SNP Profiles of "ICS 1" View Data

Key

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
1. _NA	GG	GG	AT	GG	CT	CT	AA	CC	AA	GT	CC	AA	AG	AA
2. _NA	GG	GG	AT	GG	CT	CT	AA	CC	AA	GT	CC	AA	AG	AA
3. _NA	GG	GG	AT	GG	CT	CT	AA	CC	AA	GT	CC	AA	AG	AA
4. _NA	GG	GG	AT	GG	CT	CT	AA	CC	AA	GT	CC	AA	AG	AA
5. _NA	GG	GG	AT	GG	CT	CT	AA	CC	AA	GT	CC	AA	AG	AA
6. _NA	GG	GG	AT	GG	CT	CT	AA	CC	AA	GT	CC	AA	AG	AA
7. _8903_1	GG	___	AT	___	___	___	___	___	AA	GT	CC	___	___	AA
8. _8903_3	GG	___	AT	___	___	___	___	___	AA	GT	CC	___	___	AA
9. _8903_5	GG	___	AT	___	___	___	___	___	AA	GT	CC	___	___	AA
10. _8903_6	GG	___	AT	___	___	___	___	___	AA	GT	CC	___	___	AA
11. _8903_7	GG	___	AT	___	___	___	___	___	AA	GT	CC	___	___	AA
12. _8903_8	GG	___	AT	___	___	___	___	___	AA	GT	CC	___	___	AA
13. _ICS1	___	___	___	___	___	___	___	___	CC	___	CT	___	AG	AC
14. _Cabiria	GG	___	AT	___	___	___	___	___	AC	GT	CC	___	___	AA
15. _RUQ_847	___	___	___	___	___	___	___	___	AA	___	CC	___	AG	AA
16. _RUQ_847	GG	CC	AT	GG	AG	AG	AA	GG	AA	AC	GG	TT	AG	AA
17. _RUQ_847	___	___	___	___	___	CT	AA	___	AA	GT	CC	___	AG	AA
18. _RUQ_847	GG	___	AT	___	___	___	___	___	AA	GT	CC	___	___	AA
19. _RUQ_847	GG	___	AT	___	___	___	___	___	AA	GT	CC	___	___	AA
20. _San_Juan_Block4	GG	___	AT	___	___	___	___	___	AA	GT	CC	___	___	AA
21. _MITC-000297	GG	CC	AT	GG	AG	AG	AA	GG	AA	AC	GG	TT	AG	AA
22. _ICS_1_Fld#_73_Plt#_2	GG	CC	AT	GG	AG	AG	AA	GG	AA	AC	GG	TT	AG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
1. _NA	CG	AG	GG	CT	AT	AG	AA	AT	CT	AG	GG	AA	CG	AG
2. _NA	CG	AG	GG	CT	AT	AG	AA	AT	CT	AG	GG	AA	CG	AG
3. _NA	CG	AG	GG	CT	AT	AG	AA	AT	CT	AG	GG	AA	CG	AG
4. _NA	CG	AG	GG	CT	AT	AG	AA	AT	CT	AG	GG	AA	CG	AG
5. _NA	CG	AG	GG	CT	AT	AG	AA	AT	CT	AG	GG	AA	CG	AG
6. _NA	CG	AG	GG	CT	AT	AG	AA	AT	CT	AG	GG	AA	CG	AG
7. _8903_1	CG	AG	___	CT	___	___	___	AT	___	___	GG	___	___	AG
8. _8903_3	CG	AG	___	CT	___	___	___	AT	___	___	GG	___	___	AG
9. _8903_5	CG	AG	___	CT	___	___	___	AT	___	___	GG	___	___	AG
10. _8903_6	CG	AG	___	CT	___	___	___	AT	___	___	GG	___	___	AG
11. _8903_7	CG	AG	___	CT	___	___	___	AT	___	___	GG	___	___	AG
12. _8903_8	CG	AG	___	CT	___	___	___	AT	___	___	GG	___	___	AG
13. _ICS1	CG	AG	___	___	___	___	AG	TT	CT	___	___	___	GG	___
14. _Cabiria	CC	AA	___	CC	___	___	___	AA	___	___	GG	___	___	AG
15. _RUQ_847	CG	AG	___	___	___	___	AA	AT	CT	___	___	___	CG	___
16. _RUQ_847	CG	AG	GG	AG	AT	AG	AA	AT	AG	AG	GG	AA	CG	___
17. _RUQ_847	CG	AG	___	CT	___	AG	AA	AT	___	___	___	___	CG	AG
18. _RUQ_847	CG	AG	___	CT	___	___	___	AT	___	___	GG	___	___	AG
19. _RUQ_847	CG	AG	___	CT	___	___	___	AT	___	___	GG	___	___	AG
20. _San_Juan_Block4	CG	AG	___	CT	___	___	___	AT	___	___	GG	___	___	___
21. _MITC-000297	CG	AG	GG	AG	AT	AG	AA	AT	AG	AG	GG	AA	CG	___
22. _ICS_1_Fld#_73_Plt#_2	CG	AG	GG	AG	AT	AG	AA	AT	AG	AG	GG	AA	CG	___

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
1. _NA	___	CC	CC	TT	GG	TT	AA	CC	AC	CT	GG	TT	GG	AG
2. _NA	___	CC	CC	TT	GG	TT	AA	CC	AC	CT	GG	TT	GG	AG
3. _NA	___	CC	CC	TT	GG	TT	AA	CC	AC	CT	GG	TT	GG	AG
4. _NA	___	CC	CC	TT	GG	TT	AA	CC	AC	CT	GG	TT	GG	AG
5. _NA	___	CC	CC	TT	GG	TT	AA	___	AC	CT	GG	TT	GG	AG
6. _NA	___	CC	CC	TT	GG	TT	AA	CC	AC	CT	GG	TT	GG	AG
7. _8903_1	___	___	CC	TT	___	TT	___	CC	AC	___	___	TT	GG	___
8. _8903_3	___	___	CC	TT	___	TT	___	CC	AC	___	___	TT	GG	___
9. _8903_5	___	___	CC	TT	___	TT	___	CC	AC	___	___	TT	GG	___
10. _8903_6	___	___	CC	TT	___	TT	___	CC	AC	___	___	TT	GG	___
11. _8903_7	___	___	CC	TT	___	TT	___	___	AC	___	___	TT	GG	___
12. _8903_8	___	___	CC	TT	___	TT	___	CC	AC	___	___	TT	GG	___
13. _ICS1	___	___	___	___	___	___	___	CC	CC	CC	AG	___	___	___
14. _Cabiria	___	___	AA	CT	___	GG	___	CG	CC	___	___	TT	AA	___
15. _RUQ_847	___	___	___	___	___	___	___	CC	AC	CT	GG	___	___	___
16. _RUQ_847	AA	CC	CC	___	GG	AA	AA	CC	AC	AG	___	AA	___	AG
17. _RUQ_847	___	___	CC	TT	___	TT	___	CC	AA	CT	___	TT	___	___
18. _RUQ_847	___	___	CC	TT	___	TT	___	CC	AC	___	___	TT	GG	___
19. _RUQ_847	___	___	CC	CT	___	TT	___	CC	AC	___	___	CT	GG	___
20. _San_Juan_Block4	___	___	CC	TT	___	TT	___	CC	AC	___	___	TT	GG	___
21. _MITC-000297	AA	CC	CC	___	GG	AA	AA	CC	AC	AG	___	AA	___	AG
22. _ICS_1_Fld#_73_Plt#_2	AA	CC	CC	___	GG	AA	AA	CC	AC	AG	___	AA	___	AG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
1. _NA	AG	CT	CC	GT	GG	GT	GT	GT	AC	GG	AA	CG	CG	CC
2. _NA	AG	CT	CC	GT	GG	GT	GT	GT	AC	GG	AA	CG	CG	CC
3. _NA	AG	CT	CC	GT	GG	GT	GT	GT	AC	GG	AA	CG	CG	CC
4. _NA	AG	CT	CC	GT	GG	GT	GT	GT	AC	GG	AA	CG	CG	CC
5. _NA	AG	CT	CC	GT	GG	GT	GT	GT	AC	GG	AA	CG	CG	CC
6. _NA	AG	CT	CC	GT	GG	GT	GT	GT	AC	GG	AA	CG	CG	CC
7. _8903_1	___	___	___	GT	___	___	___	___	___	___	___	CG	___	CC
8. _8903_3	___	___	___	GT	___	___	___	___	___	___	___	CG	___	CC
9. _8903_5	___	___	___	GT	___	___	___	___	___	___	___	CG	___	CC
10. _8903_6	___	___	___	GT	___	___	___	___	___	___	___	CG	___	CC
11. _8903_7	___	___	___	GT	___	___	___	___	___	___	___	CG	___	CC
12. _8903_8	___	___	___	GT	___	___	___	___	___	___	___	CG	___	CC
13. _ICS1	___	___	___	___	___	GT	___	___	___	___	AG	CG	GG	CT
14. _Cabiria	___	___	___	GG	___	___	___	___	___	___	___	GG	___	CC
15. _RUQ_847	___	___	___	___	___	GT	___	___	___	___	AG	CG	CG	CC
16. _RUQ_847	AG	___	___	AC	GG	AC	AC	AC	AC	CC	AG	CG	___	GG
17. _RUQ_847	___	___	CT	GT	GG	___	___	GT	AC	___	___	CG	CG	CC
18. _RUQ_847	___	___	___	GT	___	___	___	___	___	___	___	CG	___	CC
19. _RUQ_847	___	___	___	GT	___	___	___	___	___	___	___	CG	___	CC
20. _San_Juan_Block4	___	___	___	GT	___	___	___	___	___	___	___	___	___	CC
21. _MITC-000297	AG	___	___	AC	GG	AC	AC	AC	AC	CC	AG	CG	___	GG
22. _ICS_1_Fld#_73_Plt#_2	AG	___	___	AC	GG	AC	AC	AC	AC	CC	AG	CG	___	GG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
1. _NA	CC	AA	TT	GG	TT	AA	TT	AG	CT	CT	CC	TT	AA	GT
2. _NA	CC	AA	TT	GG	TT	AA	TT	AG	CT	CT	CC	TT	AA	GT
3. _NA	CC	AA	TT	GG	TT	AA	TT	AG	CT	CT	CC	TT	AA	GT
4. _NA	CC	AA	TT	GG	TT	AA	TT	AG	CT	CT	CC	TT	AA	GT
5. _NA	CC	AA	TT	GG	TT	AA	TT	AG	CT	CT	CC	TT	AA	GT
6. _NA	CC	AA	TT	GG	TT	AA	TT	AG	CT	CT	CC	TT	AA	GT
7. _8903_1	___	___	TT	GG	___	AA	TT	AG	___	___	___	TT	AA	___
8. _8903_3	___	___	TT	GG	___	AA	TT	AG	___	___	___	TT	AA	___
9. _8903_5	___	___	TT	GG	___	AA	TT	AG	___	___	___	TT	AA	___
10. _8903_6	___	___	TT	GG	___	AA	TT	AG	___	___	___	TT	AA	___
11. _8903_7	___	___	TT	GG	___	AA	TT	AG	___	___	___	TT	AA	___
12. _8903_8	___	___	TT	GG	___	AA	TT	AG	___	___	___	TT	AA	___
13. _ICS1	___	___	___	___	___	___	CT	___	___	___	CC	CC	___	___
14. _Cabiria	___	___	TT	CG	___	AA	TT	AG	___	___	___	CC	GG	___
15. _RUQ_847	___	___	___	___	___	___	TT	___	___	___	CC	TT	___	___
16. _RUQ_847	GG	AA	AA	GG	AA	AA	AA	AG	___	AG	___	AA	AA	AC
17. _RUQ_847	___	-	___	___	___	___	___	AG	-	___	___	TT	___	GT
18. _RUQ_847	___	___	TT	GG	___	AA	TT	AG	___	___	___	TT	AA	___
19. _RUQ_847	___	___	TT	GG	___	AA	TT	AG	___	___	___	TT	AA	___
20. _San_Juan_Block4	___	___	TT	GG	___	AA	TT	AG	___	___	___	TT	AA	___
21. _MITC-000297	GG	AA	AA	GG	AA	AA	AA	AG	___	AG	___	AA	AA	AC
22. _ICS_1_Fld#_73_Plt#_2	GG	AA	AA	GG	AA	AA	AA	AG	___	AG	___	AA	AA	AC

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
1. _NA	AA	CC	AA	AA	TT	TT	TT	CT	GG	CC	TT	CC	TT	AA
2. _NA	AA	CC	AA	AA	TT	TT	TT	CT	GG	CC	TT	CC	TT	AA
3. _NA	AA	CC	AA	AA	TT	TT	TT	CT	GG	CC	TT	CC	TT	AA
4. _NA	AA	CC	AA	AA	TT	TT	TT	CT	GG	CC	TT	CC	TT	AA
5. _NA	AA	CC	AA	AA	TT	TT	TT	CT	GG	CC	TT	CC	TT	AA
6. _NA	AA	CC	AA	AA	TT	TT	TT	CT	GG	CC	TT	CC	TT	AA
7. _8903_1	AA	___	___	___	TT	___	___	CT	___	___	TT	CC	___	AA
8. _8903_3	AA	___	___	___	TT	___	___	CT	___	___	TT	CC	___	AA
9. _8903_5	AA	___	___	___	TT	___	___	CT	___	___	TT	CC	___	AA
10. _8903_6	AA	___	___	___	TT	___	___	CT	___	___	TT	CC	___	AA
11. _8903_7	AA	___	___	___	TT	___	___	CT	___	___	TT	CC	___	AA
12. _8903_8	AA	___	___	___	TT	___	___	CT	___	___	TT	CC	___	AA
13. _ICS1	___	___	GG	TT	___	___	___	___	___	___	___	___	___	___
14. _Cabiria	AA	___	___	___	CC	___	___	CC	___	___	TT	TT	___	AC
15. _RUQ_847	___	___	AA	AA	___	___	___	___	___	___	___	___	___	___
16. _RUQ_847	AA	GG	AA	___	___	AA	AA	___	CC	___	AA	GG	AG	AA
17. _RUQ_847	___	___	AA	AA	___	___	___	___	___	___	TT	___	CT	___
18. _RUQ_847	AA	___	___	___	TT	___	___	CT	___	___	TT	CC	___	AA
19. _RUQ_847	AA	___	___	___	CT	___	___	CT	___	___	TT	CC	___	AA
20. _San_Juan_Block4	AA	___	___	___	TT	___	___	CT	___	___	TT	CC	___	AA
21. _MITC-000297	AA	GG	AA	___	___	AA	AA	___	CC	___	AA	GG	AG	AA
22. _ICS_1_Fld#_73_Plt#_2	AA	GG	AA	___	___	AA	AA	___	CC	___	AA	GG	AG	AA

	85	86	87	88	89	90	91	92	93	94	95	96
1. _NA	GG	TT	TT	CT	GG	AA	TT	CC	AA	AC	GG	AA	X_X	X_X
2. _NA	GG	TT	TT	CT	GG	AA	TT	CC	AA	AC	GG	AA	X_X	X_X
3. _NA	GG	TT	TT	CT	GG	AA	TT	CC	AA	AC	GG	AA	X_X	X_X
4. _NA	GG	TT	TT	CT	GG	AA	TT	CC	AA	AC	GG	AA	X_X	X_X
5. _NA	GG	TT	TT	CT	GG	AA	TT	CC	AA	AC	GG	AA	X_X	X_X
6. _NA	GG	TT	TT	CT	GG	AA	TT	CC	AA	AC	GG	AA	X_X	X_X
7. _8903_1	___	TT	___	CT	GG	AA	TT	___	___	___	___	___	X_X	X_X
8. _8903_3	___	TT	___	CT	GG	AA	TT	___	___	___	___	___	X_X	X_X
9. _8903_5	___	TT	___	CT	GG	AA	TT	___	___	___	___	___	X_X	X_X
10. _8903_6	___	TT	___	CT	GG	AA	TT	___	___	___	___	___	X_X	X_X
11. _8903_7	___	TT	___	CT	GG	AA	TT	___	___	___	___	___	X_X	X_X
12. _8903_8	___	TT	___	CT	GG	AA	TT	___	___	___	___	___	X_X	X_X
13. _ICS1	___	___	CT	___	CG	___	___	___	___	___	___	___	X_X	X_X
14. _Cabiria	___	TT	___	CT	GG	GG	CT	___	___	___	___	___	X_X	X_X
15. _RUQ_847	___	___	TT	___	CC	___	___	___	___	___	___	___	X_X	X_X
16. _RUQ_847	GG	AA	AA	AG	CC	AA	AA	CC	___	AC	GG	AA	X_X	X_X
17. _RUQ_847	___	___	TT	CT	GG	AA	___	___	___	___	___	___	X_X	X_X
18. _RUQ_847	___	TT	___	CT	GG	AG	TT	___	___	___	___	___	X_X	X_X
19. _RUQ_847	___	TT	___	CT	GG	AG	TT	___	___	___	___	___	X_X	X_X
20. _San_Juan_Block4	___	TT	___	CT	GG	AA	TT	___	___	___	___	___	X_X	X_X
21. _MITC-000297	GG	AA	AA	AG	CC	AA	AA	CC	___	AC	GG	AA	X_X	X_X
22. _ICS_1_Fld#_73_Plt#_2	GG	AA	AA	AG	CC	AA	AA	CC	___	AC	GG	AA	X_X	X_X

Key

Mars Center for Cocoa Science Brazil

1._ICS_1 NA

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Location: Tree: 1

Notes: 1

Mars, 2018

2._ICS_1 NA

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Location: Tree: 3

Notes: 3

Mars, 2018

3._ICS_1 NA

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Location: Tree: 5

Notes: 5

Mars, 2018

4._ICS_1 NA

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Location: Tree: 6

Notes: 6

Mars, 2018

5._ICS_1 NA

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Location: Tree: 7

Notes: 7

Mars, 2018

6._ICS_1 NA

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Location: Tree: 8

Notes: 8

Mars, 2018

7._ICS_1

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Location: 8903 1

Dapeng Zhang, 2016

Population Assignment:

8._ICS_1

Location: 8903 3

9._ICS_1

Location: 8903 5

10._ICS_1

Location: 8903 6

11._ICS_1

Location: 8903 7

12._ICS_1

Location: 8903 8

Center for Forestry Research and Technology Transfer Vietnam

13._ICS_1

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Jocelyn De Wever et al., 2019

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE) Costa Rica

14._ICS_1

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Location: Cabiria

Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

15._ICS_1 RUQ 847

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Jocelyn De Wever et al., 2019

16._ICS_1 RUQ 847

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Notes: Reading_Collection

17._ICS_1 RUQ 847

18._ICS_1 RUQ 847

19._ICS_1 RUQ 847

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

20._ICS_1

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Location: San Juan Block4

Dapeng Zhang, 2016

USDA-SHRS United States of America

21._ICS_1 MITC-000297

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Mars, 2018

USDA-TARS United States of America

22._ICS_1 ICS 1_Fld#_73_Plt#_2

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Location: Field: 73, Tree: 2

Mars, 2018

Key to SNP Markers

1	TcSNP25	2	TcSNP28	3	TcSNP32	4	TcSNP42	5	TcSNP60
6	TcSNP75	7	TcSNP90	8	TcSNP122	9	TcSNP144	10	TcSNP150
11	TcSNP151	12	TcSNP154	13	TcSNP174	14	TcSNP193	15	TcSNP226
16	TcSNP230	17	TcSNP240	18	TcSNP242	19	TcSNP316	20	TcSNP329
21	TcSNP364	22	TcSNP372	23	TcSNP413	24	TcSNP418	25	TcSNP429
26	TcSNP430	27	TcSNP448	28	TcSNP469	29	TcSNP497	30	TcSNP521
31	TcSNP529	32	TcSNP534	33	TcSNP547	34	TcSNP560	35	TcSNP561
36	TcSNP577	37	TcSNP591	38	TcSNP602	39	TcSNP606	40	TcSNP619
41	TcSNP645	42	TcSNP653	43	TcSNP689	44	TcSNP701	45	TcSNP702
46	TcSNP723	47	TcSNP731	48	TcSNP751	49	TcSNP776	50	TcSNP799
51	TcSNP823	52	TcSNP836	53	TcSNP860	54	TcSNP872	55	TcSNP878
56	TcSNP891	57	TcSNP894	58	TcSNP899	59	TcSNP917	60	TcSNP929
61	TcSNP944	62	TcSNP953	63	TcSNP994	64	TcSNP998	65	TcSNP999
66	TcSNP1034	67	TcSNP1041	68	TcSNP1060	69	TcSNP1062	70	TcSNP1063
71	TcSNP1075	72	TcSNP1096	73	TcSNP1111	74	TcSNP1126	75	TcSNP1144
76	TcSNP1149	77	TcSNP1156	78	TcSNP1165	79	TcSNP1175	80	TcSNP1242
81	TcSNP1253	82	TcSNP1270	83	TcSNP1309	84	TcSNP1350	85	TcSNP1383
86	TcSNP1414	87	TcSNP1439	88	TcSNP1442	89	TcSNP1458	90	TcSNP1484
91	TcSNP1520	92	Tcm001s00947643	93	Tcm002s20575712	94	Tcm003s01336581	95	Tcm003s07402719
96	Tcm006s26664133