SNP Profiles of "ICS 1"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _NA
______GGGGAT___GG______CTCTAACC___
2. _NA
______GGGGAT___GG______CTCTAACC___
3. _NA
______GGGGAT___GG______CTCTAACC___
4. _NA
______GGGGAT___GG______CTCTAACC___
5. _NA
______GGGGAT___GG______CTCTAACC___
6. _NA
______GGGGAT___GG______CTCTAACC___
7. _8903_1
______GG___AT___________________________
8. _8903_3
______GG___AT___________________________
9. _8903_5
______GG___AT___________________________
10. _8903_6
______GG___AT___________________________
11. _8903_7
______GG___AT___________________________
12. _8903_8
______GG___AT___________________________
13. _ICS1
__________________________________________
14. _Cabiria
______GG___AT___________________________
15. _RUQ_847
__________________________________________
16. _RUQ_847
TTCC_________CT___ACGG____________GT
17. _RUQ_847B
TTCC_________CT___ACGG____________GT
18. _RUQ_847
______GGCCAT___GG______AGAGAAGG___
19. _RUQ_847
______________________________CTAA______
20. _RUQ_847
______GG___AT___________________________
21. _RUQ_847
______GG___AT___________________________
22. _San_Juan_Block4
______GG___AT___________________________
23. _MITC-000297
______GGCCAT___GG______AGAGAAGG___
24. _ICS_1_Fld#_73_Plt#_2
______GGCCAT___GG______AGAGAAGG___
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _NA
___AAGTCCAAAG______AA___CGAGGGCT
2. _NA
___AAGTCCAAAG______AA___CGAGGGCT
3. _NA
___AAGTCCAAAG______AA___CGAGGGCT
4. _NA
___AAGTCCAAAG______AA___CGAGGGCT
5. _NA
___AAGTCCAAAG______AA___CGAGGGCT
6. _NA
___AAGTCCAAAG______AA___CGAGGGCT
7. _8903_1
___AAGTCC____________AA___CGAG___CT
8. _8903_3
___AAGTCC____________AA___CGAG___CT
9. _8903_5
___AAGTCC____________AA___CGAG___CT
10. _8903_6
___AAGTCC____________AA___CGAG___CT
11. _8903_7
___AAGTCC____________AA___CGAG___CT
12. _8903_8
___AAGTCC____________AA___CGAG___CT
13. _ICS1
___CC___CT___AG______AC___CGAG______
14. _Cabiria
___ACGTCC____________AA___CCAA___CC
15. _RUQ_847
___AA___CC___AG______AA___CGAG______
16. _RUQ_847
ATAA____________CTAG___GT___AG______
17. _RUQ_847B
ATAA____________CTAG___GT___AG______
18. _RUQ_847
___AAACGGTTAG______AA___CGAGGGAG
19. _RUQ_847
___AAGTCC___AG______AA___CGAG___CT
20. _RUQ_847
___AAGTCC____________AA___CGAG___CT
21. _RUQ_847
___AAGTCC____________AA___CGAG___CT
22. _San_Juan_Block4
___AAGTCC____________AA___CGAG___CT
23. _MITC-000297
___AAACGGTTAG______AA___CGAGGGAG
24. _ICS_1_Fld#_73_Plt#_2
___AAACGGTTAG______AA___CGAGGGAG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _NA
______ATAG___AAATCTAG___GGAACGAG
2. _NA
______ATAG___AAATCTAG___GGAACGAG
3. _NA
______ATAG___AAATCTAG___GGAACGAG
4. _NA
______ATAG___AAATCTAG___GGAACGAG
5. _NA
______ATAG___AAATCTAG___GGAACGAG
6. _NA
______ATAG___AAATCTAG___GGAACGAG
7. _8903_1
__________________AT_________GG______AG
8. _8903_3
__________________AT_________GG______AG
9. _8903_5
__________________AT_________GG______AG
10. _8903_6
__________________AT_________GG______AG
11. _8903_7
__________________AT_________GG______AG
12. _8903_8
__________________AT_________GG______AG
13. _ICS1
_______________AGTTCT____________GG___
14. _Cabiria
__________________AA_________GG______AG
15. _RUQ_847
_______________AAATCT____________CG___
16. _RUQ_847
TTAC___AGCC____________CT____________
17. _RUQ_847B
TTAC___AGCC____________CT____________
18. _RUQ_847
______ATAG___AAATAGAG___GGAACG___
19. _RUQ_847
_________AG___AAAT_______________CGAG
20. _RUQ_847
__________________AT_________GG______AG
21. _RUQ_847
__________________AT_________GG______AG
22. _San_Juan_Block4
__________________AT_________GG_________
23. _MITC-000297
______ATAG___AAATAGAG___GGAACG___
24. _ICS_1_Fld#_73_Plt#_2
______ATAG___AAATAGAG___GGAACG___
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _NA
______CC___CCTT___GGTTAACC___ACCT
2. _NA
______CC___CCTT___GGTTAACC___ACCT
3. _NA
______CC___CCTT___GGTTAACC___ACCT
4. _NA
______CC___CCTT___GGTTAACC___ACCT
5. _NA
______CC___CCTT___GGTTAA______ACCT
6. _NA
______CC___CCTT___GGTTAACC___ACCT
7. _8903_1
____________CCTT______TT___CC___AC___
8. _8903_3
____________CCTT______TT___CC___AC___
9. _8903_5
____________CCTT______TT___CC___AC___
10. _8903_6
____________CCTT______TT___CC___AC___
11. _8903_7
____________CCTT______TT_________AC___
12. _8903_8
____________CCTT______TT___CC___AC___
13. _ICS1
______________________________CC___CCCC
14. _Cabiria
____________AACT______GG___CG___CC___
15. _RUQ_847
______________________________CC___ACCT
16. _RUQ_847
___AC___CTAC___AA_________CCAAACCT
17. _RUQ_847B
___AC___CTAC___AA_________CCAAACCT
18. _RUQ_847
AA___CC___CC______GGAAAACC___ACAG
19. _RUQ_847
____________CCTT______TT___CC___AACT
20. _RUQ_847
____________CCTT______TT___CC___AC___
21. _RUQ_847
____________CCCT______TT___CC___AC___
22. _San_Juan_Block4
____________CCTT______TT___CC___AC___
23. _MITC-000297
AA___CC___CC______GGAAAACC___ACAG
24. _ICS_1_Fld#_73_Plt#_2
AA___CC___CC______GGAAAACC___ACAG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _NA
GGTT_________GGAG___AGCTCCGTGG___
2. _NA
GGTT_________GGAG___AGCTCCGTGG___
3. _NA
GGTT_________GGAG___AGCTCCGTGG___
4. _NA
GGTT_________GGAG___AGCTCCGTGG___
5. _NA
GGTT_________GGAG___AGCTCCGTGG___
6. _NA
GGTT_________GGAG___AGCTCCGTGG___
7. _8903_1
___TT_________GG_______________GT______
8. _8903_3
___TT_________GG_______________GT______
9. _8903_5
___TT_________GG_______________GT______
10. _8903_6
___TT_________GG_______________GT______
11. _8903_7
___TT_________GG_______________GT______
12. _8903_8
___TT_________GG_______________GT______
13. _ICS1
AG_______________________________________
14. _Cabiria
___TT_________AA_______________GG______
15. _RUQ_847
GG_______________________________________
16. _RUQ_847
______CTAAGGGG___CG______CTGTGGCT
17. _RUQ_847B
______CTAAGGGG___CG______CTGTGGCT
18. _RUQ_847
___AA____________AG___AG______ACGG___
19. _RUQ_847
___TT________________________CTGTGG___
20. _RUQ_847
___TT_________GG_______________GT______
21. _RUQ_847
___CT_________GG_______________GT______
22. _San_Juan_Block4
___TT_________GG_______________GT______
23. _MITC-000297
___AA____________AG___AG______ACGG___
24. _ICS_1_Fld#_73_Plt#_2
___AA____________AG___AG______ACGG___
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _NA
GTGTGT___AC___GGAACGCGCCCCAATT
2. _NA
GTGTGT___AC___GGAACGCGCCCCAATT
3. _NA
GTGTGT___AC___GGAACGCGCCCCAATT
4. _NA
GTGTGT___AC___GGAACGCGCCCCAATT
5. _NA
GTGTGT___AC___GGAACGCGCCCCAATT
6. _NA
GTGTGT___AC___GGAACGCGCCCCAATT
7. _8903_1
________________________CG___CC______TT
8. _8903_3
________________________CG___CC______TT
9. _8903_5
________________________CG___CC______TT
10. _8903_6
________________________CG___CC______TT
11. _8903_7
________________________CG___CC______TT
12. _8903_8
________________________CG___CC______TT
13. _ICS1
GT__________________AGCGGGCT_________
14. _Cabiria
________________________GG___CC______TT
15. _RUQ_847
GT__________________AGCGCGCC_________
16. _RUQ_847
_________CTACAATT___CG_________AA___
17. _RUQ_847B
_________CTACAATT___CG_________AA___
18. _RUQ_847
ACACAC___AC___CCAGCG___GGGGAAAA
19. _RUQ_847
______GT___AC_________CGCGCC_________
20. _RUQ_847
________________________CG___CC______TT
21. _RUQ_847
________________________CG___CC______TT
22. _San_Juan_Block4
______________________________CC______TT
23. _MITC-000297
ACACAC___AC___CCAGCG___GGGGAAAA
24. _ICS_1_Fld#_73_Plt#_2
ACACAC___AC___CCAGCG___GGGGAAAA
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1. _NA
GGTT___AATTAGCT______CTCC___TTAA
2. _NA
GGTT___AATTAGCT______CTCC___TTAA
3. _NA
GGTT___AATTAGCT______CTCC___TTAA
4. _NA
GGTT___AATTAGCT______CTCC___TTAA
5. _NA
GGTT___AATTAGCT______CTCC___TTAA
6. _NA
GGTT___AATTAGCT______CTCC___TTAA
7. _8903_1
GG______AATTAG__________________TTAA
8. _8903_3
GG______AATTAG__________________TTAA
9. _8903_5
GG______AATTAG__________________TTAA
10. _8903_6
GG______AATTAG__________________TTAA
11. _8903_7
GG______AATTAG__________________TTAA
12. _8903_8
GG______AATTAG__________________TTAA
13. _ICS1
____________CT_______________CC___CC___
14. _Cabiria
CG______AATTAG__________________CCGG
15. _RUQ_847
____________TT_______________CC___TT___
16. _RUQ_847
______CG______AGCTCTAT______CT___AA
17. _RUQ_847B
______CG______AGCTCTAT______CT___AA
18. _RUQ_847
GGAA___AAAAAG_________AG______AAAA
19. _RUQ_847
_______________AG__________________TT___
20. _RUQ_847
GG______AATTAG__________________TTAA
21. _RUQ_847
GG______AATTAG__________________TTAA
22. _San_Juan_Block4
GG______AATTAG__________________TTAA
23. _MITC-000297
GGAA___AAAAAG_________AG______AAAA
24. _ICS_1_Fld#_73_Plt#_2
GGAA___AAAAAG_________AG______AAAA
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1. _NA
GTAACCAA___AATTTTTTCTGG_________
2. _NA
GTAACCAA___AATTTTTTCTGG_________
3. _NA
GTAACCAA___AATTTTTTCTGG_________
4. _NA
GTAACCAA___AATTTTTTCTGG_________
5. _NA
GTAACCAA___AATTTTTTCTGG_________
6. _NA
GTAACCAA___AATTTTTTCTGG_________
7. _8903_1
___AA____________TT______CT____________
8. _8903_3
___AA____________TT______CT____________
9. _8903_5
___AA____________TT______CT____________
10. _8903_6
___AA____________TT______CT____________
11. _8903_7
___AA____________TT______CT____________
12. _8903_8
___AA____________TT______CT____________
13. _ICS1
_________GG___TT________________________
14. _Cabiria
___AA____________CC______CC____________
15. _RUQ_847
_________AA___AA________________________
16. _RUQ_847
____________TT___TT____________GTACCT
17. _RUQ_847B
____________TT___TT____________GTACCT
18. _RUQ_847
ACAAGGAA_________AAAA___CC_________
19. _RUQ_847
GT______AA___AA________________________
20. _RUQ_847
___AA____________TT______CT____________
21. _RUQ_847
___AA____________CT______CT____________
22. _San_Juan_Block4
___AA____________TT______CT____________
23. _MITC-000297
ACAAGGAA_________AAAA___CC_________
24. _ICS_1_Fld#_73_Plt#_2
ACAAGGAA_________AAAA___CC_________
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1. _NA
CCTTCC______TTAAGG______TTTTCTGG
2. _NA
CCTTCC______TTAAGG______TTTTCTGG
3. _NA
CCTTCC______TTAAGG______TTTTCTGG
4. _NA
CCTTCC______TTAAGG______TTTTCTGG
5. _NA
CCTTCC______TTAAGG______TTTTCTGG
6. _NA
CCTTCC______TTAAGG______TTTTCTGG
7. _8903_1
___TTCC_________AA_________TT___CTGG
8. _8903_3
___TTCC_________AA_________TT___CTGG
9. _8903_5
___TTCC_________AA_________TT___CTGG
10. _8903_6
___TTCC_________AA_________TT___CTGG
11. _8903_7
___TTCC_________AA_________TT___CTGG
12. _8903_8
___TTCC_________AA_________TT___CTGG
13. _ICS1
_________________________________CT___CG
14. _Cabiria
___TTTT_________AC_________TT___CTGG
15. _RUQ_847
_________________________________TT___CC
16. _RUQ_847
___TT___TTTT_________GGGG_________GG
17. _RUQ_847B
___TT___TTTT_________GGGG_________GG
18. _RUQ_847
___AAGG______AGAAGG______AAAAAGCC
19. _RUQ_847
___TT_________CT_______________TTCTGG
20. _RUQ_847
___TTCC_________AA_________TT___CTGG
21. _RUQ_847
___TTCC_________AA_________TT___CTGG
22. _San_Juan_Block4
___TTCC_________AA_________TT___CTGG
23. _MITC-000297
___AAGG______AGAAGG______AAAAAGCC
24. _ICS_1_Fld#_73_Plt#_2
___AAGG______AGAAGG______AAAAAGCC
 127 128 129 130 131 132 133 134 135      
1. _NA
AATT______CCAAACGGAAX_XX_XX_XX_XX_X
2. _NA
AATT______CCAAACGGAAX_XX_XX_XX_XX_X
3. _NA
AATT______CCAAACGGAAX_XX_XX_XX_XX_X
4. _NA
AATT______CCAAACGGAAX_XX_XX_XX_XX_X
5. _NA
AATT______CCAAACGGAAX_XX_XX_XX_XX_X
6. _NA
AATT______CCAAACGGAAX_XX_XX_XX_XX_X
7. _8903_1
AATT_____________________X_XX_XX_XX_XX_X
8. _8903_3
AATT_____________________X_XX_XX_XX_XX_X
9. _8903_5
AATT_____________________X_XX_XX_XX_XX_X
10. _8903_6
AATT_____________________X_XX_XX_XX_XX_X
11. _8903_7
AATT_____________________X_XX_XX_XX_XX_X
12. _8903_8
AATT_____________________X_XX_XX_XX_XX_X
13. _ICS1
___________________________X_XX_XX_XX_XX_X
14. _Cabiria
GGCT_____________________X_XX_XX_XX_XX_X
15. _RUQ_847
___________________________X_XX_XX_XX_XX_X
16. _RUQ_847
______TTAT_______________X_XX_XX_XX_XX_X
17. _RUQ_847B
______TTAT_______________X_XX_XX_XX_XX_X
18. _RUQ_847
AAAA______CC___ACGGAAX_XX_XX_XX_XX_X
19. _RUQ_847
AA________________________X_XX_XX_XX_XX_X
20. _RUQ_847
AGTT_____________________X_XX_XX_XX_XX_X
21. _RUQ_847
AGTT_____________________X_XX_XX_XX_XX_X
22. _San_Juan_Block4
AATT_____________________X_XX_XX_XX_XX_X
23. _MITC-000297
AAAA______CC___ACGGAAX_XX_XX_XX_XX_X
24. _ICS_1_Fld#_73_Plt#_2
AAAA______CC___ACGGAAX_XX_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._ICS_1 NA
Location: Tree: 1
Notes: 1
 Mars, 2018
2._ICS_1 NA
Location: Tree: 3
Notes: 3
 Mars, 2018
3._ICS_1 NA
Location: Tree: 5
Notes: 5
 Mars, 2018
4._ICS_1 NA
Location: Tree: 6
Notes: 6
 Mars, 2018
5._ICS_1 NA
Location: Tree: 7
Notes: 7
 Mars, 2018
6._ICS_1 NA
Location: Tree: 8
Notes: 8
 Mars, 2018
7._ICS_1
Location: 8903 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
8._ICS_1
Location: 8903 3
 Dapeng Zhang, 2016
9._ICS_1
Location: 8903 5
 Dapeng Zhang, 2016
10._ICS_1
Location: 8903 6
 Dapeng Zhang, 2016
11._ICS_1
Location: 8903 7
 Dapeng Zhang, 2016
12._ICS_1
Location: 8903 8
 Dapeng Zhang, 2016

Center for Forestry Research and Technology Transfer Vietnam

13._ICS_1
 Jocelyn De Wever et al., 2019

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE) Costa Rica

14._ICS_1
Location: Cabiria
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

15._ICS_1 RUQ 847
 Jocelyn De Wever et al., 2019
16._ICS_1 RUQ 847
 Lambert Motilal, 2023
17._ICS_1 RUQ 847B
 Lambert Motilal, 2023
18._ICS_1 RUQ 847
Notes: Reading_Collection
 Mars, 2018
19._ICS_1 RUQ 847
 Dapeng Zhang, 2014
20._ICS_1 RUQ 847
 Dapeng Zhang, 2016
21._ICS_1 RUQ 847
 Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

22._ICS_1
Location: San Juan Block4
 Dapeng Zhang, 2016

USDA-SHRS United States of America

23._ICS_1 MITC-000297
 Mars, 2018

USDA-TARS United States of America

24._ICS_1 ICS 1_Fld#_73_Plt#_2
Location: Field: 73, Tree: 2
 Mars, 2018

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP52 10TcSNP60
11TcSNP75 12TcSNP90 13TcSNP122 14TcSNP131 15TcSNP143
16TcSNP144 17TcSNP150 18TcSNP151 19TcSNP154 20TcSNP174
21TcSNP176 22TcSNP189 23TcSNP193 24TcSNP194 25TcSNP226
26TcSNP230 27TcSNP240 28TcSNP242 29TcSNP290 30TcSNP305
31TcSNP316 32TcSNP329 33TcSNP363 34TcSNP364 35TcSNP372
36TcSNP413 37TcSNP418 38TcSNP421 39TcSNP429 40TcSNP430
41TcSNP448 42TcSNP469 43TcSNP497 44TcSNP519 45TcSNP521
46TcSNP522 47TcSNP529 48TcSNP534 49TcSNP546 50TcSNP547
51TcSNP560 52TcSNP561 53TcSNP577 54TcSNP589 55TcSNP591
56TcSNP602 57TcSNP606 58TcSNP619 59TcSNP640 60TcSNP642
61TcSNP644 62TcSNP645 63TcSNP653 64TcSNP660 65TcSNP689
66TcSNP701 67TcSNP702 68TcSNP723 69TcSNP731 70TcSNP739
71TcSNP751 72TcSNP776 73TcSNP799 74TcSNP800 75TcSNP823
76TcSNP835 77TcSNP836 78TcSNP860 79TcSNP872 80TcSNP878
81TcSNP891 82TcSNP894 83TcSNP899 84TcSNP917 85TcSNP929
86TcSNP944 87TcSNP945 88TcSNP953 89TcSNP994 90TcSNP998
91TcSNP999 92TcSNP1010 93TcSNP1019 94TcSNP1034 95TcSNP1041
96TcSNP1053 97TcSNP1060 98TcSNP1062 99TcSNP1063 100TcSNP1075
101TcSNP1096 102TcSNP1111 103TcSNP1112 104TcSNP1126 105TcSNP1144
106TcSNP1149 107TcSNP1156 108TcSNP1165 109TcSNP1175 110TcSNP1205
111TcSNP1230 112TcSNP1237 113TcSNP1242 114TcSNP1253 115TcSNP1270
116TcSNP1275 117TcSNP1293 118TcSNP1309 119TcSNP1350 120TcSNP1383
121TcSNP1401 122TcSNP1404 123TcSNP1414 124TcSNP1439 125TcSNP1442
126TcSNP1458 127TcSNP1484 128TcSNP1520 129TcSNP1524 130TcSNP1527
131Tcm001s00947643 132Tcm002s20575712 133Tcm003s01336581 134Tcm003s07402719 135Tcm006s26664133