SNP Profiles matching ICS 1

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAATTACGGAGCCCCTTCTGGCTCCCC
1._NA
AAAATTACGGAGCCCCTTCTGGCTCCCC
2._NA
AAAATTACGGAGCCCCTTCTGGCTCCCC
3._NA
AAAATTACGGAGCCCCTTCTGGCTCCCC
4._NA
AAAATTACGGAGCCCCTTCTGGCTCCCC
5._NA
AAAATTACGGAGCCCCTTCTGGCTCCCC
6._GC-04-053-3-17
AAAATTACGGAGCCCCTTCTGGCTCCCC
7._ICS_1
AAAATTAC________TTCTGG__CC__
8._ICS_1
AAAATTAC________TTCTGG__CC__
9._ICS_1
AAAATTAC________TTCTGG__CC__
10._ICS_1
AAAATTAC________TTCTGG__CC__
11._ICS_1
AAAATTAC________TTCTGG__CC__
12._ICS_1
AAAATTAC________TTCTGG__CC__
13._PA_70_[PER]
AAAATTAC________TTCTGG__CC__
14._ICS_1
AAAATTAC________TTCTGG__CC__
15._RUQ_847
AAAATTAC________TTCTGG__CC__
16._RUQ_847
____TTAA____CT__TT____CTCC__
17._RUQ_817
____TTAA____CT__TT____CTCC__
18._MARPER_45
AAAATT____________CTGG__CC__
19._RUQ_847
AAAACTAC________TTCTGG__CC__
20._RUQ_847
______AC________TT______CC__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATCCAAAAGGCGGGCTAGTTAGATATCG
1._NA
ATCCAAAAGGCGGGCTAGTTAGATATCG
2._NA
ATCCAAAAGGCGGGCTAGTTAGATATCG
3._NA
ATCCAAAAGGCGGGCTAGTTAGATATCG
4._NA
ATCCAAAAGGCGGGCTAGTTAGATATCG
5._NA
ATCCAAAAGGCGGGCTAGTTAGATATCG
6._GC-04-053-3-17
ATCCAAAAGGCGGGCTAGTTAGATATCG
7._ICS_1
______AA____GG________ATAT__
8._ICS_1
______AA____GG________ATAT__
9._ICS_1
______AA____GG________ATAT__
10._ICS_1
______AA____GG________ATAT__
11._ICS_1
______AA____GG________ATAT__
12._ICS_1
______AA____GG________ATAT__
13._PA_70_[PER]
______AA____GG________ATAT__
14._ICS_1
______AA____GG________ATAT__
15._RUQ_847
______AA____GG________ATAT__
16._RUQ_847
__________CG________AG__ATCG
17._RUQ_817
__________CG________AG__ATCG
18._MARPER_45
______AATT__GG________AT____
19._RUQ_847
______AA____GG________ATAT__
20._RUQ_847
____AG____CG__CT____AG__ATCG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CGAACTGGAAAAAGGTGGGTAACTAACC
1._NA
CGAACTGGAAAAAGGTGGGTAACTAACC
2._NA
CGAACTGGAAAAAGGTGGGTAACTAACC
3._NA
CGAACTGGAAAAAGGTGGGTAACTAACC
4._NA
CGAACTGGAAAAAGGTGGGTAACTAACC
5._NA
CGAACTGGAAAAAGGTGGGTAACTAACC
6._GC-04-053-3-17
CGAACTGGAAAAAGGTGGGTAACTAACC
7._ICS_1
CGAA________AGGT____AA______
8._ICS_1
CGAA________AGGT____AA______
9._ICS_1
CGAA________AGGT____AA______
10._ICS_1
CGAA________AGGT____AA______
11._ICS_1
CGAA________AGGT____AA______
12._ICS_1
CGAA________AGGT____AA______
13._PA_70_[PER]
CGAA________AGGT____AA______
14._ICS_1
__AA________AGGT____AA______
15._RUQ_847
CGAA________AGGT____AG______
16._RUQ_847
CG______AAAAAGGT____AACT____
17._RUQ_817
CG______AAAAAGGT____AACT____
18._MARPER_45
__AA________AGGT____AA______
19._RUQ_847
CGAA________AGGT____AG______
20._RUQ_847
CG______AA________GT__CT____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GTAACCGGAGAGTTCCGGGGGTTTCCTT
1._NA
GTAACCGGAGAGTTCCGGGGGTTTCCTT
2._NA
GTAACCGGAGAGTTCCGGGGGTTTCCTT
3._NA
GTAACCGGAGAGTTCCGGGGGTTTCCTT
4._NA
GTAACCGGAGAGTTCCGGGGGTTTCCTT
5._NA
GTAACCGGAGAGTTCCGGGGGTTTCCTT
6._GC-04-053-3-17
GTAACCGGAGAGTTCCGGGGGTTTCCTT
7._ICS_1
____CC__________________CCTT
8._ICS_1
____CC__________________CCTT
9._ICS_1
____CC__________________CCTT
10._ICS_1
____CC__________________CCTT
11._ICS_1
____CC__________________CCTT
12._ICS_1
____CC__________________CCTT
13._PA_70_[PER]
____CC__________________CCTT
14._ICS_1
____CC__________________CCTT
15._RUQ_847
____CC__________________CCTT
16._RUQ_847
GTAA____AG____________CTCC__
17._RUQ_817
GTAA____AG____________CTCC__
18._MARPER_45
____CC____________________TT
19._RUQ_847
____CC__________________CCTT
20._RUQ_847
__AA__GG________________CC__
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GTAACGTTCTAAGGAAAAAGTTGTGGCT
1._NA
GTAACGTTCTAAGGAAAAAGTTGTGGCT
2._NA
GTAACGTTCTAAGGAAAAAGTTGTGGCT
3._NA
GTAACGTTCTAAGGAAAAAGTTGTGGCT
4._NA
GTAACGTTCTAAGGAAAAAGTTGTGGCT
5._NA
GTAACGTTCTAAGGAAAAAGTTGTGGCT
6._GC-04-053-3-17
GTAACGTTCTAAGGAAAAAGTTGTGGCT
7._ICS_1
____CG__CTAAGG__AAAGTTGT____
8._ICS_1
____CG__CTAAGG__AAAGTTGT____
9._ICS_1
____CG__CTAAGG__AAAGTTGT____
10._ICS_1
____CG__CTAAGG__AAAGTTGT____
11._ICS_1
____CG__CTAAGG__AAAGTTGT____
12._ICS_1
____CG__CTAAGG__AAAGTTGT____
13._PA_70_[PER]
____CG__CTAAGG__AAAGTTGT____
14._ICS_1
____CG__CTAAGG__AAAGTTGT____
15._RUQ_847
____CG__CTAAGG__AAAGTTGT____
16._RUQ_847
GT__CGTTCTAA__AAAAAGTTGTGG__
17._RUQ_817
GT__CGTTCTAA__AAAAAGTTGTGG__
18._MARPER_45
________CT________AG__GT____
19._RUQ_847
____CG__CTAAGG__AAAGTTGT____
20._RUQ_847
____CGTT__AA__AAAAAG________
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCGGTTACGGCCAAAACCGGCTAAACTT
1._NA
CCGGTTACGGCCAAAACCGGCTAAACTT
2._NA
CCGGTTACGGCCAAAACCGGCTAAACTT
3._NA
CCGGTTACGGCCAAAACCGGCTAAACTT
4._NA
CCGGTTACGGCCAAAACCGGCTAAACTT
5._NA
CCGGTTACGGCCAAAACCGGCTAAACTT
6._GC-04-053-3-17
CCGGTTACGGCCAAAACCGGCTAAACTT
7._ICS_1
__GGTT__________CCGG______TT
8._ICS_1
__GGTT__________CCGG______TT
9._ICS_1
__GGTT__________CCGG______TT
10._ICS_1
__GGTT__________CCGG______TT
11._ICS_1
__GGTT__________CCGG______TT
12._ICS_1
__GGTT__________CCGG______TT
13._PA_70_[PER]
__GGTT__________CCGG______TT
14._ICS_1
__GGTT__________CCGG______TT
15._RUQ_847
__GGTT__________CCGG______TT
16._RUQ_847
________________CCGG____ACTT
17._RUQ_817
________________CCGG____ACTT
18._MARPER_45
__GG____________CCGG______TT
19._RUQ_847
__GGTT__________CCGG______CT
20._RUQ_847
CC________________CC________
 85 86 87 88 89 90 91 92 93 94     
_Input profile
TTTTTTAGCTCTTTTTAAGGX_XX_XX_XX_X
1._NA
TTTTTTAGCTCTTTTTAAGGX_XX_XX_XX_X
2._NA
TTTTTTAGCTCTTTTTAAGGX_XX_XX_XX_X
3._NA
TTTTTTAGCTCTTTTTAAGGX_XX_XX_XX_X
4._NA
TTTTTTAGCTCTTTTTAAGGX_XX_XX_XX_X
5._NA
TTTTTTAGCTCTTTTTAAGGX_XX_XX_XX_X
6._GC-04-053-3-17
TTTTTTAGCTCTTTTTAAGGX_XX_XX_XX_X
7._ICS_1
TTTT__AG__CTTTTT____X_XX_XX_XX_X
8._ICS_1
TTTT__AG__CTTTTT____X_XX_XX_XX_X
9._ICS_1
TTTT__AG__CTTTTT____X_XX_XX_XX_X
10._ICS_1
TTTT__AG__CTTTTT____X_XX_XX_XX_X
11._ICS_1
TTTT__AG__CTTTTT____X_XX_XX_XX_X
12._ICS_1
TTTT__AG__CTTTTT____X_XX_XX_XX_X
13._PA_70_[PER]
TTTT__AG__CTTTTT____X_XX_XX_XX_X
14._ICS_1
TTTT______CTTTTT____X_XX_XX_XX_X
15._RUQ_847
TTTT__AG__CTTTTT____X_XX_XX_XX_X
16._RUQ_847
______AG__CTTT______X_XX_XX_XX_X
17._RUQ_817
______AG__CTTT______X_XX_XX_XX_X
18._MARPER_45
TT____AG__CT________X_XX_XX_XX_X
19._RUQ_847
TTCT__AG__CTTTTT____X_XX_XX_XX_X
20._RUQ_847
TT__________________X_XX_XX_XX_X

Input profile: ICS_1 NA

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 7