SNP Profiles of "GU 168 /H"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-03-023-2-12
GGGGTTGGCCTTCCTTAATTTTAAGGAA
2. _GC-03-023-2-12
GGGGTTGGCCTTCCTTAATTTTAAGGAA
3. _GC-03-023-2-12
GGGGTTGGCCTTCCTT___TTTTAAGGAA
4. _GC-03-023-2-12
GGGGTTGGCCTTCCTTAATTTTAAGGAA
5. _GC-03-023-2-12
GGGGTTGGCCTTCCTTAATTTTAAGGAA
6. _GC-03-023-2-12
GGGGTTGGCCTTCCTTAATT___AAGGAA
7. _GC-03-023-2-12
GGGGTTGGCCTTCCTTAATTTTAAGGAA
8. _GC-03-023-2-12
GGGGTTGGCCTTCCTTAATTTTAAGGAA
9. _GC-03-023-2-12
GGGGTTGGCCTTCCTTAATTTTAAGGAA
10. _GC-03-023-2-12
GGGGTTGGCCTTCCTTAATTTTAAGGAA
11. _GC-03-023-2-12
GGGGTTGGCCTTCCCTACTTCCAAGGAA
12. _GC-03-23-2-12
GGCCTTGGGGAACCAAAAAAAATTGGAA
13. _3212_2
GG___TT_______________AATTTT______AA
14. _3212_3
GG___TT__________________TTTT______AA
15. _3212_4
GG___TT_______________AATTTT______AA
16. _3212_6
GG___TT_______________AATTTT______AA
17. _3212_13
GG___TT_______________AATTTT______AA
18. _3212_15
GG___TT_______________AATTTT______AA
19. _3212_1_>_FP
GG___TT_______________AATTTT______AA
20. _3212_10_>_F
GG___TT_______________AATTTT______AA
21. _3212_12_>_F
GG___TT_______________AATTTT______AA
22. _3212_7_>_FP
GG___TT_______________AATT_________AA
23. _3212_16
GG___TT_______________ACTTCC______AA
24. _RUQ_223
_______________TTCC___AATTTT___GGAA
25. _RUQ_223
GG___AT_______________AATTTT______AA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-03-023-2-12
CCGGGGCCAAGGGGAATTGGGGTTCCGG
2. _GC-03-023-2-12
CCGGGGCCAAGGGGAATTGGGGTTCCGG
3. _GC-03-023-2-12
CCGGGGCCAAGGGGAATTGGGGTTCCGG
4. _GC-03-023-2-12
CCGGGGCCAAGGGGAATTGGGGTTCCGG
5. _GC-03-023-2-12
CCGGGGCCAAGGGGAATTGGGGTTCCGG
6. _GC-03-023-2-12
CCGGGGCCAAGGGGAATTGGGGTTCCGG
7. _GC-03-023-2-12
CCGGGGCCAAGGGGAATTGGGGTTCCGG
8. _GC-03-023-2-12
CCGGGGCCAAGGGGAATTGGGGTTCCGG
9. _GC-03-023-2-12
CCGGGGCCAAGGGGAATTGGGGTTCCGG
10. _GC-03-023-2-12
CCGGGGCCAAGGGGAATTGGGGTTCCGG
11. _GC-03-023-2-12
CCAAGGCCAAGGGGAATTGGGGTTCCAA
12. _GC-03-23-2-12
GGGGGGGGTTGGGGAAAAGGGGTTGG___
13. _3212_2
CCGG___CC_________AA______GG______GG
14. _3212_3
CCGG___CC_________AA______GG______GG
15. _3212_4
CCGG___CC_________AA______GG______GG
16. _3212_6
CCGG___CC_________AA______GG______GG
17. _3212_13
CCGG___CC_________AA______GG______GG
18. _3212_15
CCGG___CC_________AA______GG______GG
19. _3212_1_>_FP
CCGG___CC_________AA______GG______GG
20. _3212_10_>_F
CCGG___CC_________AA______GG______GG
21. _3212_12_>_F
CCGG___CC_________AA______GG______GG
22. _3212_7_>_FP
CCGG___CC_________AA______GG______GG
23. _3212_16
CCAA___CC_________AA______GG______AA
24. _RUQ_223
CCGG___CC___GGGGAA____________CCAG
25. _RUQ_223
CCGG___CC_________AA______AG______AG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-03-023-2-12
___CCAACCGGGGGGCCCCCCAACCAGAA
2. _GC-03-023-2-12
___CCAACCGGGGGGCCCCCCAACCAGAA
3. _GC-03-023-2-12
___CCAACCGGGGGGCCCCCCAACCAGAA
4. _GC-03-023-2-12
___CCAACCGGGGGGCCCCCCAACCAGAA
5. _GC-03-023-2-12
___CCAACCGGGGGGCCCCCCAACCAGAA
6. _GC-03-023-2-12
___CCAACCGGGGGGCCCCCCAACCAGAA
7. _GC-03-023-2-12
___CCAACCGGGGGGCCCCCCAACCAGAA
8. _GC-03-023-2-12
___CCAACCGGGGGG___CCCCAACCAGAA
9. _GC-03-023-2-12
___CCAACCGGGGGGCCCCCCAACCAGAA
10. _GC-03-023-2-12
___CCAACCGGGGGGCCCCCCAACCAGAA
11. _GC-03-023-2-12
___CCCCTTGGTTAACCCCTTAATTGGAA
12. _GC-03-23-2-12
AACCAA___GGCCGGCCCCGG___GG___AG
13. _3212_2
______AACC___GG___CCCC______CCAG___
14. _3212_3
______AACC___GG___CCCC______CCAG___
15. _3212_4
______AACC___GG___CCCC______CCAG___
16. _3212_6
______AACC___GG___CCCC______CCAG___
17. _3212_13
______AACC___GG___CCCC______CCAG___
18. _3212_15
______AACC___GG___CCCC______CCAG___
19. _3212_1_>_FP
______AACC___GG___CCCC______CCAG___
20. _3212_10_>_F
______AACC___GG___CCCC______CCAG___
21. _3212_12_>_F
______AACC___GG______CC______CCAG___
22. _3212_7_>_FP
______AACC___GG___CCCC______CCAG___
23. _3212_16
______CCTT___TT___CCCC______TTGG___
24. _RUQ_223
______AACC___GG___CCCCCC___CC______
25. _RUQ_223
______AACC___GG___CCCC______CCAA___
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-03-023-2-12
AACCCCGGAAGGTTTTAAGG___GGCCCC
2. _GC-03-023-2-12
AACCCCGGAAGGTTTTAAGG___GGCCCC
3. _GC-03-023-2-12
AACCCCGGAAGGTTTTAAGG___GGCCCC
4. _GC-03-023-2-12
AACCCCGGAAGGTTTTAAGG___GGCCCC
5. _GC-03-023-2-12
AACCCCGGAAGGTTTTAAGG___GGCCCC
6. _GC-03-023-2-12
AACCCCGGAAGGTTTTAAGG___GGCCCC
7. _GC-03-023-2-12
AACCCCGGAAGGTTTTAAGG___GGCCCC
8. _GC-03-023-2-12
AACCCCGGAAGGTTTTAAGG___GGCCCC
9. _GC-03-023-2-12
AACCCCGGAAGGTTTTAAGG___GGCCCC
10. _GC-03-023-2-12
AACCCCGGAAGGTTTTAAGG___GGCCCC
11. _GC-03-023-2-12
AATTCCGGGGTTTTTTAAGG___GGCCCC
12. _GC-03-23-2-12
AA______CCAACCAAAAAACCGGCC___GG
13. _3212_2
_________GG_____________________GG___CC
14. _3212_3
_________GG_____________________GG___CC
15. _3212_4
_________GG_____________________GG___CC
16. _3212_6
_________GG_____________________GG___CC
17. _3212_13
_________GG_____________________GG___CC
18. _3212_15
_________GG_____________________GG___CC
19. _3212_1_>_FP
_________GG_____________________GG___CC
20. _3212_10_>_F
_________GG_____________________GG___CC
21. _3212_12_>_F
_________GG_____________________GG___CC
22. _3212_7_>_FP
_________GG_____________________GG___CC
23. _3212_16
_________GG_____________________GG___CC
24. _RUQ_223
______CCGGAA______TTAA______GGCCCC
25. _RUQ_223
_________GG_____________________GG___CC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-03-023-2-12
CCGGCCGGCCAACCGGCCTTCCCCGGGG
2. _GC-03-023-2-12
CCGGCCGGCCAACCGGCCTTCCCCGGGG
3. _GC-03-023-2-12
CCGGCCGGCCAACCGGCCTTCCCCGGGG
4. _GC-03-023-2-12
CCGGCCGGCCAACCGGCCTTCCCCGGGG
5. _GC-03-023-2-12
CCGGCCGGCCAACCGGCCTTCCCCGGGG
6. _GC-03-023-2-12
CCGGCCGGCCAACCGGCCTTCCCCGGGG
7. _GC-03-023-2-12
CCGGCCGGCCAACCGGCCTTCCCCGGGG
8. _GC-03-023-2-12
CCGGCCGGCCAACCGGCCTTCCCCGGGG
9. _GC-03-023-2-12
CCGGCCGGCCAACCGGCCTTCCCCGGGG
10. _GC-03-023-2-12
CCGGCCGGCCAACCGGCCTTCCCCGGGG
11. _GC-03-023-2-12
CC___TTCCCCAATTGGTTTTCCCCAAGG
12. _GC-03-23-2-12
GGGGGGGGGGAAGGGG___AA___GGGGCC
13. _3212_2
______CCGG___AACCGG_________CCGG___
14. _3212_3
______CCGG___AACCGG_________CCGG___
15. _3212_4
______CCGG___AACCGG_________CCGG___
16. _3212_6
______CCGG___AACCGG_________CCGG___
17. _3212_13
______CCGG___AACCGG_________CCGG___
18. _3212_15
______CCGG___AACCGG_________CCGG___
19. _3212_1_>_FP
______CCGG___AACCGG_________CCGG___
20. _3212_10_>_F
______CCGG___AACCGG_________CCGG___
21. _3212_12_>_F
______CCGG___AACCGG_________CCGG___
22. _3212_7_>_FP
______CCGG___AACCGG_________CCGG___
23. _3212_16
______TTCC___AATTGG_________CCAA___
24. _RUQ_223
___-_______________AGCC______CC___GG
25. _RUQ_223
______CCGG___AACTAG_________CCGG___
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-03-023-2-12
AACCGGTTCCTTCCCCTTCCTTTTTT___
2. _GC-03-023-2-12
AACCGGTTCCTTCCCCTTCCTTTTTT___
3. _GC-03-023-2-12
AACCGGTTCCTTCCCCTTCCTTTTTT___
4. _GC-03-023-2-12
AACCGGTTCCTTCCCCTTCCTTTTTT___
5. _GC-03-023-2-12
AACCGGTTCCTTCCCCTTCCTTTTTT___
6. _GC-03-023-2-12
AACCGGTTCCTTCCCCTTCCTTTTTT___
7. _GC-03-023-2-12
AACCGGTTCCTTCCCCTTCCTTTTTT___
8. _GC-03-023-2-12
AACCGGTTCCTTCCCCTTCCTTTTTT___
9. _GC-03-023-2-12
AACCGGTTCCTTCCCCTTCCTTTTTT___
10. _GC-03-023-2-12
AACCGGTTCCTTCCCCTTCCTTTTTT___
11. _GC-03-023-2-12
AACCAATTTTTTTTCCGGCCTTCCTT___
12. _GC-03-23-2-12
AAGGGG______AAGG___AA___AAAAAA___
13. _3212_2
AA_________CC______CC______TTTT______
14. _3212_3
AA_________CC______CC______TTTT______
15. _3212_4
AA_________CC______CC______TTTT______
16. _3212_6
AA_________CC______CC______TTTT______
17. _3212_13
AA_________CC______CC______TTTT______
18. _3212_15
AA_________CC______CC______TTTT______
19. _3212_1_>_FP
AA_________CC______CC______TTTT______
20. _3212_10_>_F
AA_________CC______CC______TTTT______
21. _3212_12_>_F
AA_________CC______CC______TTTT______
22. _3212_7_>_FP
AA_________CC______CC______TTTT______
23. _3212_16
AA_________TT______CC______TTCC______
24. _RUQ_223
______GGTT__________________TT___TT___
25. _RUQ_223
AA_________CC______CC______TTTT___CC
 85 86 87 88 89 90 91 92 93 94 95 96   
1. _GC-03-023-2-12
GGTTCCCCCCGGCCCCGGCCAACCX_XX_X
2. _GC-03-023-2-12
GGTTCCCCCCGGCCCCGGCCAACCX_XX_X
3. _GC-03-023-2-12
GGTTCCCCCCGGCCCCGGCCAACCX_XX_X
4. _GC-03-023-2-12
GGTTCCCCCCGGCCCCGGCCAACCX_XX_X
5. _GC-03-023-2-12
GGTTCCCCCCGGCCCCGGCCAACCX_XX_X
6. _GC-03-023-2-12
GGTTCCCCCCGGCCCCGGCCAACCX_XX_X
7. _GC-03-023-2-12
GGTTCCCCCCGGCCCCGGCCAACCX_XX_X
8. _GC-03-023-2-12
GGTTCCCCCCGGCCCCGGCCAACCX_XX_X
9. _GC-03-023-2-12
GGTTCCCCCCGGCCCCGGCCAACCX_XX_X
10. _GC-03-023-2-12
GGTTCCCCCCGGCCCCGGCCAACCX_XX_X
11. _GC-03-023-2-12
GGTTTTCTGGAATTCCAAAAAAAAX_XX_X
12. _GC-03-23-2-12
GGAAGGGGGGGGGGCC___CCAACCX_XX_X
13. _3212_2
___TT___CCCCGGCC_______________X_XX_X
14. _3212_3
___TT___CCCCGGCC_______________X_XX_X
15. _3212_4
___TT___CCCCGGCC_______________X_XX_X
16. _3212_6
___TT___CCCCGGCC_______________X_XX_X
17. _3212_13
___TT___CCCCGGCC_______________X_XX_X
18. _3212_15
___TT___CCCCGGCC_______________X_XX_X
19. _3212_1_>_FP
___TT___CCCCGGCC_______________X_XX_X
20. _3212_10_>_F
___TT___CCCCGGCC_______________X_XX_X
21. _3212_12_>_F
___TT___CCCCGGCC_______________X_XX_X
22. _3212_7_>_FP
___TT___CCCCGGCC_______________X_XX_X
23. _3212_16
___TT___CTGGAATT_______________X_XX_X
24. _RUQ_223
______CCCCGGAG__________________X_XX_X
25. _RUQ_223
___TT___CCGGAGCC_______________X_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._GU_168_/H GC-03-023-2-12
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018
2._GU_168_/H GC-03-023-2-12
Location: Tree: 2
Notes: 2
 Mars, 2018
3._GU_168_/H GC-03-023-2-12
Location: Tree: 3
Notes: 3
 Mars, 2018
4._GU_168_/H GC-03-023-2-12
Location: Tree: 4
Notes: 4
 Mars, 2018
5._GU_168_/H GC-03-023-2-12
Location: Tree: 6
Notes: 6
 Mars, 2018
6._GU_168_/H GC-03-023-2-12
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018
7._GU_168_/H GC-03-023-2-12
Location: Tree: 10
Notes: 10 > FP1
 Mars, 2018
8._GU_168_/H GC-03-023-2-12
Location: Tree: 12
Notes: 12 > FP3
 Mars, 2018
9._GU_168_/H GC-03-023-2-12
Location: Tree: 13
Notes: 13
 Mars, 2018
10._GU_168_/H GC-03-023-2-12
Location: Tree: 15
Notes: 15
 Mars, 2018
11._GU_168_/H GC-03-023-2-12
Location: Tree: 16
Notes: 16
 Mars, 2018
12._GU_168_/H GC-03-23-2-12
Location: Field: 3, Block: 2, Rep: 12, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018
13._GU_168_/H
Location: 3212 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
14._GU_168_/H
Location: 3212 3
 Dapeng Zhang, 2016
15._GU_168_/H
Location: 3212 4
 Dapeng Zhang, 2016
16._GU_168_/H
Location: 3212 6
 Dapeng Zhang, 2016
17._GU_168_/H
Location: 3212 13
 Dapeng Zhang, 2016
18._GU_168_/H
Location: 3212 15
 Dapeng Zhang, 2016
19._GU_168_/H
Location: 3212 1 > FP
 Dapeng Zhang, 2016
20._GU_168_/H
Location: 3212 10 > F
 Dapeng Zhang, 2016
21._GU_168_/H
Location: 3212 12 > F
 Dapeng Zhang, 2016
22._GU_168_/H
Location: 3212 7 > FP
 Dapeng Zhang, 2016
23._GU_168_/H
Location: 3212 16
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

24._GU_168_/H RUQ 223
 Dapeng Zhang, 2014
25._GU_168_/H RUQ 223
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP25 2TcSNP28 3TcSNP32 4TcSNP42 5TcSNP60
6TcSNP75 7TcSNP90 8TcSNP122 9TcSNP144 10TcSNP150
11TcSNP151 12TcSNP154 13TcSNP174 14TcSNP193 15TcSNP226
16TcSNP230 17TcSNP240 18TcSNP242 19TcSNP316 20TcSNP329
21TcSNP364 22TcSNP372 23TcSNP413 24TcSNP418 25TcSNP429
26TcSNP430 27TcSNP448 28TcSNP469 29TcSNP497 30TcSNP521
31TcSNP529 32TcSNP534 33TcSNP547 34TcSNP560 35TcSNP561
36TcSNP577 37TcSNP591 38TcSNP602 39TcSNP606 40TcSNP619
41TcSNP645 42TcSNP653 43TcSNP689 44TcSNP701 45TcSNP702
46TcSNP723 47TcSNP731 48TcSNP751 49TcSNP776 50TcSNP799
51TcSNP823 52TcSNP836 53TcSNP860 54TcSNP872 55TcSNP878
56TcSNP891 57TcSNP894 58TcSNP899 59TcSNP917 60TcSNP929
61TcSNP944 62TcSNP953 63TcSNP994 64TcSNP998 65TcSNP999
66TcSNP1034 67TcSNP1041 68TcSNP1060 69TcSNP1062 70TcSNP1063
71TcSNP1075 72TcSNP1096 73TcSNP1111 74TcSNP1126 75TcSNP1144
76TcSNP1149 77TcSNP1156 78TcSNP1165 79TcSNP1175 80TcSNP1242
81TcSNP1253 82TcSNP1270 83TcSNP1309 84TcSNP1350 85TcSNP1383
86TcSNP1414 87TcSNP1439 88TcSNP1442 89TcSNP1458 90TcSNP1484
91TcSNP1520 92Tcm001s00947643 93Tcm002s20575712 94Tcm003s01336581 95Tcm003s07402719
96Tcm006s26664133