SNP Profiles matching ICS-1

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	AA	TT	AC	GG	AG	CC	CC	TT	CT	GG	CT	CC	CC
1._ICS_1	AA	AA	TT	AC	_	_	_	_	TT	CT	GG	_	CC	_
2._ICS_1	AA	AA	TT	AC	_	_	_	_	TT	CT	GG	_	CC	_
3._ICS_1	AA	AA	TT	AC	_	_	_	_	TT	CT	GG	_	CC	_
4._ICS_1	AA	AA	TT	AC	_	_	_	_	TT	CT	GG	_	CC	_
5._ICS_1	AA	AA	TT	AC	_	_	_	_	TT	CT	GG	_	CC	_
6._ICS_1	AA	AA	TT	AC	_	_	_	_	TT	CT	GG	_	CC	_
7._NA	AA	AA	TT	AC	GG	AG	CC	CC	TT	CT	GG	CT	CC	CC
8._NA	AA	AA	TT	AC	GG	AG	CC	CC	TT	CT	GG	CT	CC	CC
9._NA	AA	AA	TT	AC	GG	AG	CC	CC	TT	CT	GG	CT	CC	CC
10._NA	AA	AA	TT	AC	GG	AG	CC	CC	TT	CT	GG	CT	CC	CC
11._NA	AA	AA	TT	AC	GG	AG	CC	CC	TT	CT	GG	CT	CC	CC
12._PA_70_[PER]	AA	AA	TT	AC	_	_	_	_	TT	CT	GG	_	CC	_
13._GC-04-053-3-17	AA	AA	TT	AC	GG	AG	CC	CC	TT	CT	GG	CT	CC	CC
14._ICS_1	AA	AA	TT	AC	_	_	_	_	TT	CT	GG	_	CC	_
15._RUQ_847	AA	AA	TT	AC	_	_	_	_	TT	CT	GG	_	CC	_
16._RUQ_847	_	_	_	AC	_	_	_	_	TT	_	_	_	CC	_
17._RUQ_847	AA	AA	CT	AC	_	_	_	_	TT	CT	GG	_	CC	_
18._RUQ_847	_	_	TT	AA	_	_	CT	_	TT	_	_	CT	CC	_
19._RUQ_817	_	_	TT	AA	_	_	CT	_	TT	_	_	CT	CC	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AT	CC	AA	AA	GG	CG	GG	CT	AG	TT	AG	AT	AT	CG
1._ICS_1	_	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_
2._ICS_1	_	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_
3._ICS_1	_	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_
4._ICS_1	_	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_
5._ICS_1	_	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_
6._ICS_1	_	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_
7._NA	AT	CC	AA	AA	GG	CG	GG	CT	AG	TT	AG	AT	AT	CG
8._NA	AT	CC	AA	AA	GG	CG	GG	CT	AG	TT	AG	AT	AT	CG
9._NA	AT	CC	AA	AA	GG	CG	GG	CT	AG	TT	AG	AT	AT	CG
10._NA	AT	CC	AA	AA	GG	CG	GG	CT	AG	TT	AG	AT	AT	CG
11._NA	AT	CC	AA	AA	GG	CG	GG	CT	AG	TT	AG	AT	AT	CG
12._PA_70_[PER]	_	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_
13._GC-04-053-3-17	AT	CC	AA	AA	GG	CG	GG	CT	AG	TT	AG	AT	AT	CG
14._ICS_1	_	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_
15._RUQ_847	_	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_
16._RUQ_847	_	_	AG	_	_	CG	_	CT	_	_	AG	_	AT	CG
17._RUQ_847	_	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_
18._RUQ_847	_	_	_	_	_	CG	_	_	_	_	AG	_	AT	CG
19._RUQ_817	_	_	_	_	_	CG	_	_	_	_	AG	_	AT	CG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CG	AA	CT	GG	AA	AA	AG	GT	GG	GT	AA	CT	AA	CC
1._ICS_1	CG	AA	_	_	_	_	AG	GT	_	_	AA	_	_	_
2._ICS_1	CG	AA	_	_	_	_	AG	GT	_	_	AA	_	_	_
3._ICS_1	CG	AA	_	_	_	_	AG	GT	_	_	AA	_	_	_
4._ICS_1	CG	AA	_	_	_	_	AG	GT	_	_	AA	_	_	_
5._ICS_1	CG	AA	_	_	_	_	AG	GT	_	_	AA	_	_	_
6._ICS_1	CG	AA	_	_	_	_	AG	GT	_	_	AA	_	_	_
7._NA	CG	AA	CT	GG	AA	AA	AG	GT	GG	GT	AA	CT	AA	CC
8._NA	CG	AA	CT	GG	AA	AA	AG	GT	GG	GT	AA	CT	AA	CC
9._NA	CG	AA	CT	GG	AA	AA	AG	GT	GG	GT	AA	CT	AA	CC
10._NA	CG	AA	CT	GG	AA	AA	AG	GT	GG	GT	AA	CT	AA	CC
11._NA	CG	AA	CT	GG	AA	AA	AG	GT	GG	GT	AA	CT	AA	CC
12._PA_70_[PER]	CG	AA	_	_	_	_	AG	GT	_	_	AA	_	_	_
13._GC-04-053-3-17	CG	AA	CT	GG	AA	AA	AG	GT	GG	GT	AA	CT	AA	CC
14._ICS_1	_	AA	_	_	_	_	AG	GT	_	_	AA	_	_	_
15._RUQ_847	CG	AA	_	_	_	_	AG	GT	_	_	AG	_	_	_
16._RUQ_847	CG	_	_	_	AA	_	_	_	_	GT	_	CT	_	_
17._RUQ_847	CG	AA	_	_	_	_	AG	GT	_	_	AG	_	_	_
18._RUQ_847	CG	_	_	_	AA	AA	AG	GT	_	_	AA	CT	_	_
19._RUQ_817	CG	_	_	_	AA	AA	AG	GT	_	_	AA	CT	_	_

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	GT	AA	CC	GG	AG	AG	TT	CC	GG	GG	GT	TT	CC	TT
1._ICS_1	_	_	CC	_	_	_	_	_	_	_	_	_	CC	TT
2._ICS_1	_	_	CC	_	_	_	_	_	_	_	_	_	CC	TT
3._ICS_1	_	_	CC	_	_	_	_	_	_	_	_	_	CC	TT
4._ICS_1	_	_	CC	_	_	_	_	_	_	_	_	_	CC	TT
5._ICS_1	_	_	CC	_	_	_	_	_	_	_	_	_	CC	TT
6._ICS_1	_	_	CC	_	_	_	_	_	_	_	_	_	CC	TT
7._NA	GT	AA	CC	GG	AG	AG	TT	CC	GG	GG	GT	TT	CC	TT
8._NA	GT	AA	CC	GG	AG	AG	TT	CC	GG	GG	GT	TT	CC	TT
9._NA	GT	AA	CC	GG	AG	AG	TT	CC	GG	GG	GT	TT	CC	TT
10._NA	GT	AA	CC	GG	AG	AG	TT	CC	GG	GG	GT	TT	CC	TT
11._NA	GT	AA	CC	GG	AG	AG	TT	CC	GG	GG	GT	TT	CC	TT
12._PA_70_[PER]	_	_	CC	_	_	_	_	_	_	_	_	_	CC	TT
13._GC-04-053-3-17	GT	AA	CC	GG	AG	AG	TT	CC	GG	GG	GT	TT	CC	TT
14._ICS_1	_	_	CC	_	_	_	_	_	_	_	_	_	CC	TT
15._RUQ_847	_	_	CC	_	_	_	_	_	_	_	_	_	CC	TT
16._RUQ_847	_	AA	_	GG	_	_	_	_	_	_	_	_	CC	_
17._RUQ_847	_	_	CC	_	_	_	_	_	_	_	_	_	CC	TT
18._RUQ_847	GT	AA	_	_	AG	_	_	_	_	_	_	CT	CC	_
19._RUQ_817	GT	AA	_	_	AG	_	_	_	_	_	_	CT	CC	_

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	GT	AA	CG	TT	CT	AA	GG	AA	AA	AG	TT	GT	GG	CT
1._ICS_1	_	_	CG	_	CT	AA	GG	_	AA	AG	TT	GT	_	_
2._ICS_1	_	_	CG	_	CT	AA	GG	_	AA	AG	TT	GT	_	_
3._ICS_1	_	_	CG	_	CT	AA	GG	_	AA	AG	TT	GT	_	_
4._ICS_1	_	_	CG	_	CT	AA	GG	_	AA	AG	TT	GT	_	_
5._ICS_1	_	_	CG	_	CT	AA	GG	_	AA	AG	TT	GT	_	_
6._ICS_1	_	_	CG	_	CT	AA	GG	_	AA	AG	TT	GT	_	_
7._NA	GT	AA	CG	TT	CT	AA	GG	AA	AA	AG	TT	GT	GG	CT
8._NA	GT	AA	CG	TT	CT	AA	GG	AA	AA	AG	TT	GT	GG	CT
9._NA	GT	AA	CG	TT	CT	AA	GG	AA	AA	AG	TT	GT	GG	CT
10._NA	GT	AA	CG	TT	CT	AA	GG	AA	AA	AG	TT	GT	GG	CT
11._NA	GT	AA	CG	TT	CT	AA	GG	AA	AA	AG	TT	GT	GG	CT
12._PA_70_[PER]	_	_	CG	_	CT	AA	GG	_	AA	AG	TT	GT	_	_
13._GC-04-053-3-17	GT	AA	CG	TT	CT	AA	GG	AA	AA	AG	TT	GT	GG	CT
14._ICS_1	_	_	CG	_	CT	AA	GG	_	AA	AG	TT	GT	_	_
15._RUQ_847	_	_	CG	_	CT	AA	GG	_	AA	AG	TT	GT	_	_
16._RUQ_847	_	_	CG	TT	_	AA	_	AA	AA	AG	_	_	_	_
17._RUQ_847	_	_	CG	_	CT	AA	GG	_	AA	AG	TT	GT	_	_
18._RUQ_847	GT	-	CG	TT	CT	AA	_	AA	AA	AG	TT	GT	GG	_
19._RUQ_817	GT	-	CG	TT	CT	AA	_	AA	AA	AG	TT	GT	GG	_

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	CC	GG	TT	AC	GG	CC	AA	AA	CC	GG	CT	AA	AC	TT
1._ICS_1	_	GG	TT	_	_	_	_	_	CC	GG	_	_	_	TT
2._ICS_1	_	GG	TT	_	_	_	_	_	CC	GG	_	_	_	TT
3._ICS_1	_	GG	TT	_	_	_	_	_	CC	GG	_	_	_	TT
4._ICS_1	_	GG	TT	_	_	_	_	_	CC	GG	_	_	_	TT
5._ICS_1	_	GG	TT	_	_	_	_	_	CC	GG	_	_	_	TT
6._ICS_1	_	GG	TT	_	_	_	_	_	CC	GG	_	_	_	TT
7._NA	CC	GG	TT	AC	GG	CC	AA	AA	CC	GG	CT	AA	AC	TT
8._NA	CC	GG	TT	AC	GG	CC	AA	AA	CC	GG	CT	AA	AC	TT
9._NA	CC	GG	TT	AC	GG	CC	AA	AA	CC	GG	CT	AA	AC	TT
10._NA	CC	GG	TT	AC	GG	CC	AA	AA	CC	GG	CT	AA	AC	TT
11._NA	CC	GG	TT	AC	GG	CC	AA	AA	CC	GG	CT	AA	AC	TT
12._PA_70_[PER]	_	GG	TT	_	_	_	_	_	CC	GG	_	_	_	TT
13._GC-04-053-3-17	CC	GG	TT	AC	GG	CC	AA	AA	CC	GG	CT	AA	AC	TT
14._ICS_1	_	GG	TT	_	_	_	_	_	CC	GG	_	_	_	TT
15._RUQ_847	_	GG	TT	_	_	_	_	_	CC	GG	_	_	_	TT
16._RUQ_847	CC	_	_	_	_	_	_	_	_	CC	_	_	_	_
17._RUQ_847	_	GG	TT	_	_	_	_	_	CC	GG	_	_	_	CT
18._RUQ_847	_	_	_	_	_	_	_	_	CC	GG	_	_	AC	TT
19._RUQ_817	_	_	_	_	_	_	_	_	CC	GG	_	_	AC	TT

	85	86	87	88	89	90	91	92	93	94
_Input profile	TT	TT	TT	AG	CT	CT	TT	TT	AA	GG	X_X	X_X	X_X	X_X
1._ICS_1	TT	TT	_	AG	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X
2._ICS_1	TT	TT	_	AG	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X
3._ICS_1	TT	TT	_	AG	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X
4._ICS_1	TT	TT	_	AG	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X
5._ICS_1	TT	TT	_	AG	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X
6._ICS_1	TT	TT	_	AG	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X
7._NA	TT	TT	TT	AG	CT	CT	TT	TT	AA	GG	X_X	X_X	X_X	X_X
8._NA	TT	TT	TT	AG	CT	CT	TT	TT	AA	GG	X_X	X_X	X_X	X_X
9._NA	TT	TT	TT	AG	CT	CT	TT	TT	AA	GG	X_X	X_X	X_X	X_X
10._NA	TT	TT	TT	AG	CT	CT	TT	TT	AA	GG	X_X	X_X	X_X	X_X
11._NA	TT	TT	TT	AG	CT	CT	TT	TT	AA	GG	X_X	X_X	X_X	X_X
12._PA_70_[PER]	TT	TT	_	AG	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X
13._GC-04-053-3-17	TT	TT	TT	AG	CT	CT	TT	TT	AA	GG	X_X	X_X	X_X	X_X
14._ICS_1	TT	TT	_	_	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X
15._RUQ_847	TT	TT	_	AG	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X
16._RUQ_847	TT	_	_	_	_	_	_	_	_	_	X_X	X_X	X_X	X_X
17._RUQ_847	TT	CT	_	AG	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X
18._RUQ_847	_	_	_	AG	-	CT	TT	_	_	_	X_X	X_X	X_X	X_X
19._RUQ_817	_	_	_	AG	-	CT	TT	_	_	_	X_X	X_X	X_X	X_X

Input profile: ICS_1 NA

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

1._ICS_1

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 8

Dapeng Zhang, 2016

2._ICS_1

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 7

Dapeng Zhang, 2016

3._ICS_1

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 6

Dapeng Zhang, 2016

4._ICS_1

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 5

Dapeng Zhang, 2016

5._ICS_1

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 3

Dapeng Zhang, 2016

6._ICS_1

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

7._ICS_1 NA

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

8._ICS_1 NA

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

9._ICS_1 NA

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

10._ICS_1 NA

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

11._ICS_1 NA

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

12._PA_70_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4317 2 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

13._PA_70_[PER] GC-04-053-3-17

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1 (roxo)

14._ICS_1

identical
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block4

Dapeng Zhang, 2016

15._ICS_1 RUQ_847

98.7 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

16._ICS_1 RUQ_847

94 %
25 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: GBR207

Jocelyn De Wever et al., 2019

17._ICS_1 RUQ_847

94.9 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

18._ICS_1 RUQ_847

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

19._ICS_5 RUQ_817

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP860	18	TcSNP1062	19	TcSNP836	20	TcSNP878
21	TcSNP929	22	TcSNP413	23	TcSNP653	24	TcSNP1149	25	TcSNP174
26	TcSNP32	27	TcSNP372	28	TcSNP448	29	TcSNP872	30	TcSNP953
31	TcSNP1034	32	TcSNP1175	33	TcSNP1111	34	TcSNP90	35	TcSNP998
36	TcSNP150	37	TcSNP28	38	TcSNP751	39	TcSNP1484	40	TcSNP602
41	TcSNP561	42	TcSNP894	43	TcSNP1063	44	TcSNP1126	45	TcSNP1270
46	TcSNP606	47	TcSNP329	48	TcSNP689	49	TcSNP944	50	TcSNP1242
51	TcSNP1383	52	TcSNP547	53	TcSNP776	54	TcSNP1309	55	TcSNP151
56	TcSNP1520	57	TcSNP799	58	TcSNP899	59	TcSNP226	60	TcSNP1439
61	TcSNP1442	62	TcSNP193	63	TcSNP25	64	TcSNP364	65	TcSNP144
66	TcSNP230	67	TcSNP560	68	TcSNP723	69	TcSNP731	70	TcSNP701
71	TcSNP1041	72	TcSNP645	73	TcSNP917	74	Tcm003s01336581	75	Tcm003s07402719
76	Tcm001s00947643	77	Tcm006s26664133	78	Tcm002s20575712	79	TcSNP529	80	TcSNP1458
81	TcSNP60	82	TcSNP430	83	TcSNP823	84	TcSNP619	85	TcSNP994
86	TcSNP1144	87	TcSNP1156	88	TcSNP469	89	TcSNP999	90	TcSNP242
91	TcSNP1253	92	TcSNP1414	93	TcSNP154	94	TcSNP240