SNP Profiles of ICS1   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
CCTTAAAATTCCTTCCCGCGAGGTGGCT
1._NA
GGTTAAAATTCCTTCCCGCGAAGTGGCT
2._NA
GGTTAAAATTCCTTCCCGCGAAGTGGCT
3._NA
GGTTAAAATTCCTTCCCGCGAAGTGGCT
4._NA
GGTTAAAATTCCTTCCCGCGAAGTGGCT
5._NA
GGTTAAAATTCCTTCCCGCGAAGTGGCT
6._NA
GGTTAAAATTCCTTCCCGCGAAGTGGCT
7._RUQ_847
GGTTAAAATT____CCCGCG______CT
8._ICS_1
GG______TT__TTCC__CG________
9._ICS_1
GG______TT__TTCC__CG________
10._ICS_1
GG______TT__TTCC__CG________
11._ICS_1
GG______TT__TTCC__CG________
12._ICS_1
GG______TT__TTCC__CG________
13._RUQ_847
GG______TT__TTCC__CG________
14._RUQ_847
GG______TT__TTCC__CG________
15._ICS_1
GG______TT__TTCC__CG________
16._ICS_1
GG______TT__TTCC____________
17._RUQ_847
GG________________CG______CT
18._RUQ_847B
GG________________CG______CT
19._RUQ_847
CCAA__AAAA__AAGG__CGAGAC__AG
20._MITC-000297
CCAA__AAAA__AAGG__CGAGAC__AG
21._ICS_1_Fld#_73_Plt#_2
CCAA__AAAA__AAGG__CGAGAC__AG
22._ICS1
CGCTTTGGCCCCCTCTGGCGAGGTAGCC
23._ICS_1
GG______CC__TTCC__GG________
 151617181920212223242526  
_Input profile
ACCCCGCTATAAAGCGAAAGCCAAX_XX_X
1._NA
ACCCCGCTATAAAGCGAAAGCCAAX_XX_X
2._NA
ACCCCGCTATAAAGCGAAAGCCAAX_XX_X
3._NA
ACCCCGCTATAAAGCGAAAGCCAAX_XX_X
4._NA
ACCCCGCTATAAAGCGAAAGCCAAX_XX_X
5._NA
ACCCCGCTATAAAGCGAAAGCCAAX_XX_X
6._NA
AC__CGCTATAAAGCGAAAGCCAAX_XX_X
7._RUQ_847
AACCCG__ATAAAGCGAAAGCCAAX_XX_X
8._ICS_1
ACCC____AT__AGCGAA__CCAAX_XX_X
9._ICS_1
ACCC____AT__AGCGAA__CCAAX_XX_X
10._ICS_1
ACCC____AT__AGCGAA__CCAAX_XX_X
11._ICS_1
ACCC____AT__AGCGAA__CCAAX_XX_X
12._ICS_1
ACCC____AT__AGCGAA__CCAAX_XX_X
13._RUQ_847
ACCC____AT__AGCGAA__CCAAX_XX_X
14._RUQ_847
ACCC____AT__AGCGAA__CCAAX_XX_X
15._ICS_1
AC______AT__AGCGAA__CCAAX_XX_X
16._ICS_1
ACCC____AT__AGCGAA__CCAAX_XX_X
17._RUQ_847
ACCC________AG________AAX_XX_X
18._RUQ_847B
ACCC________AG________AAX_XX_X
19._RUQ_847
ACCCCGAGATAAAGCGAAAGGGAAX_XX_X
20._MITC-000297
ACCCCGAGATAAAGCGAAAGGGAAX_XX_X
21._ICS_1_Fld#_73_Plt#_2
ACCCCGAGATAAAGCGAAAGGGAAX_XX_X
22._ICS1
CCCCGGCTTTAGAGCGACAGCTCCX_XX_X
23._ICS_1
CCCG____AA__AACCAA__CCACX_XX_X

Input profile: ICS_1 RUQ_847

 
 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

1._ICS_1 NA

94.2 %
26 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

2._ICS_1 NA

94.2 %
26 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

3._ICS_1 NA

94.2 %
26 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

4._ICS_1 NA

94.2 %
26 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

5._ICS_1 NA

94.2 %
26 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

6._ICS_1 NA

94 %
25 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

7._ICS_1 RUQ_847

92.5 %
20 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

8._ICS_1

92.3 %
13 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8903 3
 Dapeng Zhang, 2016

9._ICS_1

92.3 %
13 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8903 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

10._ICS_1

92.3 %
13 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8903 5
 Dapeng Zhang, 2016

11._ICS_1

92.3 %
13 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8903 6
 Dapeng Zhang, 2016

12._ICS_1

92.3 %
13 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8903 8
 Dapeng Zhang, 2016

13._ICS_1 RUQ_847

92.3 %
13 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

14._ICS_1 RUQ_847

92.3 %
13 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

15._ICS_1

91.7 %
12 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8903 7
 Dapeng Zhang, 2016

16._ICS_1

91.7 %
12 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block4
 Dapeng Zhang, 2016

17._ICS_1 RUQ_847

85.7 %
7 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

18._ICS_1 RUQ_847B

85.7 %
7 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

19._ICS_1 RUQ_847

63.6 %
22 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

20._ICS_1 MITC-000297

63.6 %
22 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

21._ICS_1 ICS_1_Fld#_73_Plt#_2

63.6 %
22 shared markers

 View  View all  Clone  Any
USDA-TARS, United States of America
Location: Field: 73, Tree: 2
 Mars, 2018

22._ICS_1 ICS1

59.6 %
26 shared markers

 View  View all  Clone  Any
Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

23._ICS_1

57.7 %
13 shared markers

 View  View all  Clone  Any
Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144