SNP Profiles of "GU 133 /C"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-01-116-6-13
GGGGATGGCCTTCCTTAATTTTAAGGAA
2. _GC-01-116-6-13
GGGGATGGCCTTCCTTAATTTTAAGGAA
3. _GC-01-116-6-13
GGGGATGGCCTTCCTTAATTTTAAGGAA
4. _GC-01-116-6-13
GGGGATGGCCTTCCTTAATTTTAAGGAA
5. _GC-01-116-6-13
GG___ATGGCCTTCCTTAATTTTAAGGAA
6. _GC-08-164-4-07
GGGGATGGCCTTCCTTAATTTTAAGGAA
7. _GC-08-164-4-07
GGGGATGGCCTTCCTTAATTTTAAGGAA
8. _GC-08-164-4-07
GGGGATGGCCTTCCTTAATTTTAAGG___
9. _GC-08-164-4-07
GGGGATGGCCTTCCTTAATTTTAAGGAA
10. _GC-08-164-4-07
GGGGATGGCCTTCCTTAATTTTAAGGAA
11. _GC-08-164-4-07
GGGGATGGCCTTCCTTAATTTTAAGGAA
12. _GC-01-116-6-13
GG___ATGGGGAACCAAAAAAAATTGGAA
13. _1613_2
GG___AT_______________AATTTT______AA
14. _1613_1_>_FP
GG___AT_______________AATTTT______AA
15. _1613_10_>_F
GG___AT_______________AATTTT______AA
16. _1613_3_>_FP
GG___AT_______________AATTTT______AA
17. _1613_9_>_FP
GG___AT_______________AATTTT______AA
18. _8407_1
GG___AT_______________AATTTT______AA
19. _8407_2
GG___AT_______________AATTTT______AA
20. _8407_3
GG___AT_______________AATTTT_________
21. _8407_8
GG___AT_______________AATTTT______AA
22. _8407_10
GG___AT_______________AATTTT______AA
23. _8407_11
GG___AT_______________AATTTT______AA
24. _RUQ_190
________________________AA___TT___GGAA
25. _RUQ_190
_______________TTCC___AATTTT___GGAA
26. _RUQ_190
GG___AT_______________AAGTTT______AA
27. _MITC-000670
GGCCATGGGGAACCAAAAAAAATTGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-01-116-6-13
CC___GGCCAAGGGGAATTGGGGTTCCGG
2. _GC-01-116-6-13
CCGGGGCCAAGGGGAATTGGGGTTCCGG
3. _GC-01-116-6-13
CCGGGGCCAAGGGGAATTGGGGTTCCGG
4. _GC-01-116-6-13
CCGGGGCCAAGGGGAATTGGGGTTCCGG
5. _GC-01-116-6-13
CC___GGCCAAGGGGAA___GGGGTTCCGG
6. _GC-08-164-4-07
CCGGGGCCAAGGGGAATTGGGGTTCCGG
7. _GC-08-164-4-07
CCGGGGCCAAGGGGAATTGGGGTTCCGG
8. _GC-08-164-4-07
CCGGGGCCAAGGGGAATTGGGGTTCCGG
9. _GC-08-164-4-07
CCGGGGCCAAGGGGAATTGGGGTTCCGG
10. _GC-08-164-4-07
CCGGGGCCAAGGGGAATTGGGGTTCCGG
11. _GC-08-164-4-07
CCGGGGCCAAGGGGAATTGGGGTTCCGG
12. _GC-01-116-6-13
GGGGGGGGTTGGGGAAAAGGGGTTGG___
13. _1613_2
CCGG___CC_________AA______GG______GG
14. _1613_1_>_FP
CC______CC_________AA______GG______GG
15. _1613_10_>_F
CC______CC_________AA______GG______GG
16. _1613_3_>_FP
CCGG___CC_________AA______GG______GG
17. _1613_9_>_FP
CCGG___CC_________AA______GG______GG
18. _8407_1
CCGG___CC_________AA______GG______GG
19. _8407_2
CCGG___CC_________AA______GG______GG
20. _8407_3
CCGG___CC_________AA______GG______GG
21. _8407_8
CCGG___CC_________AA______GG______GG
22. _8407_10
CCGG___CC_________AA______GG______GG
23. _8407_11
CCGG___CC_________AA______GG______GG
24. _RUQ_190
GGGG____________GGAATT_________CC___
25. _RUQ_190
CCGG___CC___GGGGAA____________CCGG
26. _RUQ_190
CCGG___CC_________AA______GG______GG
27. _MITC-000670
GGGGGGGGTTGGGGAAAAGGGGTTGG___
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-01-116-6-13
___CCAACCGGGGGGCCACCCAACCGGAA
2. _GC-01-116-6-13
___CCAACCGGGGGGCCACCCAACCGGAA
3. _GC-01-116-6-13
___CCAACCGGGGGGCCACCCAACCGGAA
4. _GC-01-116-6-13
___CCAACCGGGGGGCCACCCAACCGGAA
5. _GC-01-116-6-13
___CCAACCGGGGGGCCACCCAACCGGAA
6. _GC-08-164-4-07
___CCAACCGGGGGGCCACCCAACCGGAA
7. _GC-08-164-4-07
___CCAACCGGGGGGCCACCCAACCGGAA
8. _GC-08-164-4-07
___CCAACCGGGGGGCCACCCAACCGGAA
9. _GC-08-164-4-07
___CCAA___GGGGGGCCACCCAACCGGAA
10. _GC-08-164-4-07
___CCAACCGGGGGGCCACCCAACCGGAA
11. _GC-08-164-4-07
___CCAACCGGGGGGCCACCCAACCGGAA
12. _GC-01-116-6-13
AACCAA___GGCCGGCCACGG___GG___GG
13. _1613_2
______AACC___GG___CCAC______CCGG___
14. _1613_1_>_FP
______AACC___GG___CCAC______CCGG___
15. _1613_10_>_F
______AACC___GG___CCAC______CCGG___
16. _1613_3_>_FP
______AACC___GG___CCAC______CCGG___
17. _1613_9_>_FP
______AACC___GG___CCAC______CCGG___
18. _8407_1
______AACC___GG___CCAC______CCGG___
19. _8407_2
______AACC___GG___CCAC______CCGG___
20. _8407_3
______AACC___GG___CCAC______CCGG___
21. _8407_8
______AA______GG___CCAC______CCGG___
22. _8407_10
______AACC___GG___CCAC______CCGG___
23. _8407_11
______AACC___GG___CCAC______CCGG___
24. _RUQ_190
_____________________CCACCCAA_________
25. _RUQ_190
______AACC___GG___CCACCC___CC______
26. _RUQ_190
______AACC___GG___CCAC______CCAA___
27. _MITC-000670
AACCAA___GGCCGGCCACGG___GG___GG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-01-116-6-13
AACCCCGGAAGGTTTTAAGG___GGCCCC
2. _GC-01-116-6-13
AACCCCGGAAGGTTTTAAGG___GGCCCC
3. _GC-01-116-6-13
AACCCCGGAAGGTTTTAAGG___GGCCCC
4. _GC-01-116-6-13
AACCCCGGAAGGTTTTAAGG___GGCCCC
5. _GC-01-116-6-13
AACCCCGGAA___TTTTAAGGAAGGCC___
6. _GC-08-164-4-07
AACC___GGAAGGTTTTAAGG___GGCCCC
7. _GC-08-164-4-07
AACCCCGGAAGGTTTTAAGG___GGCCCC
8. _GC-08-164-4-07
AACCCCGGAAGGTTTTAAGG___GGCCCC
9. _GC-08-164-4-07
AACCCCGGAAGGTTTTAAGG___GGCCCC
10. _GC-08-164-4-07
AACCCCGGAAGGTTTTAAGG___GGCCCC
11. _GC-08-164-4-07
AACCCCGGAAGGTTTTAAGG___GGCCCC
12. _GC-01-116-6-13
AA______CCAACCAAAAAACCGGCC___GG
13. _1613_2
_________GG_____________________GG___CC
14. _1613_1_>_FP
_________GG_____________________GG___CC
15. _1613_10_>_F
_________GG_____________________GG______
16. _1613_3_>_FP
_________GG_____________________GG___CC
17. _1613_9_>_FP
_________GG_____________________GG___CC
18. _8407_1
_________GG_____________________GG___CC
19. _8407_2
_________GG_____________________GG___CC
20. _8407_3
_________GG_____________________GG___CC
21. _8407_8
_________GG_____________________GG___CC
22. _8407_10
_________GG_____________________GG___CC
23. _8407_11
_________GG_____________________GG___CC
24. _RUQ_190
_______________GG____________GGCCGGCC
25. _RUQ_190
______CCGGAA______TTAA______GGCCCC
26. _RUQ_190
_________GG_____________________GG___CC
27. _MITC-000670
AA______CCAACCAAAAAACCGGCC___GG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-01-116-6-13
CCGGCCGGCCAACCGGCCTTCCCCGGGG
2. _GC-01-116-6-13
CCGGCCGGCCAACCGGCCTTCCCCGGGG
3. _GC-01-116-6-13
CCGGCCGGCCAACCGGCCTTCCCCGGGG
4. _GC-01-116-6-13
CCGGCCGGCCAACCGGCCTTCCCCGGGG
5. _GC-01-116-6-13
CCGGCCGGCCAACCGGCCTTCCCCGGGG
6. _GC-08-164-4-07
CCGGCCGGCCAACCGGCCTTCCCCGGGG
7. _GC-08-164-4-07
CCGGCCGGCCAACCGGCCTTCCCCGGGG
8. _GC-08-164-4-07
CCGGCCGGCCAACCGGCCTTCCCCGGGG
9. _GC-08-164-4-07
CCGGCCGGCCAACCGGCCTTCCCCGGGG
10. _GC-08-164-4-07
CCGGCCGGCCAACCGGCCTTCCCCGGGG
11. _GC-08-164-4-07
CCGGCCGGCCAACCGGCCTTCCCCGGGG
12. _GC-01-116-6-13
GGGGGGGGGGAAGGGG___AA___GGGGCC
13. _1613_2
______CCGG___AACCGG_________CCGG___
14. _1613_1_>_FP
______CCGG___AACCGG_________CCGG___
15. _1613_10_>_F
______CCGG___AACCGG_________CCGG___
16. _1613_3_>_FP
______CCGG___AACCGG_________CCGG___
17. _1613_9_>_FP
______CCGG___AACCGG_________CCGG___
18. _8407_1
______CCGG___AACCGG_________CCGG___
19. _8407_2
______CCGG___AACCGG_________CCGG___
20. _8407_3
______CCGG___AACCGG_________CCGG___
21. _8407_8
______CCGG___AACCGG_________CCGG___
22. _8407_10
______CCGG___AACCGG_________CCGG___
23. _8407_11
______CCGG___AACCGG_________CCGG___
24. _RUQ_190
__________________CC_________CCCC______
25. _RUQ_190
___-_______________GGCC______CC___GG
26. _RUQ_190
______CCGG___AACCGG_________CCGG___
27. _MITC-000670
GGGGGGGGGGAAGGGG___AA___GGGGCC
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-01-116-6-13
AACCGGTTCCTTCCCCTTCCTTTTTT___
2. _GC-01-116-6-13
AACCGGTTCCTTCCCCTTCCTTTTTT___
3. _GC-01-116-6-13
AACCGGTTCCTTCCCCTTCCTTTTTT___
4. _GC-01-116-6-13
AACCGGTTCCTTCCCCTTCCTTTTTT___
5. _GC-01-116-6-13
AACCGGTTCCTTCCCCTTCC___TTTT___
6. _GC-08-164-4-07
AACCGGTTCCTTCCCCTTCCTTTTTT___
7. _GC-08-164-4-07
AACCGGTTCCTTCCCCTTCCTTTTTT___
8. _GC-08-164-4-07
AACCGGTTCCTTCCCCTTCCTTTTTT___
9. _GC-08-164-4-07
AACCGGTTCCTTCCCCTTCCTTTTTT___
10. _GC-08-164-4-07
AACCGGTTCCTTCCCCTTCC___TTTT___
11. _GC-08-164-4-07
AACCGGTTCCTTCCCCTTCCTTTTTT___
12. _GC-01-116-6-13
AAGGGG______AAGG___AA___AAAAAA___
13. _1613_2
AA_________CC______CC______TTTT______
14. _1613_1_>_FP
AA_________CC______CC______TTTT______
15. _1613_10_>_F
AA_________CC______CC_________TT______
16. _1613_3_>_FP
AA_________CC______CC______TTTT______
17. _1613_9_>_FP
AA_________CC______CC______TTTT______
18. _8407_1
AA_________CC______CC______TTTT______
19. _8407_2
AA_________CC______CC______TTTT______
20. _8407_3
AA_________CC______CC______TTTT______
21. _8407_8
AA_________CC______CC______TTTT______
22. _8407_10
AA_________CC______CC_________TT______
23. _8407_11
AA_________CC______CC______TTTT______
24. _RUQ_190
______GGTT______________________________
25. _RUQ_190
______GGTT__________________TT___TT___
26. _RUQ_190
AA_________CC______CC______TTTT___CC
27. _MITC-000670
AAGGGG______AAGG___AA___AAAAAACC
 85 86 87 88 89 90 91 92 93 94 95 96   
1. _GC-01-116-6-13
GGTTCCCCCGGGCCCCGGACGGCCX_XX_X
2. _GC-01-116-6-13
GGTTCCCCCGGGCCCCGGACGGCCX_XX_X
3. _GC-01-116-6-13
GGTTCCCCCGGGCCCCGGACGGCCX_XX_X
4. _GC-01-116-6-13
GGTTCCCCCGGGCCCCGGACGGCCX_XX_X
5. _GC-01-116-6-13
______CCCCCGGGCCCCGGACGGCCX_XX_X
6. _GC-08-164-4-07
GGTTCCCCCGGGCCCCGGACGGCCX_XX_X
7. _GC-08-164-4-07
GGTTCCCCCGGGCCCCGGACGGCCX_XX_X
8. _GC-08-164-4-07
GGTTCCCCCGGGCCCCGGACGGCCX_XX_X
9. _GC-08-164-4-07
GGTTCCCCCGGGCCCCGGACGGCCX_XX_X
10. _GC-08-164-4-07
GGTTCCCCCGGGCCCCGGACGGCCX_XX_X
11. _GC-08-164-4-07
GGTTCCCCCGGGCCCCGGACGGCCX_XX_X
12. _GC-01-116-6-13
GGAAGGGGCGGGGGCC___ACGGCCX_XX_X
13. _1613_2
___TT___CCCGGGCC_______________X_XX_X
14. _1613_1_>_FP
___TT___CCCGGGCC_______________X_XX_X
15. _1613_10_>_F
_________CCCGGGCC_______________X_XX_X
16. _1613_3_>_FP
___TT___CCCGGGCC_______________X_XX_X
17. _1613_9_>_FP
___TT___CCCGGGCC_______________X_XX_X
18. _8407_1
___TT___CCCGGGCC_______________X_XX_X
19. _8407_2
___TT___CCCGGGCC_______________X_XX_X
20. _8407_3
___TT___CCCGGGCC_______________X_XX_X
21. _8407_8
___TT___CCCGGGCC_______________X_XX_X
22. _8407_10
___TT___CCCGGGCC_______________X_XX_X
23. _8407_11
___TT___CCCGGGCC_______________X_XX_X
24. _RUQ_190
______CC___CG_____________________X_XX_X
25. _RUQ_190
______CCCCCGGG__________________X_XX_X
26. _RUQ_190
___TT___CCCGGGCC_______________X_XX_X
27. _MITC-000670
GGAAGGGGCGGGGGCC___ACGGCCX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._GU_133_/C GC-01-116-6-13
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018
2._GU_133_/C GC-01-116-6-13
Location: Tree: 2
Notes: 2
 Mars, 2018
3._GU_133_/C GC-01-116-6-13
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018
4._GU_133_/C GC-01-116-6-13
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018
5._GU_133_/C GC-01-116-6-13
Location: Tree: 10
Notes: 10 > FP3
 Mars, 2018
6._GU_133_/C GC-08-164-4-07
Location: Tree: 1
Notes: 1
 Mars, 2018
7._GU_133_/C GC-08-164-4-07
Location: Tree: 2
Notes: 2
 Mars, 2018
8._GU_133_/C GC-08-164-4-07
Location: Tree: 3
Notes: 3
 Mars, 2018
9._GU_133_/C GC-08-164-4-07
Location: Tree: 8
Notes: 8
 Mars, 2018
10._GU_133_/C GC-08-164-4-07
Location: Tree: 10
Notes: 10
 Mars, 2018
11._GU_133_/C GC-08-164-4-07
Location: Tree: 11
Notes: 11
 Mars, 2018
12._GU_133_/C GC-01-116-6-13
Location: Field: 1, Block: 6, Rep: 13, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018
13._GU_133_/C
Location: 1613 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
14._GU_133_/C
Location: 1613 1 > FP
 Dapeng Zhang, 2016
15._GU_133_/C
Location: 1613 10 > F
 Dapeng Zhang, 2016
16._GU_133_/C
Location: 1613 3 > FP
 Dapeng Zhang, 2016
17._GU_133_/C
Location: 1613 9 > FP
 Dapeng Zhang, 2016
18._GU_133_/C
Location: 8407 1
 Dapeng Zhang, 2016
19._GU_133_/C
Location: 8407 2
 Dapeng Zhang, 2016
20._GU_133_/C
Location: 8407 3
 Dapeng Zhang, 2016
21._GU_133_/C
Location: 8407 8
 Dapeng Zhang, 2016
22._GU_133_/C
Location: 8407 10
 Dapeng Zhang, 2016
23._GU_133_/C
Location: 8407 11
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

24._GU_133_/C RUQ 190
 Jocelyn De Wever et al., 2019
25._GU_133_/C RUQ 190
 Dapeng Zhang, 2014
26._GU_133_/C RUQ 190
 Dapeng Zhang, 2016

USDA-SHRS United States of America

27._GU_133_/C MITC-000670
 Mars, 2018

  Key to SNP Markers

1TcSNP25 2TcSNP28 3TcSNP32 4TcSNP42 5TcSNP60
6TcSNP75 7TcSNP90 8TcSNP122 9TcSNP144 10TcSNP150
11TcSNP151 12TcSNP154 13TcSNP174 14TcSNP193 15TcSNP226
16TcSNP230 17TcSNP240 18TcSNP242 19TcSNP316 20TcSNP329
21TcSNP364 22TcSNP372 23TcSNP413 24TcSNP418 25TcSNP429
26TcSNP430 27TcSNP448 28TcSNP469 29TcSNP497 30TcSNP521
31TcSNP529 32TcSNP534 33TcSNP547 34TcSNP560 35TcSNP561
36TcSNP577 37TcSNP591 38TcSNP602 39TcSNP606 40TcSNP619
41TcSNP645 42TcSNP653 43TcSNP689 44TcSNP701 45TcSNP702
46TcSNP723 47TcSNP731 48TcSNP751 49TcSNP776 50TcSNP799
51TcSNP823 52TcSNP836 53TcSNP860 54TcSNP872 55TcSNP878
56TcSNP891 57TcSNP894 58TcSNP899 59TcSNP917 60TcSNP929
61TcSNP944 62TcSNP953 63TcSNP994 64TcSNP998 65TcSNP999
66TcSNP1034 67TcSNP1041 68TcSNP1060 69TcSNP1062 70TcSNP1063
71TcSNP1075 72TcSNP1096 73TcSNP1111 74TcSNP1126 75TcSNP1144
76TcSNP1149 77TcSNP1156 78TcSNP1165 79TcSNP1175 80TcSNP1242
81TcSNP1253 82TcSNP1270 83TcSNP1309 84TcSNP1350 85TcSNP1383
86TcSNP1414 87TcSNP1439 88TcSNP1442 89TcSNP1458 90TcSNP1484
91TcSNP1520 92Tcm001s00947643 93Tcm002s20575712 94Tcm003s01336581 95Tcm003s07402719
96Tcm006s26664133