SNP Profiles matching ICS 1

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAATTACGGAGCCCCTTCTGGCTCCCC
1._ICS_1___
AAAATTACGGAGCCCCTTCTGGCTCCCC
2._ICS_1___
AAAATTACGGAGCCCCTTCTGGCTCCCC
3._ICS_1___
AAAATTACGGAGCCCCTTCTGGCTCCCC
4._ICS_1___
AAAATTACGGAGCCCCTTCTGGCTCCCC
5._ICS_1___
AAAATTACGGAGCCCCTTCTGGCTCCCC
6._PA_70_[PER]___
AAAATTACGGAGCCCCTTCTGGCTCCCC
7._ICS_1___
AAAATTAC________TTCTGG__CC__
8._ICS_1___
AAAATTAC________TTCTGG__CC__
9._ICS_1___
AAAATTAC________TTCTGG__CC__
10._ICS_1___
AAAATTAC________TTCTGG__CC__
11._ICS_1___
AAAATTAC________TTCTGG__CC__
12._ICS_1___
AAAATTAC________TTCTGG__CC__
13._PA_70_[PER]___
AAAATTAC________TTCTGG__CC__
14._ICS_1___
AAAATTAC________TTCTGG__CC__
15._ICS_1___
AAAATTAC________TTCTGG__CC__
16._ICS_1___
____TTAA____CT__TT____CTCC__
17._ICS_5___
____TTAA____CT__TT____CTCC__
18._MARPER_45___
AAAATT____________CTGG__CC__
19._ICS_1___
AAAACTAC________TTCTGG__CC__
20._ICS_1___
______AC________TT______CC__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATCCAAAAGGCGGGCTAGTTAGATATCG
1._ICS_1___
ATCCAAAAGGCGGGCTAGTTAGATATCG
2._ICS_1___
ATCCAAAAGGCGGGCTAGTTAGATATCG
3._ICS_1___
ATCCAAAAGGCGGGCTAGTTAGATATCG
4._ICS_1___
ATCCAAAAGGCGGGCTAGTTAGATATCG
5._ICS_1___
ATCCAAAAGGCGGGCTAGTTAGATATCG
6._PA_70_[PER]___
ATCCAAAAGGCGGGCTAGTTAGATATCG
7._ICS_1___
______AA____GG________ATAT__
8._ICS_1___
______AA____GG________ATAT__
9._ICS_1___
______AA____GG________ATAT__
10._ICS_1___
______AA____GG________ATAT__
11._ICS_1___
______AA____GG________ATAT__
12._ICS_1___
______AA____GG________ATAT__
13._PA_70_[PER]___
______AA____GG________ATAT__
14._ICS_1___
______AA____GG________ATAT__
15._ICS_1___
______AA____GG________ATAT__
16._ICS_1___
__________CG________AG__ATCG
17._ICS_5___
__________CG________AG__ATCG
18._MARPER_45___
______AATT__GG________AT____
19._ICS_1___
______AA____GG________ATAT__
20._ICS_1___
____AG____CG__CT____AG__ATCG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CGAACTGGAAAAAGGTGGGTAACTAACC
1._ICS_1___
CGAACTGGAAAAAGGTGGGTAACTAACC
2._ICS_1___
CGAACTGGAAAAAGGTGGGTAACTAACC
3._ICS_1___
CGAACTGGAAAAAGGTGGGTAACTAACC
4._ICS_1___
CGAACTGGAAAAAGGTGGGTAACTAACC
5._ICS_1___
CGAACTGGAAAAAGGTGGGTAACTAACC
6._PA_70_[PER]___
CGAACTGGAAAAAGGTGGGTAACTAACC
7._ICS_1___
CGAA________AGGT____AA______
8._ICS_1___
CGAA________AGGT____AA______
9._ICS_1___
CGAA________AGGT____AA______
10._ICS_1___
CGAA________AGGT____AA______
11._ICS_1___
CGAA________AGGT____AA______
12._ICS_1___
CGAA________AGGT____AA______
13._PA_70_[PER]___
CGAA________AGGT____AA______
14._ICS_1___
__AA________AGGT____AA______
15._ICS_1___
CGAA________AGGT____AG______
16._ICS_1___
CG______AAAAAGGT____AACT____
17._ICS_5___
CG______AAAAAGGT____AACT____
18._MARPER_45___
__AA________AGGT____AA______
19._ICS_1___
CGAA________AGGT____AG______
20._ICS_1___
CG______AA________GT__CT____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GTAACCGGAGAGTTCCGGGGGTTTCCTT
1._ICS_1___
GTAACCGGAGAGTTCCGGGGGTTTCCTT
2._ICS_1___
GTAACCGGAGAGTTCCGGGGGTTTCCTT
3._ICS_1___
GTAACCGGAGAGTTCCGGGGGTTTCCTT
4._ICS_1___
GTAACCGGAGAGTTCCGGGGGTTTCCTT
5._ICS_1___
GTAACCGGAGAGTTCCGGGGGTTTCCTT
6._PA_70_[PER]___
GTAACCGGAGAGTTCCGGGGGTTTCCTT
7._ICS_1___
____CC__________________CCTT
8._ICS_1___
____CC__________________CCTT
9._ICS_1___
____CC__________________CCTT
10._ICS_1___
____CC__________________CCTT
11._ICS_1___
____CC__________________CCTT
12._ICS_1___
____CC__________________CCTT
13._PA_70_[PER]___
____CC__________________CCTT
14._ICS_1___
____CC__________________CCTT
15._ICS_1___
____CC__________________CCTT
16._ICS_1___
GTAA____AG____________CTCC__
17._ICS_5___
GTAA____AG____________CTCC__
18._MARPER_45___
____CC____________________TT
19._ICS_1___
____CC__________________CCTT
20._ICS_1___
__AA__GG________________CC__
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GTAACGTTCTAAGGAAAAAGTTGTGGCT
1._ICS_1___
GTAACGTTCTAAGGAAAAAGTTGTGGCT
2._ICS_1___
GTAACGTTCTAAGGAAAAAGTTGTGGCT
3._ICS_1___
GTAACGTTCTAAGGAAAAAGTTGTGGCT
4._ICS_1___
GTAACGTTCTAAGGAAAAAGTTGTGGCT
5._ICS_1___
GTAACGTTCTAAGGAAAAAGTTGTGGCT
6._PA_70_[PER]___
GTAACGTTCTAAGGAAAAAGTTGTGGCT
7._ICS_1___
____CG__CTAAGG__AAAGTTGT____
8._ICS_1___
____CG__CTAAGG__AAAGTTGT____
9._ICS_1___
____CG__CTAAGG__AAAGTTGT____
10._ICS_1___
____CG__CTAAGG__AAAGTTGT____
11._ICS_1___
____CG__CTAAGG__AAAGTTGT____
12._ICS_1___
____CG__CTAAGG__AAAGTTGT____
13._PA_70_[PER]___
____CG__CTAAGG__AAAGTTGT____
14._ICS_1___
____CG__CTAAGG__AAAGTTGT____
15._ICS_1___
____CG__CTAAGG__AAAGTTGT____
16._ICS_1___
GT__CGTTCTAA__AAAAAGTTGTGG__
17._ICS_5___
GT__CGTTCTAA__AAAAAGTTGTGG__
18._MARPER_45___
________CT________AG__GT____
19._ICS_1___
____CG__CTAAGG__AAAGTTGT____
20._ICS_1___
____CGTT__AA__AAAAAG________
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCGGTTACGGCCAAAACCGGCTAAACTT
1._ICS_1___
CCGGTTACGGCCAAAACCGGCTAAACTT
2._ICS_1___
CCGGTTACGGCCAAAACCGGCTAAACTT
3._ICS_1___
CCGGTTACGGCCAAAACCGGCTAAACTT
4._ICS_1___
CCGGTTACGGCCAAAACCGGCTAAACTT
5._ICS_1___
CCGGTTACGGCCAAAACCGGCTAAACTT
6._PA_70_[PER]___
CCGGTTACGGCCAAAACCGGCTAAACTT
7._ICS_1___
__GGTT__________CCGG______TT
8._ICS_1___
__GGTT__________CCGG______TT
9._ICS_1___
__GGTT__________CCGG______TT
10._ICS_1___
__GGTT__________CCGG______TT
11._ICS_1___
__GGTT__________CCGG______TT
12._ICS_1___
__GGTT__________CCGG______TT
13._PA_70_[PER]___
__GGTT__________CCGG______TT
14._ICS_1___
__GGTT__________CCGG______TT
15._ICS_1___
__GGTT__________CCGG______TT
16._ICS_1___
________________CCGG____ACTT
17._ICS_5___
________________CCGG____ACTT
18._MARPER_45___
__GG____________CCGG______TT
19._ICS_1___
__GGTT__________CCGG______CT
20._ICS_1___
CC________________CC________
 85 86 87 88 89 90 91 92 93 94     
_Input profile
TTTTTTAGCTCTTTTTAAGGX_XX_XX_XX_X
1._ICS_1___
TTTTTTAGCTCTTTTTAAGGX_XX_XX_XX_X
2._ICS_1___
TTTTTTAGCTCTTTTTAAGGX_XX_XX_XX_X
3._ICS_1___
TTTTTTAGCTCTTTTTAAGGX_XX_XX_XX_X
4._ICS_1___
TTTTTTAGCTCTTTTTAAGGX_XX_XX_XX_X
5._ICS_1___
TTTTTTAGCTCTTTTTAAGGX_XX_XX_XX_X
6._PA_70_[PER]___
TTTTTTAGCTCTTTTTAAGGX_XX_XX_XX_X
7._ICS_1___
TTTT__AG__CTTTTT____X_XX_XX_XX_X
8._ICS_1___
TTTT__AG__CTTTTT____X_XX_XX_XX_X
9._ICS_1___
TTTT__AG__CTTTTT____X_XX_XX_XX_X
10._ICS_1___
TTTT__AG__CTTTTT____X_XX_XX_XX_X
11._ICS_1___
TTTT__AG__CTTTTT____X_XX_XX_XX_X
12._ICS_1___
TTTT__AG__CTTTTT____X_XX_XX_XX_X
13._PA_70_[PER]___
TTTT__AG__CTTTTT____X_XX_XX_XX_X
14._ICS_1___
TTTT______CTTTTT____X_XX_XX_XX_X
15._ICS_1___
TTTT__AG__CTTTTT____X_XX_XX_XX_X
16._ICS_1___
______AG__CTTT______X_XX_XX_XX_X
17._ICS_5___
______AG__CTTT______X_XX_XX_XX_X
18._MARPER_45___
TT____AG__CT________X_XX_XX_XX_X
19._ICS_1___
TTCT__AG__CTTTTT____X_XX_XX_XX_X
20._ICS_1___
TT__________________X_XX_XX_XX_X

Input profile: ICS_1 NA

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

1._ICS_1 NA

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

2._ICS_1 NA

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._ICS_1 NA

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

4._ICS_1 NA

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

5._ICS_1 NA

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

6._PA_70_[PER] GC-04-053-3-17

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1 (roxo)
 Mars, 2018

7._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 8
 Dapeng Zhang, 2016

8._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 7
 Dapeng Zhang, 2016

9._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 6
 Dapeng Zhang, 2016

10._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 5
 Dapeng Zhang, 2016

11._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 3
 Dapeng Zhang, 2016

12._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 1
 Dapeng Zhang, 2016

13._PA_70_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4317 2 > FP
 Dapeng Zhang, 2016

14._ICS_1

identical
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block4
 Dapeng Zhang, 2016

15._ICS_1 RUQ_847

98.7 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._ICS_1 RUQ_847

96.3 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._ICS_5 RUQ_817

96.3 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

18._MARPER_45

96.2 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 251A
 Dapeng Zhang, 2014

19._ICS_1 RUQ_847

94.9 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

20._ICS_1 RUQ_847

94 %
25 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240