SNP Profiles of GU 168 /H   View Data

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 Key

 1234567891011121314
_Input profile
CCCCAACCAAGGGGCCAAGGGGAAGGAA
1._RUQ_223
____________GG______________
2._GU_168_/H
__________CCGG__AA__________
3._GC-03-023-2-12
CCCCAACCTTCCGGGGAACCGGTTCCTT
4._GC-03-023-2-12
CCCCAACCTTCCGGGGAACCGGTTCCTT
5._GC-03-023-2-12
CCCCAACCTTCCGGGGAACCGGTTCCTT
6._GC-03-023-2-12
CCCCAACCTTCCGGGGAACCGGTTCCTT
7._GC-03-023-2-12
CCCCAACCTTCCGGGGAACCGGTTCCTT
8._GC-03-023-2-12
CCCCAACCTTCCGGGGAACCGGTTCCTT
9._GC-03-023-2-12
CCCCAACCTTCCGGGGAACCGGTTCCTT
10._GC-03-023-2-12
CCCCAACCTTCCGGGGAACCGGTTCCTT
11._GU_168_/H
__________CCGG__AA__________
12._GU_168_/H
__________CCGG__AA__________
13._GU_168_/H
__________CCGG__AA__________
14._GU_168_/H
__________CCGG__AA__________
15._GU_168_/H
__________CCGG__AA__________
16._GU_168_/H
__________CCGG__AA__________
17._GU_168_/H
__________CCGG__AA__________
18._GC-03-023-2-12
CCCCAACCTTCCGGGGAACCGGTTCCTT
19._GC-03-023-2-12
CCCCAACCTTCCGGGGAACCGGTTCCTT
20._GU_168_/H
__________CCGG__AA__________
21._GU_168_/H
__________CCGG__AA__________
22._RUQ_223
__________CC__GG____GG______
23._RUQ_223
__________CCGG__AA__________
24._GC-03-023-2-12
CCAAAAAATTCCAAGGAACCAATTTTGG
25._GU_168_/H
__________CCAA__AA__________
 1516171819202122232425262728
_Input profile
AAAAAAAAGGAAGGAAGGGGGGAAAAGG
1._RUQ_223
__TT__________AA__GG________
2._GU_168_/H
__TTTT____TT__AACCCCGGTT__CC
3._GC-03-023-2-12
TTTTTTTTGGTTCCAACCCCGGTT__CC
4._GC-03-023-2-12
TTTTTTTTGGTTCCAACCCCGGTTTTCC
5._GC-03-023-2-12
TTTTTTTTGGTTCCAACCCCGGTTTTCC
6._GC-03-023-2-12
TTTTTTTTGGTTCCAACCCCGGTTTTCC
7._GC-03-023-2-12
TTTTTTTTGGTTCCAACCCCGGTTTTCC
8._GC-03-023-2-12
TTTTTTTTGGTTCCAACCCCGGTTTTCC
9._GC-03-023-2-12
TTTTTTTTGGTTCCAACCCCGGTTTTCC
10._GC-03-023-2-12
TTTTTTTTGGTTCCAACCCCGGTTTTCC
11._GU_168_/H
__TTTT____TT__AACCCCGGTTTTCC
12._GU_168_/H
__TTTT____TT__AACCCCGGTTTTCC
13._GU_168_/H
__TTTT____TT__AACCCCGGTTTTCC
14._GU_168_/H
__TTTT____TT__AACCCCGGTTTTCC
15._GU_168_/H
__TTTT____TT__AACCCCGGTTTTCC
16._GU_168_/H
__TTTT____TT__AACCCCGGTTTTCC
17._GU_168_/H
__TTTT____TT__AACCCCGGTTTTCC
18._GC-03-023-2-12
TTTTTTTTGGTTCCAACCCCGGTTTTCC
19._GC-03-023-2-12
TTTTTTTTGGTTCC__CCCCGGTTTTCC
20._GU_168_/H
__TTTT____TT____CCCCGGTTTTCC
21._GU_168_/H
__TTTT____TT__AACCCCGGTTTTCC
22._RUQ_223
__TT__TT____CCAACCGGAGTTTT__
23._RUQ_223
__TTTT____TT__AACCGGAGTTTTCC
24._GC-03-023-2-12
CTTTCCTTGGTTTTACCTGGAATTCCTT
25._GU_168_/H
__TTCC____TT__ACCTGGAATTCCTT
 2930313233343536373839404142
_Input profile
TTGGAAGGGGGGGGGGCCTTTTGGGGAA
1._RUQ_223
________GG____________GG____
2._GU_168_/H
____AACCGG__CCGG____TT____AA
3._GC-03-023-2-12
AAGGAACCGGGGCCGGGGAATTGGGGAA
4._GC-03-023-2-12
AAGGAACCGGGGCCGGGGAATTGGGGAA
5._GC-03-023-2-12
AAGGAACCGGGGCCGGGGAATTGGGGAA
6._GC-03-023-2-12
AAGGAACCGGGGCCGGGGAATTGGGGAA
7._GC-03-023-2-12
AAGGAACCGGGGCCGGGGAATTGGGGAA
8._GC-03-023-2-12
AAGGAACCGGGGCCGGGGAATTGGGGAA
9._GC-03-023-2-12
AAGGAACCGGGGCCGGGGAATTGGGGAA
10._GC-03-023-2-12
AAGGAACCGGGGCCGGGGAATTGGGGAA
11._GU_168_/H
____AACCGG__CCGG____TT____AA
12._GU_168_/H
____AACCGG__CCGG____TT____AA
13._GU_168_/H
____AACCGG__CCGG____TT____AA
14._GU_168_/H
____AACCGG__CCGG____TT____AA
15._GU_168_/H
____AACCGG__CCGG____TT____AA
16._GU_168_/H
____AACCGG__CCGG____TT____AA
17._GU_168_/H
____AACCGG__CCGG____TT____AA
18._GC-03-023-2-12
AAGGAACCGGGGCCGGGGAATTGGGGAA
19._GC-03-023-2-12
AAGGAACCGGGGCCGGGGAATTGGGGAA
20._GU_168_/H
____AACCGG__CCGG____TT____AA
21._GU_168_/H
____AACCGG__CCGG____TT____AA
22._RUQ_223
__GGAACCGG__CC________GGGGAA
23._RUQ_223
____AACCGG__CCGG____AT____AA
24._GC-03-023-2-12
AAGGAACCAAGGCCGGGGAATTGGGGAA
25._GU_168_/H
____AACCAA__CCGG____TT____AA
 4344454647484950515253545556
_Input profile
AAGGGGGGTTGGAACCAAGGCCGGCCCC
1._RUQ_223
________________AA______CCCC
2._GU_168_/H
______GG________AA__GG__CCCC
3._GC-03-023-2-12
TTGGGGGGTTCC__CCAAGGGGGGCCCC
4._GC-03-023-2-12
TTGGGGGGTTCC__CCAAGGGGGGCCCC
5._GC-03-023-2-12
TTGGGGGGTTCC__CCAAGGGGGGCCCC
6._GC-03-023-2-12
TTGGGGGGTTCC__CCAAGGGGGGCCCC
7._GC-03-023-2-12
TTGGGGGGTTCC__CCAAGGGGGGCCCC
8._GC-03-023-2-12
TTGGGGGGTTCC__CCAAGGGGGGCCCC
9._GC-03-023-2-12
TTGGGGGGTTCC__CCAAGGGGGGCCCC
10._GC-03-023-2-12
TTGGGGGGTTCC__CCAAGGGGGGCCCC
11._GU_168_/H
______GG________AA__GG__CCCC
12._GU_168_/H
______GG________AA__GG__CCCC
13._GU_168_/H
______GG________AA__GG__CCCC
14._GU_168_/H
______GG________AA__GG__CCCC
15._GU_168_/H
______GG________AA__GG__CCCC
16._GU_168_/H
______GG________AA__GG__CCCC
17._GU_168_/H
______GG________AA__GG__CCCC
18._GC-03-023-2-12
TTGGGGGGTTCC__CCAAGGGGGG__CC
19._GC-03-023-2-12
TTGGGGGGTTCC__CCAAGGGGGGCCCC
20._GU_168_/H
______GG________AA__GG__CCCC
21._GU_168_/H
______GG________AA__GG____CC
22._RUQ_223
__________CC____AA__GG__CCCC
23._RUQ_223
______AG________AA__GG__CCCC
24._GC-03-023-2-12
TTGGGGGGTTCC__CCCCGGTTAACCCC
25._GU_168_/H
______GG________CC__TT__CCCC
 5758596061626364656667686970
_Input profile
GGGGGGAGAACCAAAACCAAAAAACCGG
1._RUQ_223
__CC______GGAA________AACC__
2._GU_168_/H
____CC____GG________________
3._GC-03-023-2-12
CCCCCCAAAAGGAATTGGTTTTAAGG__
4._GC-03-023-2-12
CCCCCCAAAAGGAATTGGTTTTAAGG__
5._GC-03-023-2-12
CCCCCCAAAAGGAATTGGTTTTAAGG__
6._GC-03-023-2-12
CCCCCCAAAAGGAATTGGTTTTAAGG__
7._GC-03-023-2-12
CCCCCCAAAAGGAATTGGTTTTAAGG__
8._GC-03-023-2-12
CCCCCCAAAAGGAATTGGTTTTAAGG__
9._GC-03-023-2-12
CCCCCCAAAAGGAATTGGTTTTAAGG__
10._GC-03-023-2-12
CCCCCCAAAAGGAATTGGTTTTAAGG__
11._GU_168_/H
____CC____GG________________
12._GU_168_/H
____CC____GG________________
13._GU_168_/H
____CC____GG________________
14._GU_168_/H
____CC____GG________________
15._GU_168_/H
____CC____GG________________
16._GU_168_/H
____CC____GG________________
17._GU_168_/H
____CC____GG________________
18._GC-03-023-2-12
CCCCCCAAAAGGAATTGGTTTTAAGG__
19._GC-03-023-2-12
CCCCCCAAAAGGAATTGGTTTTAAGG__
20._GU_168_/H
____CC____GG________________
21._GU_168_/H
____CC____GG________________
22._RUQ_223
__CCCC____GGAATT____TTAA____
23._RUQ_223
____CC____GG________________
24._GC-03-023-2-12
CCTTTTAAAAGGGGTTTTTTTTAAGG__
25._GU_168_/H
____TT____GG________________
 7172737475767778798081   
_Input profile
CCGGGGGGCCGGGGGGAAGGGGX_XX_XX_X
1._RUQ_223
GG____GG____________AGX_XX_XX_X
2._GU_168_/H
GGCC______CCGG__AACCGGX_XX_XX_X
3._GC-03-023-2-12
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
4._GC-03-023-2-12
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
5._GC-03-023-2-12
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
6._GC-03-023-2-12
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
7._GC-03-023-2-12
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
8._GC-03-023-2-12
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
9._GC-03-023-2-12
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
10._GC-03-023-2-12
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
11._GU_168_/H
GGCC______CCGG__AACCGGX_XX_XX_X
12._GU_168_/H
GGCC______CCGG__AACCGGX_XX_XX_X
13._GU_168_/H
GGCC______CCGG__AACCGGX_XX_XX_X
14._GU_168_/H
GGCC______CCGG__AACCGGX_XX_XX_X
15._GU_168_/H
GGCC______CCGG__AACCGGX_XX_XX_X
16._GU_168_/H
GGCC______CCGG__AACCGGX_XX_XX_X
17._GU_168_/H
GGCC______CCGG__AACCGGX_XX_XX_X
18._GC-03-023-2-12
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
19._GC-03-023-2-12
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
20._GU_168_/H
GGCC______CCGG__AACCGGX_XX_XX_X
21._GU_168_/H
GGCC______CCGG__AACCGGX_XX_XX_X
22._RUQ_223
GGCC____CC__________AGX_XX_XX_X
23._RUQ_223
GGCC______CCGG__AACTAGX_XX_XX_X
24._GC-03-023-2-12
GGCCCC__CCTTCCCCAATTGGX_XX_XX_X
25._GU_168_/H
GGCC______TTCC__AATTGGX_XX_XX_X

Input profile: GU_168_/H GC-03-23-2-12

 
Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 12, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._GU_168_/H RUQ_223

73.5 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._GU_168_/H

48.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 7 > FP
 Dapeng Zhang, 2016

3._GU_168_/H GC-03-023-2-12

48.1 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

4._GU_168_/H GC-03-023-2-12

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

5._GU_168_/H GC-03-023-2-12

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

6._GU_168_/H GC-03-023-2-12

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP1
 Mars, 2018

7._GU_168_/H GC-03-023-2-12

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

8._GU_168_/H GC-03-023-2-12

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

9._GU_168_/H GC-03-023-2-12

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._GU_168_/H GC-03-023-2-12

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

11._GU_168_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

12._GU_168_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 4
 Dapeng Zhang, 2016

13._GU_168_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 6
 Dapeng Zhang, 2016

14._GU_168_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 13
 Dapeng Zhang, 2016

15._GU_168_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 15
 Dapeng Zhang, 2016

16._GU_168_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 1 > FP
 Dapeng Zhang, 2016

17._GU_168_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 10 > F
 Dapeng Zhang, 2016

18._GU_168_/H GC-03-023-2-12

46.8 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP3
 Mars, 2018

19._GU_168_/H GC-03-023-2-12

46.8 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

20._GU_168_/H

45.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 3
 Dapeng Zhang, 2016

21._GU_168_/H

45.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 12 > F
 Dapeng Zhang, 2016

22._GU_168_/H RUQ_223

44.4 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

23._GU_168_/H RUQ_223

44.1 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

24._GU_168_/H GC-03-023-2-12

34.6 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

25._GU_168_/H

33.8 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 16
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1383 20TcSNP1414
21TcSNP1439 22TcSNP144 23TcSNP1442 24TcSNP1458 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP28 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998