SNP Profiles of GU-133C   View Data

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 Key

 1234567891011121314
_Input profile
AACCACGGGGCCCCCCCCGGTTCCTTAA
1._GC-01-116-6-13
AACCACGGGGCCCCCCCCGGTTCCTTAA
2._GC-01-116-6-13
AACCACGGGGCCCCCCCCGGTTCCTTAA
3._GC-01-116-6-13
AACCACGGGGCCCCCCCCGGTTCCTTAA
4._GC-08-164-4-07
AACCACGGGGCCCCCCCCGGTTCCTTAA
5._GC-01-116-6-13
AACCACGGGGCCCCCCCCGGTTCCTTAA
6._GC-08-164-4-07
AACCACGGGG__CCCCCCGGTTCCTTAA
7._GC-08-164-4-07
AACCACGGGGCCCCCCCCGGTTCCTTAA
8._GC-08-164-4-07
AA__ACGGGGCCCCCCCCGGTTCCTTAA
9._GC-08-164-4-07
AACCACGGGGCCCCCCCCGGTTCCTTAA
10._GC-01-116-6-13
AACCACGGGGCCCCCCCCGGTT__TTAA
11._RUQ_190
__CCAC____CC__CC____TTCC____
12._GU_133_/C
AACCAC________CCCCGG__CC____
13._GU_133_/C
AACCAC________CCCCGG__CC____
14._GU_133_/C
AACCAC________CCCCGG__CC____
15._GU_133_/C
AACCAC________CCCCGG__CC____
16._GU_133_/C
AACCAC________CCCCGG__CC____
17._GU_133_/C
AACCAC________CCCCGG__CC____
18._GU_133_/C
AACCAC________CCCCGG__CC____
19._GU_133_/C
AACCAC________CCCCGG__CC____
20._GU_133_/C
AA__AC________CCCCGG__CC____
21._GU_133_/C
AACCAC________CCCCGG__CC____
22._GU_133_/C
AACCAC________CCCCGG________
23._RUQ_190
AACCAC________CCCCGG__CC____
24._RUQ_190
____AC____CC________________
25._RUQ_190
____AC________CC______CC____
26._GC-01-116-6-13
AA__ACGGGG__GGGG__GGAAGGAATT
27._MITC-000670
AA__ACGGGG__GGGG__GGAAGGAATT
 1516171819202122232425262728
_Input profile
CCGGGGCCGGTTAATTGGATAACCGGAA
1._GC-01-116-6-13
CCGGGGCCGGTTAATTGGATAACCGGAA
2._GC-01-116-6-13
CCGGGGCCGGTTAATTGGATAACCGGAA
3._GC-01-116-6-13
CCGGGGCCGGTTAATTGGATAACCGGAA
4._GC-08-164-4-07
CCGGGGCCGGTTAATTGGATAACCGGAA
5._GC-01-116-6-13
CCGGGGCCGGTTAATTGGATAACCGGAA
6._GC-08-164-4-07
CCGGGGCCGGTTAATTGGATAACCGGAA
7._GC-08-164-4-07
CCGGGGCCGGTTAATTGGATAACCGGAA
8._GC-08-164-4-07
CCGGGGCCGGTTAATTGGATAACCGGAA
9._GC-08-164-4-07
CCGGGGCCGGTTAATTGGATAACCGGAA
10._GC-01-116-6-13
CCGGGGCCGG__AATTGGATAACCGGAA
11._RUQ_190
______CC________GG__AACCGG__
12._GU_133_/C
__GG____GG________ATAA__GGAA
13._GU_133_/C
__GG____GG________ATAA__GGAA
14._GU_133_/C
__GG____GG________ATAA__GGAA
15._GU_133_/C
__GG____GG________ATAA__GGAA
16._GU_133_/C
__GG____GG________ATAA__GGAA
17._GU_133_/C
__GG____GG________ATAA__GGAA
18._GU_133_/C
__GG____GG________ATAA__GGAA
19._GU_133_/C
__GG____GG________ATAA__GGAA
20._GU_133_/C
__GG____GG________ATAA__GGAA
21._GU_133_/C
__GG____GG________ATAA__GGAA
22._GU_133_/C
__GG____GG________ATAA__GGAA
23._RUQ_190
__GG____GG________ATAA__GGAA
24._RUQ_190
__GGCC__________________GG__
25._RUQ_190
______GG__TT____GG__AACCCC__
26._GC-01-116-6-13
CCGGCC__GGAAGGAAGGATAAGGCCAA
27._MITC-000670
CCGGCC__GGAAGGAAGGATAAGGCCAA
 2930313233343536373839404142
_Input profile
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
1._GC-01-116-6-13
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
2._GC-01-116-6-13
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
3._GC-01-116-6-13
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
4._GC-08-164-4-07
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
5._GC-01-116-6-13
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
6._GC-08-164-4-07
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
7._GC-08-164-4-07
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
8._GC-08-164-4-07
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
9._GC-08-164-4-07
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
10._GC-01-116-6-13
TTTTGGCCCCGGTT____GGCCGGCCGG
11._RUQ_190
____GGCCCCGGTT____GGCC____GG
12._GU_133_/C
______CC__GGTT____GG________
13._GU_133_/C
______CC__GGTT____GG________
14._GU_133_/C
______CC__GGTT____GG________
15._GU_133_/C
______CC__GGTT____GG________
16._GU_133_/C
______CC__GGTT____GG________
17._GU_133_/C
______CC__GGTT____GG________
18._GU_133_/C
______CC__GGTT____GG________
19._GU_133_/C
______CC__GGTT____GG________
20._GU_133_/C
______CC__GGTT____GG________
21._GU_133_/C
______CC__GGTT____GG________
22._GU_133_/C
______CC__GGTT____GG________
23._RUQ_190
______CC__GGGT____GG________
24._RUQ_190
______CC__GG________CC______
25._RUQ_190
____GGCC________GG__CC______
26._GC-01-116-6-13
AAAAGGCCCCGGAA__CCGGGGGGGGCC
27._MITC-000670
AAAAGGCCCCGGAACCCCGGGGGGGGCC
 4344454647484950515253545556
_Input profile
TTTTAAGGAACCCCGGGGTTTTTTCCTT
1._GC-01-116-6-13
TTTTAAGGAACCCCGGGGTTTTTTCCTT
2._GC-01-116-6-13
TTTTAAGGAACCCCGGGGTTTTTTCCTT
3._GC-01-116-6-13
TTTTAAGGAACCCCGGGGTTTTTTCCTT
4._GC-08-164-4-07
TTTTAAGGAACCCCGGGGTTTTTTCCTT
5._GC-01-116-6-13
TTTTAAGGAACCCCGGGGTTTTTTCCTT
6._GC-08-164-4-07
TTTTAAGGAACCCCGGGGTTTTTTCCTT
7._GC-08-164-4-07
TTTTAAGGAACCCCGGGGTTTTTTCCTT
8._GC-08-164-4-07
TTTTAAGGAACCCCGGGGTTTTTTCCTT
9._GC-08-164-4-07
TTTTAAGGAACCCCGGGGTTTTTTCCTT
10._GC-01-116-6-13
TTTTAAGGAACCCC__GGTTTTTTCCTT
11._RUQ_190
TT____GG____________TTTT__TT
12._GU_133_/C
__TT__________________TTCC__
13._GU_133_/C
__TT__________________TTCC__
14._GU_133_/C
__TT__________________TTCC__
15._GU_133_/C
__TT__________________TTCC__
16._GU_133_/C
__TT__________________TTCC__
17._GU_133_/C
__TT__________________TTCC__
18._GU_133_/C
__TT__________________TTCC__
19._GU_133_/C
__TT__________________TTCC__
20._GU_133_/C
__TT__________________TTCC__
21._GU_133_/C
__TT__________________TTCC__
22._GU_133_/C
__TT__________________TTCC__
23._RUQ_190
__TT__________________TTCC__
24._RUQ_190
______GG____________________
25._RUQ_190
TT__AA________________TT____
26._GC-01-116-6-13
__AA__GGAAGG__GGGGAAAAAAGGAA
27._MITC-000670
__AA__GGAAGG__GGGGAAAAAAGGAA
 5758596061626364656667686970
_Input profile
GGCCCCCCAAGGGGAAGGGGGGAACCCC
1._GC-01-116-6-13
GGCCCCCCAAGGGGAAGGGGGGAACCCC
2._GC-01-116-6-13
GGCCCCCCAAGGGGAAGGGGGGAACCCC
3._GC-01-116-6-13
GGCCCCCCAAGGGGAAGGGGGGAACCCC
4._GC-08-164-4-07
GGCCCCCCAAGGGGAAGGGGGGAACCCC
5._GC-01-116-6-13
GGCCCCCCAAGGGGAA__GGGGAACCCC
6._GC-08-164-4-07
GGCCCCCCAAGGGGAAGGGGGGAACCCC
7._GC-08-164-4-07
GGCCCCCC__GGGGAAGGGGGGAACCCC
8._GC-08-164-4-07
GGCCCCCCAAGGGGAAGGGGGGAACCCC
9._GC-08-164-4-07
GGCCCCCCAAGGGGAAGGGGGGAACCCC
10._GC-01-116-6-13
GGCCCCCCAAGGGGAA__GGGGAACCCC
11._RUQ_190
__CCCCCCAA__GGAAGGGGGGAA____
12._GU_133_/C
__CC__CCAAGG__AAGGGGGG______
13._GU_133_/C
__CC__CCAAGG__AAGGGGGG______
14._GU_133_/C
__CC__CCAAGG__AAGGGGGG______
15._GU_133_/C
__CC__CCAAGG__AAGGGGGG______
16._GU_133_/C
__CC__CCAAGG__AAGGGGGG______
17._GU_133_/C
__CC__CCAAGG__AAGGGGGG______
18._GU_133_/C
__CC__CCAAGG__AA__GGGG______
19._GU_133_/C
__CC__CC__GG__AAGGGGGG______
20._GU_133_/C
__CC__CCAAGG__AAGGGGGG______
21._GU_133_/C
__CC__CCAAGG__AAGGGGGG______
22._GU_133_/C
__CC__CCAAGG__AA__GGGG______
23._RUQ_190
__CC__CCAAGG__AAGGGGGG______
24._RUQ_190
GG____________AAGG__GGAA____
25._RUQ_190
__GGCC__AA__GGAAGG________CC
26._GC-01-116-6-13
GGGGGGGGAAGGGGAAGGCCCCAA____
27._MITC-000670
GGGGGGGGAAGGGGAAGGCCCCAA____
 7172737475767778798081828384
_Input profile
GGCCACGGCCCCGGAACGCCTTAACCCC
1._GC-01-116-6-13
GGCCACGGCCCCGGAACGCCTTAACCCC
2._GC-01-116-6-13
GGCCACGGCCCCGGAACGCCTTAACCCC
3._GC-01-116-6-13
GGCCACGGCCCCGGAACGCCTTAACCCC
4._GC-08-164-4-07
GGCCACGGCCCCGGAACGCCTTAACCCC
5._GC-01-116-6-13
GGCCACGGCCCCGGAACGCCTTAACCCC
6._GC-08-164-4-07
GGCCACGGCCCCGGAACGCCTTAACCCC
7._GC-08-164-4-07
GGCCACGGCCCCGGAACGCCTTAACCCC
8._GC-08-164-4-07
GGCCACGGCCCCGGAACGCCTTAACCCC
9._GC-08-164-4-07
GGCCACGGCCCCGGAACGCCTTAACCCC
10._GC-01-116-6-13
GGCCACGGCCCCGGAACGCCTTAACCCC
11._RUQ_190
______________AACG____AACC__
12._GU_133_/C
GGCC__________AACG______CCCC
13._GU_133_/C
GGCC__________AACG______CCCC
14._GU_133_/C
GGCC__________AACG______CCCC
15._GU_133_/C
GGCC__________AACG______CCCC
16._GU_133_/C
GGCC__________AACG______CCCC
17._GU_133_/C
GGCC__________AACG______CCCC
18._GU_133_/C
GGCC__________AACG______CCCC
19._GU_133_/C
GGCC__________AACG______CCCC
20._GU_133_/C
GGCC__________AACG______CCCC
21._GU_133_/C
GGCC__________AACG______CCCC
22._GU_133_/C
GGCC__________AACG______CCCC
23._RUQ_190
AACC__________AACG______CCCC
24._RUQ_190
AA____________AACG____AA____
25._RUQ_190
________________CG________CC
26._GC-01-116-6-13
__GGACGGCCCC__AACGGGTTAAGGGG
27._MITC-000670
__GGACGGCCCC__AACGGGTTAAGGGG
 858687888990919293     
_Input profile
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
1._GC-01-116-6-13
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
2._GC-01-116-6-13
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
3._GC-01-116-6-13
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
4._GC-08-164-4-07
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
5._GC-01-116-6-13
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
6._GC-08-164-4-07
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
7._GC-08-164-4-07
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
8._GC-08-164-4-07
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
9._GC-08-164-4-07
CCCCGGCCCC__TTAAGGX_XX_XX_XX_XX_X
10._GC-01-116-6-13
CCCCGGCCCC____AAGGX_XX_XX_XX_XX_X
11._RUQ_190
____GGCCCCTT______X_XX_XX_XX_XX_X
12._GU_133_/C
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
13._GU_133_/C
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
14._GU_133_/C
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
15._GU_133_/C
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
16._GU_133_/C
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
17._GU_133_/C
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
18._GU_133_/C
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
19._GU_133_/C
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
20._GU_133_/C
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
21._GU_133_/C
CC__GG__CC__TT____X_XX_XX_XX_XX_X
22._GU_133_/C
CC__GG__CC________X_XX_XX_XX_XX_X
23._RUQ_190
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
24._RUQ_190
CC____CC__TT______X_XX_XX_XX_XX_X
25._RUQ_190
__________________X_XX_XX_XX_XX_X
26._GC-01-116-6-13
__GG____GGAAAATTGGX_XX_XX_XX_XX_X
27._MITC-000670
__GG____GGAAAATTGGX_XX_XX_XX_XX_X

Input profile: GU_133_/C GC-08-164-4-07

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

1._GU_133_/C GC-01-116-6-13

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

2._GU_133_/C GC-01-116-6-13

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

3._GU_133_/C GC-01-116-6-13

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._GU_133_/C GC-08-164-4-07

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

5._GU_133_/C GC-01-116-6-13

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

6._GU_133_/C GC-08-164-4-07

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

7._GU_133_/C GC-08-164-4-07

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

8._GU_133_/C GC-08-164-4-07

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

9._GU_133_/C GC-08-164-4-07

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

10._GU_133_/C GC-01-116-6-13

identical
85 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP3
 Mars, 2018

11._GU_133_/C RUQ_190

identical
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

12._GU_133_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 3 > FP
 Dapeng Zhang, 2016

13._GU_133_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

14._GU_133_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 9 > FP
 Dapeng Zhang, 2016

15._GU_133_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 1
 Dapeng Zhang, 2016

16._GU_133_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 2
 Dapeng Zhang, 2016

17._GU_133_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 11
 Dapeng Zhang, 2016

18._GU_133_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 1 > FP
 Dapeng Zhang, 2016

19._GU_133_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 3
 Dapeng Zhang, 2016

20._GU_133_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 8
 Dapeng Zhang, 2016

21._GU_133_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 10
 Dapeng Zhang, 2016

22._GU_133_/C

identical
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 10 > F
 Dapeng Zhang, 2016

23._GU_133_/C RUQ_190

96.2 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

24._GU_133_/C RUQ_190

90.5 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

25._GU_133_/C RUQ_190

88 %
25 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

26._GU_133_/C GC-01-116-6-13

48.7 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 13, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

27._GU_133_/C MITC-000670

48.1 %
79 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240