SNP Profiles of ICS 1 View Data

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AA	GG	CC	CT	AG	CC	AA	TT	CT	AA	CC	AG	GG
1._ICS_1	__	__	__	CC	__	GG	__	__	__	__	AG	__	__	GG
2._RUQ_847	CT	AC	GT	TT	TT	AA	CT	AT	CT	CT	AG	CG	AA	CG
3._RUQ_847B	CT	AC	GT	TT	TT	AA	CT	AT	CT	CT	AG	CG	AA	CG
4._ICS1	__	__	__	__	__	__	__	__	__	__	__	__	__	CG
5._RUQ_847	__	__	__	__	__	__	__	__	__	__	__	__	__	CG
6._RUQ_847	__	__	__	__	__	__	__	__	__	__	AG	__	__	CG
7._RUQ_847	__	__	__	CT	__	AA	__	__	__	__	AG	__	__	CG
8._NA	__	__	__	TT	__	AA	__	__	__	CT	AG	__	AA	CG
9._NA	__	__	__	TT	__	AA	__	__	__	CT	AG	__	AA	CG
10._NA	__	__	__	TT	__	AA	__	__	__	CT	AG	__	AA	CG
11._NA	__	__	__	TT	__	AA	__	__	__	CT	AG	__	AA	CG
12._NA	__	__	__	TT	__	AA	__	__	__	CT	AG	__	AA	CG
13._NA	__	__	__	TT	__	AA	__	__	__	CT	AG	__	AA	CG
14._ICS_1	__	__	__	TT	__	AA	__	__	__	__	AG	__	__	CG
15._ICS_1	__	__	__	TT	__	AA	__	__	__	__	AG	__	__	CG
16._ICS_1	__	__	__	TT	__	AA	__	__	__	__	AG	__	__	CG
17._ICS_1	__	__	__	TT	__	AA	__	__	__	__	AG	__	__	CG
18._ICS_1	__	__	__	TT	__	AA	__	__	__	__	AG	__	__	CG
19._RUQ_847	__	__	__	TT	__	AA	__	__	__	__	AG	__	__	CG
20._ICS_1	__	__	__	TT	__	AA	__	__	__	__	AG	__	__	CG
21._ICS_1	__	__	__	TT	__	AA	__	__	__	__	AG	__	__	__
22._RUQ_847	__	__	__	__	__	AA	__	__	__	__	AG	__	AA	CG
23._MITC-000297	__	__	__	__	__	AA	__	__	__	__	AG	__	AA	CG
24._ICS_1_Fld#_73_Plt#_2	__	__	__	__	__	AA	__	__	__	__	AG	__	AA	CG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	AA	TT	CT	AG	GG	CT	GG	AA	CC	AG	CC	TT
1._ICS_1	__	__	__	__	__	__	GG	__	__	AA	__	__	__	__
2._RUQ_847	TT	AA	AC	CT	CT	GG	GT	CT	CG	GG	GG	AA	CT	CT
3._RUQ_847B	TT	AA	AC	CT	CT	GG	GT	CT	CG	GG	GG	AA	CT	CT
4._ICS1	__	__	__	__	__	__	__	__	__	__	__	__	__	CC
5._RUQ_847	__	__	__	__	__	__	__	__	__	__	__	__	__	CT
6._RUQ_847	__	__	AC	__	__	GG	GT	CT	__	__	__	__	__	CT
7._RUQ_847	__	__	__	__	__	__	GT	__	__	GG	__	__	__	__
8._NA	GG	__	AC	__	__	GG	GT	CC	__	GG	__	__	__	CT
9._NA	GG	__	AC	__	__	GG	GT	CC	__	GG	__	__	__	CT
10._NA	GG	__	AC	__	__	GG	GT	CC	__	GG	__	__	__	CT
11._NA	GG	__	AC	__	__	GG	GT	CC	__	GG	__	__	__	CT
12._NA	GG	__	AC	__	__	GG	GT	CC	__	GG	__	__	__	CT
13._NA	GG	__	AC	__	__	GG	GT	CC	__	GG	__	__	__	CT
14._ICS_1	__	__	__	__	__	__	GT	__	__	GG	__	__	__	__
15._ICS_1	__	__	__	__	__	__	GT	__	__	GG	__	__	__	__
16._ICS_1	__	__	__	__	__	__	GT	__	__	GG	__	__	__	__
17._ICS_1	__	__	__	__	__	__	GT	__	__	GG	__	__	__	__
18._ICS_1	__	__	__	__	__	__	GT	__	__	GG	__	__	__	__
19._RUQ_847	__	__	__	__	__	__	GT	__	__	GG	__	__	__	__
20._ICS_1	__	__	__	__	__	__	GT	__	__	GG	__	__	__	__
21._ICS_1	__	__	__	__	__	__	GT	__	__	GG	__	__	__	__
22._RUQ_847	CC	__	AC	__	__	GG	AC	__	__	__	__	__	__	AG
23._MITC-000297	CC	__	AC	__	__	GG	AC	__	__	__	__	__	__	AG
24._ICS_1_Fld#_73_Plt#_2	CC	__	AC	__	__	GG	AC	__	__	__	__	__	__	AG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AC	AA	CG	AG	AA	CC	AC	CT	AA	GG	AA	CT	GG	GG
1._ICS_1	CC	__	CG	__	AA	__	__	__	__	__	__	__	AA	__
2._RUQ_847	AC	AA	CC	AA	AC	CT	AC	CT	CC	AG	AC	TT	AG	GT
3._RUQ_847B	AC	AA	CC	AA	AC	CT	AC	CT	CC	AG	AC	TT	AG	GT
4._ICS1	CC	__	CC	__	__	__	__	__	__	__	__	__	AG	__
5._RUQ_847	AC	__	CC	__	__	__	__	__	__	__	__	__	AG	__
6._RUQ_847	AA	__	CC	__	CC	__	__	__	__	AG	__	__	AG	__
7._RUQ_847	AC	__	CC	__	CC	__	__	__	__	__	__	__	AG	__
8._NA	AC	__	CC	__	CC	__	__	__	__	AG	__	__	AG	__
9._NA	AC	__	CC	__	CC	__	__	__	__	AG	__	__	AG	__
10._NA	AC	__	CC	__	CC	__	__	__	__	AG	__	__	AG	__
11._NA	AC	__	CC	__	CC	__	__	__	__	AG	__	__	AG	__
12._NA	AC	__	CC	__	CC	__	__	__	__	AG	__	__	AG	__
13._NA	AC	__	__	__	CC	__	__	__	__	AG	__	__	AG	__
14._ICS_1	AC	__	CC	__	CC	__	__	__	__	__	__	__	AG	__
15._ICS_1	AC	__	CC	__	CC	__	__	__	__	__	__	__	AG	__
16._ICS_1	AC	__	CC	__	CC	__	__	__	__	__	__	__	AG	__
17._ICS_1	AC	__	CC	__	CC	__	__	__	__	__	__	__	AG	__
18._ICS_1	AC	__	CC	__	CC	__	__	__	__	__	__	__	AG	__
19._RUQ_847	AC	__	CC	__	CC	__	__	__	__	__	__	__	AG	__
20._ICS_1	AC	__	__	__	CC	__	__	__	__	__	__	__	AG	__
21._ICS_1	AC	__	CC	__	CC	__	__	__	__	__	__	__	AG	__
22._RUQ_847	AC	__	CC	__	CC	__	__	__	__	AG	__	__	AG	__
23._MITC-000297	AC	__	CC	__	CC	__	__	__	__	AG	__	__	AG	__
24._ICS_1_Fld#_73_Plt#_2	AC	__	CC	__	CC	__	__	__	__	AG	__	__	AG	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	GG	CC	CC	AA	GG	GG	CC	CT	CC	TT	TT	CT	CG	GG
1._ICS_1	__	__	AC	__	__	__	__	__	__	__	__	__	GG	__
2._RUQ_847	AG	CT	AA	AT	GT	GG	AC	CT	CC	TT	AT	TT	GG	GG
3._RUQ_847B	AG	CT	AA	AT	GT	GG	AC	CT	CC	TT	AT	TT	GG	GG
4._ICS1	__	__	CC	__	__	__	__	__	__	__	__	__	CG	__
5._RUQ_847	__	__	AA	__	__	__	__	__	__	__	__	__	CC	__
6._RUQ_847	__	__	AA	__	__	__	__	__	__	__	__	__	GG	__
7._RUQ_847	__	__	AA	__	__	__	__	__	__	__	__	__	GG	__
8._NA	__	__	AA	__	__	__	__	__	__	__	__	__	GG	__
9._NA	__	__	AA	__	__	__	__	__	__	__	__	__	GG	__
10._NA	__	__	AA	__	__	__	__	__	__	__	__	__	GG	__
11._NA	__	__	AA	__	__	__	__	__	__	__	__	__	GG	__
12._NA	__	__	AA	__	__	__	__	__	__	__	__	__	GG	__
13._NA	__	__	AA	__	__	__	__	__	__	__	__	__	GG	__
14._ICS_1	__	__	AA	__	__	__	__	__	__	__	__	__	GG	__
15._ICS_1	__	__	AA	__	__	__	__	__	__	__	__	__	GG	__
16._ICS_1	__	__	AA	__	__	__	__	__	__	__	__	__	GG	__
17._ICS_1	__	__	AA	__	__	__	__	__	__	__	__	__	GG	__
18._ICS_1	__	__	AA	__	__	__	__	__	__	__	__	__	GG	__
19._RUQ_847	__	__	AA	__	__	__	__	__	__	__	__	__	GG	__
20._ICS_1	__	__	AA	__	__	__	__	__	__	__	__	__	GG	__
21._ICS_1	__	__	AA	__	__	__	__	__	__	__	__	__	GG	__
22._RUQ_847	__	__	AA	__	__	__	__	__	__	__	__	__	CC	__
23._MITC-000297	__	__	AA	__	__	__	__	__	__	__	__	__	CC	__
24._ICS_1_Fld#_73_Plt#_2	__	__	AA	__	__	__	__	__	__	__	__	__	CC	__

	57	58	59	60
_Input profile	GG	TT	GG	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._ICS_1	__	__	__	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._RUQ_847	GG	TT	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._RUQ_847B	GG	TT	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._ICS1	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._RUQ_847	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._RUQ_847	__	__	__	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._RUQ_847	__	__	__	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._NA	__	__	__	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._NA	__	__	__	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._NA	__	__	__	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._NA	__	__	__	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._NA	__	__	__	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._NA	__	__	__	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._ICS_1	__	__	__	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._ICS_1	__	__	__	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._ICS_1	__	__	__	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._ICS_1	__	__	__	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
18._ICS_1	__	__	__	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
19._RUQ_847	__	__	__	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
20._ICS_1	__	__	__	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
21._ICS_1	__	__	__	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
22._RUQ_847	__	__	__	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
23._MITC-000297	__	__	__	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
24._ICS_1_Fld#_73_Plt#_2	__	__	__	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: PA_175_[PER] RUQ_37

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

1._ICS_1

73.1 %
13 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

2._ICS_1 RUQ_847

59.2 %
60 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.578 Cri
0.416

3._ICS_1 RUQ_847B

59.2 %
60 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

4._ICS_1 ICS1

57.1 %
7 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam

Location: CEFORTT

Jocelyn De Wever et al., 2019

5._ICS_1 RUQ_847

50 %
7 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: GBR207

Jocelyn De Wever et al., 2019

6._ICS_1 RUQ_847

50 %
15 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

7._ICS_1 RUQ_847

46.2 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

8._ICS_1 NA

45.2 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

9._ICS_1 NA

45.2 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

10._ICS_1 NA

45.2 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

11._ICS_1 NA

45.2 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

12._ICS_1 NA

45.2 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

13._ICS_1 NA

45 %
20 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

14._ICS_1

42.3 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 5

Dapeng Zhang, 2016

15._ICS_1

42.3 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 1

Dapeng Zhang, 2016

16._ICS_1

42.3 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 3

Dapeng Zhang, 2016

17._ICS_1

42.3 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 6

Dapeng Zhang, 2016

18._ICS_1

42.3 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 8

Dapeng Zhang, 2016

19._ICS_1 RUQ_847

42.3 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

20._ICS_1

41.7 %
12 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 7

Dapeng Zhang, 2016

21._ICS_1

41.7 %
12 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block4

Dapeng Zhang, 2016

22._ICS_1 RUQ_847

35.3 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

23._ICS_1 MITC-000297

35.3 %
17 shared markers

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USDA-SHRS, United States of America

24._ICS_1 ICS_1_Fld#_73_Plt#_2

35.3 %
17 shared markers

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USDA-TARS, United States of America

Location: Field: 73, Tree: 2

Key to SNP Markers

Key to SNP Markers

1	TcSNP1237	2	TcSNP1230	3	TcSNP1205	4	TcSNP1144	5	TcSNP1112
6	TcSNP1062	7	TcSNP1053	8	TcSNP1019	9	TcSNP1010	10	TcSNP999
11	TcSNP998	12	TcSNP945	13	TcSNP899	14	TcSNP872	15	TcSNP836
16	TcSNP835	17	TcSNP823	18	TcSNP800	19	TcSNP739	20	TcSNP731
21	TcSNP723	22	TcSNP702	23	TcSNP660	24	TcSNP645	25	TcSNP644
26	TcSNP642	27	TcSNP640	28	TcSNP602	29	TcSNP591	30	TcSNP589
31	TcSNP577	32	TcSNP546	33	TcSNP529	34	TcSNP522	35	TcSNP519
36	TcSNP421	37	TcSNP363	38	TcSNP329	39	TcSNP305	40	TcSNP290
41	TcSNP230	42	TcSNP194	43	TcSNP189	44	TcSNP176	45	TcSNP144
46	TcSNP143	47	TcSNP131	48	TcSNP52	49	TcSNP49	50	TcSNP33
51	TcSNP19	52	TcSNP13	53	TcSNP1527	54	TcSNP1524	55	TcSNP1458
56	TcSNP1404	57	TcSNP1401	58	TcSNP1293	59	TcSNP1275	60	TcSNP1253