SNP Profiles matching ICS-1

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	AA	TT	AC	GG	AG	CC	CC	TT	CT	GG	CT	CC	CC
1._ICS_1	AA	AA	TT	AC	_	_	_	_	TT	CT	GG	_	CC	_
2._ICS_1	AA	AA	TT	AC	_	_	_	_	TT	CT	GG	_	CC	_
3._ICS_1	AA	AA	TT	AC	_	_	_	_	TT	CT	GG	_	CC	_
4._ICS_1	AA	AA	TT	AC	_	_	_	_	TT	CT	GG	_	CC	_
5._ICS_1	AA	AA	TT	AC	_	_	_	_	TT	CT	GG	_	CC	_
6._ICS_1	AA	AA	TT	AC	_	_	_	_	TT	CT	GG	_	CC	_
7._NA	AA	AA	TT	AC	GG	AG	CC	CC	TT	CT	GG	CT	CC	CC
8._NA	AA	AA	TT	AC	GG	AG	CC	CC	TT	CT	GG	CT	CC	CC
9._NA	AA	AA	TT	AC	GG	AG	CC	CC	TT	CT	GG	CT	CC	CC
10._NA	AA	AA	TT	AC	GG	AG	CC	CC	TT	CT	GG	CT	CC	CC
11._NA	AA	AA	TT	AC	GG	AG	CC	CC	TT	CT	GG	CT	CC	CC
12._PA_70_[PER]	AA	AA	TT	AC	_	_	_	_	TT	CT	GG	_	CC	_
13._GC-04-053-3-17	AA	AA	TT	AC	GG	AG	CC	CC	TT	CT	GG	CT	CC	CC
14._ICS_1	AA	AA	TT	AC	_	_	_	_	TT	CT	GG	_	CC	_
15._RUQ_847	AA	AA	TT	AC	_	_	_	_	TT	CT	GG	_	CC	_
16._RUQ_847	_	_	_	AC	_	_	_	_	TT	_	_	_	CC	_
17._RUQ_847	AA	AA	CT	AC	_	_	_	_	TT	CT	GG	_	CC	_
18._RUQ_847	_	_	TT	AA	_	_	CT	_	TT	_	_	CT	CC	_
19._RUQ_817	_	_	TT	AA	_	_	CT	_	TT	_	_	CT	CC	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AT	CC	AA	AA	GG	CG	GG	CT	AG	TT	AG	AT	AT	CG
1._ICS_1	_	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_
2._ICS_1	_	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_
3._ICS_1	_	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_
4._ICS_1	_	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_
5._ICS_1	_	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_
6._ICS_1	_	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_
7._NA	AT	CC	AA	AA	GG	CG	GG	CT	AG	TT	AG	AT	AT	CG
8._NA	AT	CC	AA	AA	GG	CG	GG	CT	AG	TT	AG	AT	AT	CG
9._NA	AT	CC	AA	AA	GG	CG	GG	CT	AG	TT	AG	AT	AT	CG
10._NA	AT	CC	AA	AA	GG	CG	GG	CT	AG	TT	AG	AT	AT	CG
11._NA	AT	CC	AA	AA	GG	CG	GG	CT	AG	TT	AG	AT	AT	CG
12._PA_70_[PER]	_	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_
13._GC-04-053-3-17	AT	CC	AA	AA	GG	CG	GG	CT	AG	TT	AG	AT	AT	CG
14._ICS_1	_	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_
15._RUQ_847	_	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_
16._RUQ_847	_	_	AG	_	_	CG	_	CT	_	_	AG	_	AT	CG
17._RUQ_847	_	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_
18._RUQ_847	_	_	_	_	_	CG	_	_	_	_	AG	_	AT	CG
19._RUQ_817	_	_	_	_	_	CG	_	_	_	_	AG	_	AT	CG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CG	AA	CT	GG	AA	CC	AA	AG	GT	GG	GT	AA	CT	AA
1._ICS_1	CG	AA	_	_	_	CC	_	AG	GT	_	_	AA	_	_
2._ICS_1	CG	AA	_	_	_	_	_	AG	GT	_	_	AA	_	_
3._ICS_1	CG	AA	_	_	_	CC	_	AG	GT	_	_	AA	_	_
4._ICS_1	CG	AA	_	_	_	CC	_	AG	GT	_	_	AA	_	_
5._ICS_1	CG	AA	_	_	_	CC	_	AG	GT	_	_	AA	_	_
6._ICS_1	CG	AA	_	_	_	CC	_	AG	GT	_	_	AA	_	_
7._NA	CG	AA	CT	GG	AA	CC	AA	AG	GT	GG	GT	AA	CT	AA
8._NA	CG	AA	CT	GG	AA	CC	AA	AG	GT	GG	GT	AA	CT	AA
9._NA	CG	AA	CT	GG	AA	CC	AA	AG	GT	GG	GT	AA	CT	AA
10._NA	CG	AA	CT	GG	AA	_	AA	AG	GT	GG	GT	AA	CT	AA
11._NA	CG	AA	CT	GG	AA	CC	AA	AG	GT	GG	GT	AA	CT	AA
12._PA_70_[PER]	CG	AA	_	_	_	CC	_	AG	GT	_	_	AA	_	_
13._GC-04-053-3-17	CG	AA	CT	GG	AA	CC	AA	AG	GT	GG	GT	AA	CT	AA
14._ICS_1	_	AA	_	_	_	CC	_	AG	GT	_	_	AA	_	_
15._RUQ_847	CG	AA	_	_	_	CC	_	AG	GT	_	_	AG	_	_
16._RUQ_847	CG	_	_	_	AA	CC	_	_	_	_	GT	_	CT	_
17._RUQ_847	CG	AA	_	_	_	CC	_	AG	GT	_	_	AG	_	_
18._RUQ_847	CG	_	_	_	AA	CC	AA	AG	GT	_	_	AA	CT	_
19._RUQ_817	CG	_	_	_	AA	CC	AA	AG	GT	_	_	AA	CT	_

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CC	GT	AA	CC	GG	AG	AG	TT	CC	GG	GG	GT	TT	CC
1._ICS_1	_	_	_	CC	_	_	_	_	_	_	_	_	_	CC
2._ICS_1	_	_	_	CC	_	_	_	_	_	_	_	_	_	CC
3._ICS_1	_	_	_	CC	_	_	_	_	_	_	_	_	_	CC
4._ICS_1	_	_	_	CC	_	_	_	_	_	_	_	_	_	CC
5._ICS_1	_	_	_	CC	_	_	_	_	_	_	_	_	_	CC
6._ICS_1	_	_	_	CC	_	_	_	_	_	_	_	_	_	CC
7._NA	CC	GT	AA	CC	GG	AG	AG	TT	CC	GG	GG	GT	TT	CC
8._NA	CC	GT	AA	CC	GG	AG	AG	TT	CC	GG	GG	GT	TT	CC
9._NA	CC	GT	AA	CC	GG	AG	AG	TT	CC	GG	GG	GT	TT	CC
10._NA	CC	GT	AA	CC	GG	AG	AG	TT	CC	GG	GG	GT	TT	CC
11._NA	CC	GT	AA	CC	GG	AG	AG	TT	CC	GG	GG	GT	TT	CC
12._PA_70_[PER]	_	_	_	CC	_	_	_	_	_	_	_	_	_	CC
13._GC-04-053-3-17	CC	GT	AA	CC	GG	AG	AG	TT	CC	GG	GG	GT	TT	CC
14._ICS_1	_	_	_	CC	_	_	_	_	_	_	_	_	_	CC
15._RUQ_847	_	_	_	CC	_	_	_	_	_	_	_	_	_	CC
16._RUQ_847	_	_	AA	_	GG	_	_	_	_	_	_	_	_	CC
17._RUQ_847	_	_	_	CC	_	_	_	_	_	_	_	_	_	CC
18._RUQ_847	_	GT	AA	_	_	AG	_	_	_	_	_	_	CT	CC
19._RUQ_817	_	GT	AA	_	_	AG	_	_	_	_	_	_	CT	CC

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	TT	GT	AA	CG	TT	CT	AA	GG	AA	AA	AG	TT	GT	GG
1._ICS_1	TT	_	_	CG	_	CT	AA	GG	_	AA	AG	TT	GT	_
2._ICS_1	TT	_	_	CG	_	CT	AA	GG	_	AA	AG	TT	GT	_
3._ICS_1	TT	_	_	CG	_	CT	AA	GG	_	AA	AG	TT	GT	_
4._ICS_1	TT	_	_	CG	_	CT	AA	GG	_	AA	AG	TT	GT	_
5._ICS_1	TT	_	_	CG	_	CT	AA	GG	_	AA	AG	TT	GT	_
6._ICS_1	TT	_	_	CG	_	CT	AA	GG	_	AA	AG	TT	GT	_
7._NA	TT	GT	AA	CG	TT	CT	AA	GG	AA	AA	AG	TT	GT	GG
8._NA	TT	GT	AA	CG	TT	CT	AA	GG	AA	AA	AG	TT	GT	GG
9._NA	TT	GT	AA	CG	TT	CT	AA	GG	AA	AA	AG	TT	GT	GG
10._NA	TT	GT	AA	CG	TT	CT	AA	GG	AA	AA	AG	TT	GT	GG
11._NA	TT	GT	AA	CG	TT	CT	AA	GG	AA	AA	AG	TT	GT	GG
12._PA_70_[PER]	TT	_	_	CG	_	CT	AA	GG	_	AA	AG	TT	GT	_
13._GC-04-053-3-17	TT	GT	AA	CG	TT	CT	AA	GG	AA	AA	AG	TT	GT	GG
14._ICS_1	TT	_	_	CG	_	CT	AA	GG	_	AA	AG	TT	GT	_
15._RUQ_847	TT	_	_	CG	_	CT	AA	GG	_	AA	AG	TT	GT	_
16._RUQ_847	_	_	_	CG	TT	_	AA	_	AA	AA	AG	_	_	_
17._RUQ_847	TT	_	_	CG	_	CT	AA	GG	_	AA	AG	TT	GT	_
18._RUQ_847	_	GT	-	CG	TT	CT	AA	_	AA	AA	AG	TT	GT	GG
19._RUQ_817	_	GT	-	CG	TT	CT	AA	_	AA	AA	AG	TT	GT	GG

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	CT	CC	GG	TT	AC	GG	CC	AA	AA	CC	GG	CT	AA	AC
1._ICS_1	_	_	GG	TT	_	_	_	_	_	CC	GG	_	_	_
2._ICS_1	_	_	GG	TT	_	_	_	_	_	CC	GG	_	_	_
3._ICS_1	_	_	GG	TT	_	_	_	_	_	CC	GG	_	_	_
4._ICS_1	_	_	GG	TT	_	_	_	_	_	CC	GG	_	_	_
5._ICS_1	_	_	GG	TT	_	_	_	_	_	CC	GG	_	_	_
6._ICS_1	_	_	GG	TT	_	_	_	_	_	CC	GG	_	_	_
7._NA	CT	CC	GG	TT	AC	GG	CC	AA	AA	CC	GG	CT	AA	AC
8._NA	CT	CC	GG	TT	AC	GG	CC	AA	AA	CC	GG	CT	AA	AC
9._NA	CT	CC	GG	TT	AC	GG	CC	AA	AA	CC	GG	CT	AA	AC
10._NA	CT	CC	GG	TT	AC	GG	CC	AA	AA	CC	GG	CT	AA	AC
11._NA	CT	CC	GG	TT	AC	GG	CC	AA	AA	CC	GG	CT	AA	AC
12._PA_70_[PER]	_	_	GG	TT	_	_	_	_	_	CC	GG	_	_	_
13._GC-04-053-3-17	CT	CC	GG	TT	AC	GG	CC	AA	AA	CC	GG	CT	AA	AC
14._ICS_1	_	_	GG	TT	_	_	_	_	_	CC	GG	_	_	_
15._RUQ_847	_	_	GG	TT	_	_	_	_	_	CC	GG	_	_	_
16._RUQ_847	_	CC	_	_	_	_	_	_	_	_	CC	_	_	_
17._RUQ_847	_	_	GG	TT	_	_	_	_	_	CC	GG	_	_	_
18._RUQ_847	_	_	_	_	_	_	_	_	_	CC	GG	_	_	AC
19._RUQ_817	_	_	_	_	_	_	_	_	_	CC	GG	_	_	AC

	85	86	87	88	89	90	91	92	93	94	95
_Input profile	TT	TT	TT	TT	AG	CT	CT	TT	TT	AA	GG	X_X	X_X	X_X
1._ICS_1	TT	TT	TT	_	AG	_	CT	TT	TT	_	_	X_X	X_X	X_X
2._ICS_1	TT	TT	TT	_	AG	_	CT	TT	TT	_	_	X_X	X_X	X_X
3._ICS_1	TT	TT	TT	_	AG	_	CT	TT	TT	_	_	X_X	X_X	X_X
4._ICS_1	TT	TT	TT	_	AG	_	CT	TT	TT	_	_	X_X	X_X	X_X
5._ICS_1	TT	TT	TT	_	AG	_	CT	TT	TT	_	_	X_X	X_X	X_X
6._ICS_1	TT	TT	TT	_	AG	_	CT	TT	TT	_	_	X_X	X_X	X_X
7._NA	TT	TT	TT	TT	AG	CT	CT	TT	TT	AA	GG	X_X	X_X	X_X
8._NA	TT	TT	TT	TT	AG	CT	CT	TT	TT	AA	GG	X_X	X_X	X_X
9._NA	TT	TT	TT	TT	AG	CT	CT	TT	TT	AA	GG	X_X	X_X	X_X
10._NA	TT	TT	TT	TT	AG	CT	CT	TT	TT	AA	GG	X_X	X_X	X_X
11._NA	TT	TT	TT	TT	AG	CT	CT	TT	TT	AA	GG	X_X	X_X	X_X
12._PA_70_[PER]	TT	TT	TT	_	AG	_	CT	TT	TT	_	_	X_X	X_X	X_X
13._GC-04-053-3-17	TT	TT	TT	TT	AG	CT	CT	TT	TT	AA	GG	X_X	X_X	X_X
14._ICS_1	TT	TT	TT	_	_	_	CT	TT	TT	_	_	X_X	X_X	X_X
15._RUQ_847	TT	TT	TT	_	AG	_	CT	TT	TT	_	_	X_X	X_X	X_X
16._RUQ_847	_	TT	_	_	_	_	_	_	_	_	_	X_X	X_X	X_X
17._RUQ_847	CT	TT	CT	_	AG	_	CT	TT	TT	_	_	X_X	X_X	X_X
18._RUQ_847	TT	_	_	_	AG	-	CT	TT	_	_	_	X_X	X_X	X_X
19._RUQ_817	TT	_	_	_	AG	-	CT	TT	_	_	_	X_X	X_X	X_X

Input profile: ICS_1 NA

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

1._ICS_1

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 8

Dapeng Zhang, 2016

2._ICS_1

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 7

Dapeng Zhang, 2016

3._ICS_1

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 6

Dapeng Zhang, 2016

4._ICS_1

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 5

Dapeng Zhang, 2016

5._ICS_1

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 3

Dapeng Zhang, 2016

6._ICS_1

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

7._ICS_1 NA

identical
95 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

8._ICS_1 NA

identical
95 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

9._ICS_1 NA

identical
95 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

10._ICS_1 NA

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

11._ICS_1 NA

identical
95 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

12._PA_70_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4317 2 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

13._PA_70_[PER] GC-04-053-3-17

identical
95 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1 (roxo)

14._ICS_1

identical
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block4

Dapeng Zhang, 2016

15._ICS_1 RUQ_847

98.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

16._ICS_1 RUQ_847

94.2 %
26 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: GBR207

Jocelyn De Wever et al., 2019

17._ICS_1 RUQ_847

95 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

18._ICS_1 RUQ_847

90.7 %
43 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

19._ICS_5 RUQ_817

90.7 %
43 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP860	18	TcSNP1062	19	TcSNP836	20	TcSNP878
21	TcSNP929	22	TcSNP413	23	TcSNP653	24	TcSNP1149	25	TcSNP174
26	TcSNP32	27	TcSNP372	28	TcSNP448	29	TcSNP872	30	TcSNP953
31	TcSNP1034	32	TcSNP1175	33	TcSNP1111	34	TcSNP577	35	TcSNP90
36	TcSNP998	37	TcSNP150	38	TcSNP28	39	TcSNP751	40	TcSNP1484
41	TcSNP602	42	TcSNP561	43	TcSNP894	44	TcSNP1063	45	TcSNP1126
46	TcSNP1270	47	TcSNP606	48	TcSNP329	49	TcSNP689	50	TcSNP944
51	TcSNP1242	52	TcSNP1383	53	TcSNP547	54	TcSNP776	55	TcSNP1309
56	TcSNP151	57	TcSNP1520	58	TcSNP799	59	TcSNP899	60	TcSNP226
61	TcSNP1439	62	TcSNP1442	63	TcSNP193	64	TcSNP25	65	TcSNP364
66	TcSNP144	67	TcSNP230	68	TcSNP560	69	TcSNP723	70	TcSNP731
71	TcSNP701	72	TcSNP1041	73	TcSNP645	74	TcSNP917	75	Tcm003s01336581
76	Tcm003s07402719	77	Tcm001s00947643	78	Tcm006s26664133	79	Tcm002s20575712	80	TcSNP529
81	TcSNP1458	82	TcSNP60	83	TcSNP430	84	TcSNP823	85	TcSNP619
86	TcSNP994	87	TcSNP1144	88	TcSNP1156	89	TcSNP469	90	TcSNP999
91	TcSNP242	92	TcSNP1253	93	TcSNP1414	94	TcSNP154	95	TcSNP240