SNP Profiles of ICS1 View Data

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_Input profile	CC	TT	AA	AA	TT	CC	TT	CC	CG	CG	AG	GT	GG	CT
1._ICS_1	GG	_	_	_	TT	_	TT	CC	_	CG	_	_	_	_
2._ICS_1	GG	_	_	_	TT	_	TT	CC	_	CG	_	_	_	_
3._ICS_1	GG	_	_	_	TT	_	TT	CC	_	CG	_	_	_	_
4._ICS_1	GG	_	_	_	TT	_	TT	CC	_	CG	_	_	_	_
5._ICS_1	GG	_	_	_	TT	_	TT	CC	_	CG	_	_	_	_
6._ICS_1	GG	_	_	_	TT	_	TT	CC	_	CG	_	_	_	_
7._RUQ_847	GG	_	_	_	TT	_	TT	CC	_	CG	_	_	_	_
8._RUQ_847	GG	_	_	_	TT	_	TT	CC	_	CG	_	_	_	_
9._ICS_1	GG	_	_	_	TT	_	TT	CC	_	_	_	_	_	_
10._NA	GG	TT	AA	AA	TT	CC	TT	CC	CG	CG	AA	GT	GG	CT
11._NA	GG	TT	AA	AA	TT	CC	TT	CC	CG	CG	AA	GT	GG	CT
12._NA	GG	TT	AA	AA	TT	CC	TT	CC	CG	CG	AA	GT	GG	CT
13._NA	GG	TT	AA	AA	TT	CC	TT	CC	CG	CG	AA	GT	GG	CT
14._NA	GG	TT	AA	AA	TT	CC	TT	CC	CG	CG	AA	GT	GG	CT
15._NA	GG	TT	AA	AA	TT	CC	TT	CC	CG	CG	AA	GT	GG	CT
16._RUQ_847	GG	TT	AA	AA	TT	_	_	CC	CG	CG	_	_	_	CT
17._ICS_1	GG	_	_	_	CC	_	TT	CC	_	GG	_	_	_	_
18._RUQ_847	CC	AA	_	AA	AA	_	AA	GG	_	CG	AG	AC	_	AG
19._MITC-000297	CC	AA	_	AA	AA	_	AA	GG	_	CG	AG	AC	_	AG
20._ICS_1_Fld#_73_Plt#_2	CC	AA	_	AA	AA	_	AA	GG	_	CG	AG	AC	_	AG
21._ICS1	CG	CT	TT	GG	CC	CC	CT	CT	GG	CG	AG	GT	AG	CC

	15	16	17	18	19	20	21	22	23	24	25	26
_Input profile	AC	CC	CG	CT	AT	AA	AG	CG	AA	AG	CC	AA	X_X	X_X
1._ICS_1	AC	CC	_	_	AT	_	AG	CG	AA	_	CC	AA	X_X	X_X
2._ICS_1	AC	_	_	_	AT	_	AG	CG	AA	_	CC	AA	X_X	X_X
3._ICS_1	AC	CC	_	_	AT	_	AG	CG	AA	_	CC	AA	X_X	X_X
4._ICS_1	AC	CC	_	_	AT	_	AG	CG	AA	_	CC	AA	X_X	X_X
5._ICS_1	AC	CC	_	_	AT	_	AG	CG	AA	_	CC	AA	X_X	X_X
6._ICS_1	AC	CC	_	_	AT	_	AG	CG	AA	_	CC	AA	X_X	X_X
7._RUQ_847	AC	CC	_	_	AT	_	AG	CG	AA	_	CC	AA	X_X	X_X
8._RUQ_847	AC	CC	_	_	AT	_	AG	CG	AA	_	CC	AA	X_X	X_X
9._ICS_1	AC	CC	_	_	AT	_	AG	CG	AA	_	CC	AA	X_X	X_X
10._NA	AC	CC	CG	CT	AT	AA	AG	CG	AA	AG	CC	AA	X_X	X_X
11._NA	AC	_	CG	CT	AT	AA	AG	CG	AA	AG	CC	AA	X_X	X_X
12._NA	AC	CC	CG	CT	AT	AA	AG	CG	AA	AG	CC	AA	X_X	X_X
13._NA	AC	CC	CG	CT	AT	AA	AG	CG	AA	AG	CC	AA	X_X	X_X
14._NA	AC	CC	CG	CT	AT	AA	AG	CG	AA	AG	CC	AA	X_X	X_X
15._NA	AC	CC	CG	CT	AT	AA	AG	CG	AA	AG	CC	AA	X_X	X_X
16._RUQ_847	AA	CC	CG	_	AT	AA	AG	CG	AA	AG	CC	AA	X_X	X_X
17._ICS_1	CC	CG	_	_	AA	_	AA	CC	AA	_	CC	AC	X_X	X_X
18._RUQ_847	AC	CC	CG	AG	AT	AA	AG	CG	AA	AG	GG	AA	X_X	X_X
19._MITC-000297	AC	CC	CG	AG	AT	AA	AG	CG	AA	AG	GG	AA	X_X	X_X
20._ICS_1_Fld#_73_Plt#_2	AC	CC	CG	AG	AT	AA	AG	CG	AA	AG	GG	AA	X_X	X_X
21._ICS1	CC	CC	GG	CT	TT	AG	AG	CG	AC	AG	CT	CC	X_X	X_X

Input profile: ICS_1 RUQ_847

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: GBR207

Jocelyn De Wever et al., 2019

1._ICS_1

92.3 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 8

Dapeng Zhang, 2016

2._ICS_1

91.7 %
12 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 7

Dapeng Zhang, 2016

3._ICS_1

92.3 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 6

Dapeng Zhang, 2016

4._ICS_1

92.3 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 5

Dapeng Zhang, 2016

5._ICS_1

92.3 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 3

Dapeng Zhang, 2016

6._ICS_1

92.3 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

7._ICS_1 RUQ_847

92.3 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

8._ICS_1 RUQ_847

92.3 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

9._ICS_1

91.7 %
12 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block4

Dapeng Zhang, 2016

10._ICS_1 NA

92.3 %
26 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

11._ICS_1 NA

92 %
25 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

12._ICS_1 NA

92.3 %
26 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

13._ICS_1 NA

92.3 %
26 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

14._ICS_1 NA

92.3 %
26 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

15._ICS_1 NA

92.3 %
26 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

16._ICS_1 RUQ_847

90 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

17._ICS_1

38.5 %
13 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

18._ICS_1 RUQ_847

63.6 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

19._ICS_1 MITC-000297

63.6 %
22 shared markers

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USDA-SHRS, United States of America

20._ICS_1 ICS_1_Fld#_73_Plt#_2

63.6 %
22 shared markers

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USDA-TARS, United States of America

Location: Field: 73, Tree: 2

21._ICS_1 ICS1

50 %
26 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam

Location: CEFORTT

Jocelyn De Wever et al., 2019

Key to SNP Markers

Key to SNP Markers

1	TcSNP1458	2	TcSNP1439	3	TcSNP1126	4	TcSNP1111	5	TcSNP1060
6	TcSNP1041	7	TcSNP994	8	TcSNP891	9	TcSNP878	10	TcSNP872
11	TcSNP860	12	TcSNP751	13	TcSNP606	14	TcSNP602	15	TcSNP591
16	TcSNP577	17	TcSNP448	18	TcSNP413	19	TcSNP372	20	TcSNP364
21	TcSNP230	22	TcSNP226	23	TcSNP193	24	TcSNP174	25	TcSNP151
26	TcSNP144