SNP Profiles of GU 168 /H   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCTCGAGAGTTGTGGAAGTCTCTAGCC
1._RUQ_223
AATTGGGGAATTGGTTAATTCCTTGGTT
2._GU_168_/H
____GG________TT____TT__AA__
3._GC-03-023-2-12
____CC________TT____CC__GG__
4._GC-03-023-2-12
____CC________TT____CC__GG__
5._GC-03-023-2-12
____CC________TT____CC__GG__
6._GC-03-023-2-12
____CC________TT____CC__GG__
7._GC-03-023-2-12
____CC________TT____CC__GG__
8._GC-03-023-2-12
____CC________TT____CC__GG__
9._GC-03-023-2-12
____CC________TT____CC__GG__
10._GC-03-023-2-12
____CC________TT____CC__GG__
11._GC-03-023-2-12
____CC________TT____CC__GG__
12._GC-03-023-2-12
____CC________TT____CC__GG__
13._RUQ_223
____GG________TT____________
14._GC-03-023-2-12
____GG________TT____TT__AA__
15._RUQ_223
____GG________TT____CC__GG__
16._GC-03-23-2-12
____GG________AA________GG__
17._GU_168_/H
____CC________TT____CC__GG__
18._GU_168_/H
____CC________TT____CC__GG__
19._GU_168_/H
____CC________TT____CC__GG__
20._GU_168_/H
____CC________TT____CC__GG__
21._GU_168_/H
____CC________TT____CC__GG__
22._GU_168_/H
____CC________TT____CC__GG__
23._GU_168_/H
____CC________TT____CC__GG__
24._GU_168_/H
____CC________TT____CC__GG__
25._GU_168_/H
____CC________TT____CC__GG__
26._GU_168_/H
____CC________TT____CC__GG__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATCCCCAACGGGCCTTATAATTCCAGGT
1._RUQ_223
AATTCCAGCCGGGGCCAAAATTCTAAGG
2._GU_168_/H
______GG____GG____________GG
3._GC-03-023-2-12
____CCGG__GGGGGG__AA____AAGG
4._GC-03-023-2-12
____CCGG__GGGGGG__AA____AAGG
5._GC-03-023-2-12
____CCGG__GGGGGG__AA____AAGG
6._GC-03-023-2-12
____CCGG__GGGGGG__AA____AAGG
7._GC-03-023-2-12
____CCGG__GGGGGG__AA____AAGG
8._GC-03-023-2-12
____CCGG__GGGGGG__AA____AAGG
9._GC-03-023-2-12
____CCGG__GGGGGG__AA____AAGG
10._GC-03-023-2-12
____CCGG__GGGGGG__AA____AAGG
11._GC-03-023-2-12
____CCGG__GGGGGG__AA____AAGG
12._GC-03-023-2-12
____CCGG__GGGGGG__AA____AAGG
13._RUQ_223
____CCAG____GG____AA____AAGG
14._GC-03-023-2-12
____TTGG____GGGG__AA____GGGG
15._RUQ_223
______AG____GG____________GG
16._GC-03-23-2-12
______GG__GGCCCC__AA____AACC
17._GU_168_/H
______GG____GG____________GG
18._GU_168_/H
______GG____GG____________GG
19._GU_168_/H
______GG____GG____________GG
20._GU_168_/H
______GG____GG____________GG
21._GU_168_/H
______GG____GG____________GG
22._GU_168_/H
______GG____GG____________GG
23._GU_168_/H
______GG____GG____________GG
24._GU_168_/H
______GG____GG____________GG
25._GU_168_/H
______GG____GG____________GG
26._GU_168_/H
______GG____GG____________GG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTCCAACCAATTCCAATTGGAGCCCCAA
1._RUQ_223
CCCCAACCGGTTCCCCTTCCAGAACCCC
2._GU_168_/H
____GG________CC__CC__CC____
3._GC-03-023-2-12
CC__AG______CCCC______AA____
4._GC-03-023-2-12
CC__AG______CCCC__CC__AA____
5._GC-03-023-2-12
CC__AG______CCCC__CC__AA____
6._GC-03-023-2-12
CC__AG______CCCC__CC__AA____
7._GC-03-023-2-12
CC__AG______CCCC__CC__AA____
8._GC-03-023-2-12
CC__AG______CCCC__CC__AA____
9._GC-03-023-2-12
CC__AG______CCCC__CC__AA____
10._GC-03-023-2-12
CC__AG______CCCC__CC__AA____
11._GC-03-023-2-12
CC__AG______CCCC__CC__AA____
12._GC-03-023-2-12
CC__AG______CCCC__CC__AA____
13._RUQ_223
CC__________CCCC__CC__AA____
14._GC-03-023-2-12
CC__GG______TTCC__CC__CC____
15._RUQ_223
____AA________CC__CC__AA____
16._GC-03-23-2-12
____________GGCC__CC__AA____
17._GU_168_/H
____AG________CC______AA____
18._GU_168_/H
____AG________CC__CC__AA____
19._GU_168_/H
____AG________CC__CC__AA____
20._GU_168_/H
____AG________CC__CC__AA____
21._GU_168_/H
____AG________CC__CC__AA____
22._GU_168_/H
____AG________CC__CC__AA____
23._GU_168_/H
____AG________CC__CC__AA____
24._GU_168_/H
____AG________CC__CC__AA____
25._GU_168_/H
____AG________CC__CC__AA____
26._GU_168_/H
____AG________CC__CC__AA____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCACAAAATTAAGTAGCTACAATTGGAC
1._RUQ_223
TTAAGGAACCGGGGGGCCAAAATTGGCC
2._GU_168_/H
__________AA______AC________
3._GC-03-023-2-12
____GG____GG______AA________
4._GC-03-023-2-12
____GG____GG______AA________
5._GC-03-023-2-12
____GG____GG______AA________
6._GC-03-023-2-12
____GG____GG______AA________
7._GC-03-023-2-12
____GG____GG______AA________
8._GC-03-023-2-12
____GG____GG______AA________
9._GC-03-023-2-12
____GG____GG______AA________
10._GC-03-023-2-12
____GG____GG______AA________
11._GC-03-023-2-12
____GG____GG______AA________
12._GC-03-023-2-12
____GG____GG________________
13._RUQ_223
____GG____GG______AA________
14._GC-03-023-2-12
____GG____AA______AC________
15._RUQ_223
__________GG______AA________
16._GC-03-23-2-12
____GG____GG______AA________
17._GU_168_/H
__________GG______AA________
18._GU_168_/H
__________GG______AA________
19._GU_168_/H
__________GG______AA________
20._GU_168_/H
__________GG______AA________
21._GU_168_/H
__________GG______AA________
22._GU_168_/H
__________GG______AA________
23._GU_168_/H
__________GG______AA________
24._GU_168_/H
__________GG______AA________
25._GU_168_/H
__________GG______AA________
26._GU_168_/H
__________GG________________
 57 58 59            
_Input profile
CTACCTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_223
TTAATTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._GU_168_/H
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._GC-03-023-2-12
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._GC-03-023-2-12
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._GC-03-023-2-12
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._GC-03-023-2-12
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._GC-03-023-2-12
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._GC-03-023-2-12
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._GC-03-023-2-12
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._GC-03-023-2-12
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._GC-03-023-2-12
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._GC-03-023-2-12
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._RUQ_223
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._GC-03-023-2-12
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._RUQ_223
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GC-03-23-2-12
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GU_168_/H
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GU_168_/H
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._GU_168_/H
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GU_168_/H
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._GU_168_/H
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GU_168_/H
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._GU_168_/H
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._GU_168_/H
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._GU_168_/H
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._GU_168_/H
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: SPA_7_[COL] RUQ_1552

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

1._GU_168_/H RUQ_223

51.7 %
59 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

2._GU_168_/H

38.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 16
 Dapeng Zhang, 2016

3._GU_168_/H GC-03-023-2-12

37.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP3
 Mars, 2018

4._GU_168_/H GC-03-023-2-12

35.7 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

5._GU_168_/H GC-03-023-2-12

35.7 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

6._GU_168_/H GC-03-023-2-12

35.7 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP1
 Mars, 2018

7._GU_168_/H GC-03-023-2-12

35.7 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

8._GU_168_/H GC-03-023-2-12

35.7 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

9._GU_168_/H GC-03-023-2-12

35.7 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

10._GU_168_/H GC-03-023-2-12

35.7 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

11._GU_168_/H GC-03-023-2-12

35.7 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

12._GU_168_/H GC-03-023-2-12

35 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

13._GU_168_/H RUQ_223

34.4 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

14._GU_168_/H GC-03-023-2-12

32.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

15._GU_168_/H RUQ_223

30.8 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._GU_168_/H GC-03-23-2-12

29.4 %
17 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 12, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

17._GU_168_/H

25 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 12 > F
 Dapeng Zhang, 2016

18._GU_168_/H

23.1 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 2
 Dapeng Zhang, 2016

19._GU_168_/H

23.1 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 4
 Dapeng Zhang, 2016

20._GU_168_/H

23.1 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 6
 Dapeng Zhang, 2016

21._GU_168_/H

23.1 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 13
 Dapeng Zhang, 2016

22._GU_168_/H

23.1 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 15
 Dapeng Zhang, 2016

23._GU_168_/H

23.1 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 1 > FP
 Dapeng Zhang, 2016

24._GU_168_/H

23.1 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 10 > F
 Dapeng Zhang, 2016

25._GU_168_/H

23.1 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 7 > FP
 Dapeng Zhang, 2016

26._GU_168_/H

20.8 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 3
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1293 7TcSNP1275 8TcSNP1253 9TcSNP1230 10TcSNP1205
11TcSNP1144 12TcSNP1112 13TcSNP1062 14TcSNP1053 15TcSNP1019
16TcSNP1010 17TcSNP999 18TcSNP998 19TcSNP945 20TcSNP899
21TcSNP872 22TcSNP836 23TcSNP835 24TcSNP823 25TcSNP800
26TcSNP739 27TcSNP731 28TcSNP723 29TcSNP702 30TcSNP660
31TcSNP645 32TcSNP644 33TcSNP642 34TcSNP640 35TcSNP602
36TcSNP591 37TcSNP589 38TcSNP577 39TcSNP546 40TcSNP529
41TcSNP522 42TcSNP519 43TcSNP421 44TcSNP363 45TcSNP329
46TcSNP305 47TcSNP290 48TcSNP230 49TcSNP194 50TcSNP189
51TcSNP176 52TcSNP144 53TcSNP143 54TcSNP131 55TcSNP52
56TcSNP49 57TcSNP33 58TcSNP19 59TcSNP13