_XX_XX_X
24. _UF_667_Fld#_119_Plt#_1
AGGG______AC___AAAAAAX_XX_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._UF_667 GC-01-029-2-06
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018
2._UF_667 GC-01-029-2-06
Location: Tree: 2
Notes: 2
 Mars, 2018
3._UF_667 GC-01-029-2-06
Location: Tree: 3
Notes: 3
 Mars, 2018
4._UF_667 GC-01-029-2-06
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018
5._UF_667 GC-01-029-2-06
Location: Tree: 7
Notes: 7
 Mars, 2018
6._UF_667 GC-01-029-2-06
Location: Tree: 10
Notes: 10
 Mars, 2018
7._UF_667 GC-01-029-2-06
Location: Tree: 11
Notes: 11 > FP4
 Mars, 2018
8._UF_667 GC-01-29-2-6
Location: Field: 1, Block: 2, Rep: 6, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018
9._UF_667
Location: 1206 2
 Dapeng Zhang, 2016
10._UF_667
Location: 1206 3
 Dapeng Zhang, 2016
11._UF_667
Location: 1206 7
 Dapeng Zhang, 2016
12._UF_667
Location: 1206 10
 Dapeng Zhang, 2016
13._UF_667
Location: 1206 1 > FP
 Dapeng Zhang, 2016
14._UF_667
Location: 1206 11 > F
 Dapeng Zhang, 2016
15._UF_667
Location: 1206 5 > FP
 Dapeng Zhang, 2016

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE) Costa Rica

16._UF_667
Location: Cabiria
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

17._UF_667 RUQ 55
 Lambert Motilal, 2023
Population Assignment: 
18._UF_667 RUQ 55
Notes: Reading_Collection
 Mars, 2018
19._UF_667 RUQ 55
 Dapeng Zhang, 2014
20._UF_667 RUQ 55
 Dapeng Zhang, 2016

Indonesian Coffee and Cocoa Research Institute (ICCRI) Indonesia

21._UF_667
Location: KW 292 I-042
 Dapeng Zhang, 2016

Malaysian Cocoa Board (MCB) Malaysia

22._UF_667
Location: C0244
 Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

23._UF_667
Location: 6B F466 T2
 Dapeng Zhang, 2016

USDA-TARS United States of America

24._UF_667 UF 667_Fld#_119_Plt#_1
Location: Field: 119, Tree: 1
 Mars, 2018

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP52 10TcSNP60
11TcSNP75 12TcSNP90 13TcSNP122 14TcSNP131 15TcSNP143
16TcSNP144 17TcSNP150 18TcSNP151 19TcSNP154 20TcSNP174
21TcSNP176 22TcSNP189 23TcSNP193 24TcSNP194 25TcSNP226
26TcSNP230 27TcSNP240 28TcSNP242 29TcSNP290 30TcSNP305
31TcSNP316 32TcSNP329 33TcSNP363 34TcSNP364 35TcSNP372
36TcSNP413 37TcSNP418 38TcSNP421 39TcSNP429 40TcSNP430
41TcSNP448 42TcSNP469 43TcSNP497 44TcSNP519 45TcSNP521
46TcSNP522 47TcSNP529 48TcSNP534 49TcSNP546 50TcSNP547
51TcSNP560 52TcSNP561 53TcSNP577 54TcSNP589 55TcSNP591
56TcSNP602 57TcSNP606 58TcSNP619 59TcSNP640 60TcSNP642
61TcSNP644 62TcSNP645 63TcSNP653 64TcSNP660 65TcSNP689
66TcSNP701 67TcSNP702 68TcSNP723 69TcSNP731 70TcSNP739
71TcSNP751 72TcSNP776 73TcSNP799 74TcSNP800 75TcSNP823
76TcSNP835 77TcSNP836 78TcSNP860 79TcSNP872 80TcSNP878
81TcSNP891 82TcSNP894 83TcSNP899 84TcSNP917 85TcSNP929
86TcSNP944 87TcSNP945 88TcSNP953 89TcSNP994 90TcSNP998
91TcSNP999 92TcSNP1010 93TcSNP1019 94TcSNP1034 95TcSNP1041
96TcSNP1053 97TcSNP1060 98TcSNP1062 99TcSNP1063 100TcSNP1075
101TcSNP1096 102TcSNP1111 103TcSNP1112 104TcSNP1126 105TcSNP1144
106TcSNP1149 107TcSNP1156 108TcSNP1165 109TcSNP1175 110TcSNP1205
111TcSNP1230 112TcSNP1237 113TcSNP1242 114TcSNP1253 115TcSNP1270
116TcSNP1275 117TcSNP1293 118TcSNP1309 119TcSNP1350 120TcSNP1383
121TcSNP1401 122TcSNP1404 123TcSNP1414 124TcSNP1439 125TcSNP1442
126TcSNP1458 127TcSNP1484 128TcSNP1520 129TcSNP1524 130TcSNP1527
131Tcm001s00947643 132Tcm002s20575712 133Tcm003s01336581 134Tcm003s07402719 135Tcm006s26664133