SNP Profiles of GU 133 /C   View Data

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 Key

 1234567891011121314
_Input profile
CCACGGCCAAGGGGCCAAGGGGAAGGAA
1._GC-01-116-6-13
CCACGGCCAAGGGGCCAAGGGGAAGGAA
2._RUQ_190
____________GG______________
3._RUQ_190
__________CC________GG______
4._GU_133_/C
__________CCGG__AA__________
5._GU_133_/C
__________CCGG__AA__________
6._RUQ_190
__________CCGG__AA__________
7._GU_133_/C
__________CCGG__AA__________
8._GU_133_/C
__________CCGG__AA__________
9._GU_133_/C
__________CCGG__AA__________
10._GU_133_/C
__________CCGG__AA__________
11._GU_133_/C
__________CCGG__AA__________
12._GU_133_/C
__________CCGG__AA__________
13._GU_133_/C
__________CCGG__AA__________
14._GC-01-116-6-13
CCACGGCCTTCCGGGGAACCGGTTCCTT
15._GC-08-164-4-07
CCACGGCCTTCCGGGGAACCGGTTCCTT
16._GU_133_/C
__________CCGG__AA__________
17._GU_133_/C
__________CCGG__AA__________
18._GC-08-164-4-07
CCACGGCCTTCCGGGGAACCGGTTCCTT
19._GC-08-164-4-07
CCACGGCCTTCCGGGGAACCGGTTCCTT
20._GC-01-116-6-13
CCACGGCCTTCCGGGGAACCGGTTCCTT
21._GC-01-116-6-13
CCACGGCCTTCCGGGGAACCGGTTCCTT
22._GC-01-116-6-13
CCACGGCCTTCCGGGGAACCGGTTCCTT
23._GC-08-164-4-07
CCACGGCCTTCCGGGGAACCGGTTCCTT
24._GC-08-164-4-07
CCACGGCCTTCCGGGGAACCGGTTCCTT
25._GC-08-164-4-07
CCACGGCCTTCCGGGGAACCGGTTCCTT
26._GC-01-116-6-13
CCACGGCCTTCCGGGGAACCGGTTCCTT
27._RUQ_190
__________CC__GG____GG______
 1516171819202122232425262728
_Input profile
AAAAAAAACCGGAAGGAAGGCGGGAAAA
1._GC-01-116-6-13
AAAAAAAA__GGAAGGAAGGCGGGAAAA
2._RUQ_190
__TT____________AA__CG______
3._RUQ_190
______________CCAA__CG____TT
4._GU_133_/C
____TT__________AACCCGGGTTTT
5._GU_133_/C
____TT______TT__AACCCGGGTTTT
6._RUQ_190
__TTTT__CC__TT__AACCCGGGGTTT
7._GU_133_/C
__TTTT______TT__AACCCGGGTTTT
8._GU_133_/C
__TTTT______TT__AACCCGGGTTTT
9._GU_133_/C
__TTTT______TT__AACCCGGGTTTT
10._GU_133_/C
__TTTT______TT__AACCCGGGTTTT
11._GU_133_/C
__TTTT______TT__AACCCGGGTTTT
12._GU_133_/C
__TTTT______TT__AACCCGGGTTTT
13._GU_133_/C
__TTTT______TT__AACCCGGGTTTT
14._GC-01-116-6-13
TT__TTTT______CCAACCCGGGTTTT
15._GC-08-164-4-07
TT__TTTT__GGTTCCAACCCGGGTTTT
16._GU_133_/C
__TTTT______TT__AACCCGGGTTTT
17._GU_133_/C
__TTTT______TT__AACCCGGGTTTT
18._GC-08-164-4-07
TTTTTTTT__GGTTCCAACCCGGGTTTT
19._GC-08-164-4-07
TTTTTTTT__GGTTCCAACCCGGGTTTT
20._GC-01-116-6-13
TTTTTTTT__GGTTCCAACCCGGGTTTT
21._GC-01-116-6-13
TTTTTTTT__GGTTCCAACCCGGGTTTT
22._GC-01-116-6-13
TTTTTTTT__GGTTCCAACCCGGGTTTT
23._GC-08-164-4-07
TTTTTTTT__GGTTCCAACCCGGGTTTT
24._GC-08-164-4-07
TTTTTTTT__GGTTCCAACCCGGGTTTT
25._GC-08-164-4-07
TTTTTTTT__GGTTCCAACCCGGGTTTT
26._GC-01-116-6-13
TTTTTTTT__GGTTCCAACCCGGGTTTT
27._RUQ_190
__TT__TT______CCAACCCGGGTTTT
 2930313233343536373839404142
_Input profile
GGTTGGAAGGGGGGGGGGCCTTATGGGG
1._GC-01-116-6-13
GGTTGGAAGGGGGGGGGG__TTATGGGG
2._RUQ_190
__________GG____________GG__
3._RUQ_190
____GGAAGGGG______________GG
4._GU_133_/C
CC____AACC____CCGG____AT____
5._GU_133_/C
CC____AACCGG__CCGG____AT____
6._RUQ_190
CC____AACCGG__CCGG____AT____
7._GU_133_/C
CC____AACCGG__CCGG____AT____
8._GU_133_/C
CC____AACCGG__CCGG____AT____
9._GU_133_/C
CC____AACCGG__CCGG____AT____
10._GU_133_/C
CC____AACCGG__CCGG____AT____
11._GU_133_/C
CC____AACCGG__CCGG____AT____
12._GU_133_/C
CC____AACCGG__CCGG____AT____
13._GU_133_/C
CC____AACCGG__CCGG____AT____
14._GC-01-116-6-13
CCAAGGAACC__GGCCGG__AAATGGGG
15._GC-08-164-4-07
CCAAGGAACCGGGGCCGGGGAAATGGGG
16._GU_133_/C
CC____AACC____CCGG____AT____
17._GU_133_/C
CC______CCGG__CCGG____AT____
18._GC-08-164-4-07
CCAAGGAACCGGGGCCGGGGAAATGGGG
19._GC-08-164-4-07
CCAAGGAACCGGGGCCGGGGAAATGGGG
20._GC-01-116-6-13
CCAAGGAACCGGGGCCGGGGAAATGGGG
21._GC-01-116-6-13
CCAAGGAACCGGGGCCGGGGAAATGGGG
22._GC-01-116-6-13
CCAAGGAACCGGGGCCGGGGAAATGGGG
23._GC-08-164-4-07
CCAAGGAACCGGGGCCGGGGAAATGGGG
24._GC-08-164-4-07
CCAAGGAACCGGGGCCGGGGAAATGGGG
25._GC-08-164-4-07
CCAAGG__CCGGGGCCGGGGAAATGGGG
26._GC-01-116-6-13
CCAAGGAACC__GGCCGGGGAAATGGGG
27._RUQ_190
____GGAACCGG__CC________GGGG
 4344454647484950515253545556
_Input profile
AAAAGGGGGGTTGGAACCAAGGCCGGCC
1._GC-01-116-6-13
AAAAGGGGGGTTGGAACCAAGGCCGGCC
2._RUQ_190
__________________AA______CC
3._RUQ_190
AATT________CC____________CC
4._GU_133_/C
AA______GG________AA__GG__CC
5._GU_133_/C
AA______GG________AA__GG__CC
6._RUQ_190
AA______GG________AA__GG__CC
7._GU_133_/C
AA______GG________AA__GG__CC
8._GU_133_/C
AA______GG________AA__GG__CC
9._GU_133_/C
AA______GG________AA__GG__CC
10._GU_133_/C
AA______GG________AA__GG__CC
11._GU_133_/C
AA______GG________AA__GG__CC
12._GU_133_/C
AA______GG________AA__GG__CC
13._GU_133_/C
AA______GG________AA__GG__CC
14._GC-01-116-6-13
AA__GGGGGGTTCC__CCAAGGGGGGCC
15._GC-08-164-4-07
AATTGGGGGGTTCC__CCAAGGGGGGCC
16._GU_133_/C
AA______GG________AA__GG__CC
17._GU_133_/C
AA______GG________AA__GG__CC
18._GC-08-164-4-07
AATTGGGGGGTTCC__CCAAGGGGGGCC
19._GC-08-164-4-07
AATTGGGGGGTTCC__CCAAGGGGGGCC
20._GC-01-116-6-13
AATTGGGGGGTTCC__CCAAGGGGGGCC
21._GC-01-116-6-13
AATTGGGGGGTTCC__CCAAGGGGGGCC
22._GC-01-116-6-13
AATTGGGGGGTTCC__CCAAGGGGGGCC
23._GC-08-164-4-07
AATTGGGGGGTTCC__CCAAGGGGGGCC
24._GC-08-164-4-07
AATTGGGGGGTTCC__CCAAGGGGGGCC
25._GC-08-164-4-07
AATTGGGGGGTTCC__CCAAGGGGGGCC
26._GC-01-116-6-13
AATTGGGGGGTTCC__CCAAGGGGGGCC
27._RUQ_190
AA__________CC____AA__GG__CC
 5758596061626364656667686970
_Input profile
ACGGGGGGGGAACCAAAACCAAAAAACC
1._GC-01-116-6-13
ACGGGGGGGGAACCAAAACCAAAAAACC
2._RUQ_190
AC__CC______GGAA________AACC
3._RUQ_190
AC__CC____________GG________
4._GU_133_/C
AC____CC____GG______________
5._GU_133_/C
AC____CC____GG______________
6._RUQ_190
AC____CC____GG______________
7._GU_133_/C
AC____CC____GG______________
8._GU_133_/C
AC____CC____GG______________
9._GU_133_/C
AC____CC____GG______________
10._GU_133_/C
AC____CC____GG______________
11._GU_133_/C
AC____CC____GG______________
12._GU_133_/C
AC____CC____GG______________
13._GU_133_/C
AC____CC____GG______________
14._GC-01-116-6-13
ACCCCCCCAAAAGGAATT__TTTTAAGG
15._GC-08-164-4-07
ACCCCCCCAAAAGGAATTGGTTTTAAGG
16._GU_133_/C
AC____CC____GG______________
17._GU_133_/C
AC____CC____GG______________
18._GC-08-164-4-07
ACCCCCCCAAAAGGAATTGGTTTTAAGG
19._GC-08-164-4-07
ACCCCCCCAAAAGGAATTGGTTTTAAGG
20._GC-01-116-6-13
ACCCCCCCAAAAGGAATTGGTTTTAAGG
21._GC-01-116-6-13
ACCCCCCCAAAAGGAATTGGTTTTAAGG
22._GC-01-116-6-13
ACCCCCCCAAAAGGAATTGGTTTTAAGG
23._GC-08-164-4-07
ACCCCCCCAAAAGGAATTGGTTTTAAGG
24._GC-08-164-4-07
ACCCCCCCAAAAGGAATTGGTTTTAAGG
25._GC-08-164-4-07
ACCCCCCCAAAAGGAATTGGTTTTAAGG
26._GC-01-116-6-13
ACCCCCCCAAAAGGAATTGGTTTTAAGG
27._RUQ_190
AC__CCCC____GGAATT____TTAA__
 717273747576777879808182  
_Input profile
GGCCGGGGGGCCGGGGGGAAGGGGX_XX_X
1._GC-01-116-6-13
GGCCGGGGGGCCGGGGGGAAGGGGX_XX_X
2._RUQ_190
__GG____GG____________GGX_XX_X
3._RUQ_190
GGCCCC______________CC__X_XX_X
4._GU_133_/C
__GG________CCGG__AACCGGX_XX_X
5._GU_133_/C
__GGCC______CCGG__AACCGGX_XX_X
6._RUQ_190
__GGCC______CCGG__AACCGGX_XX_X
7._GU_133_/C
__GGCC______CCGG__AACCGGX_XX_X
8._GU_133_/C
__GGCC______CCGG__AACCGGX_XX_X
9._GU_133_/C
__GGCC______CCGG__AACCGGX_XX_X
10._GU_133_/C
__GGCC______CCGG__AACCGGX_XX_X
11._GU_133_/C
__GGCC______CCGG__AACCGGX_XX_X
12._GU_133_/C
__GGCC______CCGG__AACCGGX_XX_X
13._GU_133_/C
__GGCC______CCGG__AACCGGX_XX_X
14._GC-01-116-6-13
AAGG__CCGGCCCCGGCCAACCGGX_XX_X
15._GC-08-164-4-07
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
16._GU_133_/C
__GGCC______CCGG__AACCGGX_XX_X
17._GU_133_/C
__GGCC______CCGG__AACCGGX_XX_X
18._GC-08-164-4-07
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
19._GC-08-164-4-07
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
20._GC-01-116-6-13
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
21._GC-01-116-6-13
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
22._GC-01-116-6-13
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
23._GC-08-164-4-07
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
24._GC-08-164-4-07
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
25._GC-08-164-4-07
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
26._GC-01-116-6-13
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
27._RUQ_190
__GGCC____CC__________GGX_XX_X

Input profile: GU_133_/C MITC-000670

 
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USDA-SHRS, United States of America
 Mars, 2018

1._GU_133_/C GC-01-116-6-13

identical
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 13, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

2._GU_133_/C RUQ_190

76.5 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

3._GU_133_/C RUQ_190

59.1 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

4._GU_133_/C

53.3 %
30 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 10 > F
 Dapeng Zhang, 2016

5._GU_133_/C

51.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 10
 Dapeng Zhang, 2016

6._GU_133_/C RUQ_190

51.4 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

7._GU_133_/C

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

8._GU_133_/C

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 3 > FP
 Dapeng Zhang, 2016

9._GU_133_/C

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 9 > FP
 Dapeng Zhang, 2016

10._GU_133_/C

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 1
 Dapeng Zhang, 2016

11._GU_133_/C

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 2
 Dapeng Zhang, 2016

12._GU_133_/C

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 8
 Dapeng Zhang, 2016

13._GU_133_/C

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 11
 Dapeng Zhang, 2016

14._GU_133_/C GC-01-116-6-13

50 %
72 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP3
 Mars, 2018

15._GU_133_/C GC-08-164-4-07

48.7 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

16._GU_133_/C

48.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 1 > FP
 Dapeng Zhang, 2016

17._GU_133_/C

48.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 3
 Dapeng Zhang, 2016

18._GU_133_/C GC-08-164-4-07

48.1 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

19._GU_133_/C GC-08-164-4-07

48.1 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

20._GU_133_/C GC-01-116-6-13

48.1 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

21._GU_133_/C GC-01-116-6-13

48.1 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

22._GU_133_/C GC-01-116-6-13

48.1 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

23._GU_133_/C GC-08-164-4-07

48.1 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

24._GU_133_/C GC-08-164-4-07

48.1 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

25._GU_133_/C GC-08-164-4-07

47.4 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

26._GU_133_/C GC-01-116-6-13

47.4 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

27._GU_133_/C RUQ_190

47.2 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998