SNP Profiles matching ICS 1

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 Key

 1234567891011121314
_Input profile
AAAATTACGGAGCCCCTTCTGGCTCCCC
1._NA
AAAATTACGGAGCCCCTTCTGGCTCCCC
2._NA
AAAATTACGGAGCCCCTTCTGGCTCCCC
3._NA
AAAATTACGGAGCCCCTTCTGGCTCCCC
4._NA
AAAATTACGGAGCCCCTTCTGGCTCCCC
5._GC-04-053-3-17
AAAATTACGGAGCCCCTTCTGGCTCCCC
6._NA
AAAATTACGGAGCCCCTTCTGGCTCCCC
7._ICS_1
AAAATTAC________TTCTGG__CC__
8._ICS_1
AAAATTAC________TTCTGG__CC__
9._ICS_1
AAAATTAC________TTCTGG__CC__
10._ICS_1
AAAATTAC________TTCTGG__CC__
11._ICS_1
AAAATTAC________TTCTGG__CC__
12._PA_70_[PER]
AAAATTAC________TTCTGG__CC__
13._ICS_1
AAAATTAC________TTCTGG__CC__
14._ICS_1
AAAATTAC________TTCTGG__CC__
15._RUQ_847
AAAATTAC________TTCTGG__CC__
16._RUQ_847
____TTAA____CT__TT____CTCC__
17._RUQ_817
____TTAA____CT__TT____CTCC__
18._MARPER_45
AAAATT____________CTGG__CC__
19._RUQ_847
AAAACTAC________TTCTGG__CC__
20._RUQ_847
______AC________TT______CC__
21._OC_61_[VEN]
AAAATTCC________TTCTGG__CC__
22._OC_61_[VEN]
AAAATTCC________TTCTGG__CC__
 1516171819202122232425262728
_Input profile
ATCCAAAAGGCGGGCTAGTTAGATATCG
1._NA
ATCCAAAAGGCGGGCTAGTTAGATATCG
2._NA
ATCCAAAAGGCGGGCTAGTTAGATATCG
3._NA
ATCCAAAAGGCGGGCTAGTTAGATATCG
4._NA
ATCCAAAAGGCGGGCTAGTTAGATATCG
5._GC-04-053-3-17
ATCCAAAAGGCGGGCTAGTTAGATATCG
6._NA
ATCCAAAAGGCGGGCTAGTTAGATATCG
7._ICS_1
______AA____GG________ATAT__
8._ICS_1
______AA____GG________ATAT__
9._ICS_1
______AA____GG________ATAT__
10._ICS_1
______AA____GG________ATAT__
11._ICS_1
______AA____GG________ATAT__
12._PA_70_[PER]
______AA____GG________ATAT__
13._ICS_1
______AA____GG________ATAT__
14._ICS_1
______AA____GG________ATAT__
15._RUQ_847
______AA____GG________ATAT__
16._RUQ_847
__________CG________AG__ATCG
17._RUQ_817
__________CG________AG__ATCG
18._MARPER_45
______AATT__GG________AT____
19._RUQ_847
______AA____GG________ATAT__
20._RUQ_847
____AG____CG__CT____AG__ATCG
21._OC_61_[VEN]
______AA____GG________TTAA__
22._OC_61_[VEN]
______AA____GG________TTAA__
 2930313233343536373839404142
_Input profile
CGAACTGGAACCAAAGGTGGGTAACTAA
1._NA
CGAACTGGAACCAAAGGTGGGTAACTAA
2._NA
CGAACTGGAACCAAAGGTGGGTAACTAA
3._NA
CGAACTGGAACCAAAGGTGGGTAACTAA
4._NA
CGAACTGGAACCAAAGGTGGGTAACTAA
5._GC-04-053-3-17
CGAACTGGAACCAAAGGTGGGTAACTAA
6._NA
CGAACTGGAA__AAAGGTGGGTAACTAA
7._ICS_1
CGAA______CC__AGGT____AA____
8._ICS_1
CGAA______CC__AGGT____AA____
9._ICS_1
CGAA______CC__AGGT____AA____
10._ICS_1
CGAA______CC__AGGT____AA____
11._ICS_1
CGAA______CC__AGGT____AA____
12._PA_70_[PER]
CGAA______CC__AGGT____AA____
13._ICS_1
CGAA__________AGGT____AA____
14._ICS_1
__AA______CC__AGGT____AA____
15._RUQ_847
CGAA______CC__AGGT____AG____
16._RUQ_847
CG______AACCAAAGGT____AACT__
17._RUQ_817
CG______AACCAAAGGT____AACT__
18._MARPER_45
__AA______CC__AGGT____AA____
19._RUQ_847
CGAA______CC__AGGT____AG____
20._RUQ_847
CG______AACC________GT__CT__
21._OC_61_[VEN]
CGAA______CC__AGTT____AA____
22._OC_61_[VEN]
CGAA______CC__AGTT____AA____
 4344454647484950515253545556
_Input profile
CCGTAACCGGAGAGTTCCGGGGGTTTCC
1._NA
CCGTAACCGGAGAGTTCCGGGGGTTTCC
2._NA
CCGTAACCGGAGAGTTCCGGGGGTTTCC
3._NA
CCGTAACCGGAGAGTTCCGGGGGTTTCC
4._NA
CCGTAACCGGAGAGTTCCGGGGGTTTCC
5._GC-04-053-3-17
CCGTAACCGGAGAGTTCCGGGGGTTTCC
6._NA
CCGTAACCGGAGAGTTCCGGGGGTTTCC
7._ICS_1
______CC__________________CC
8._ICS_1
______CC__________________CC
9._ICS_1
______CC__________________CC
10._ICS_1
______CC__________________CC
11._ICS_1
______CC__________________CC
12._PA_70_[PER]
______CC__________________CC
13._ICS_1
______CC__________________CC
14._ICS_1
______CC__________________CC
15._RUQ_847
______CC__________________CC
16._RUQ_847
__GTAA____AG____________CTCC
17._RUQ_817
__GTAA____AG____________CTCC
18._MARPER_45
______CC____________________
19._RUQ_847
______CC__________________CC
20._RUQ_847
____AA__GG________________CC
21._OC_61_[VEN]
______CC__________________CC
22._OC_61_[VEN]
______CC__________________CC
 5758596061626364656667686970
_Input profile
TTGTAACGTTCTAAGGAAAAAGTTGTGG
1._NA
TTGTAACGTTCTAAGGAAAAAGTTGTGG
2._NA
TTGTAACGTTCTAAGGAAAAAGTTGTGG
3._NA
TTGTAACGTTCTAAGGAAAAAGTTGTGG
4._NA
TTGTAACGTTCTAAGGAAAAAGTTGTGG
5._GC-04-053-3-17
TTGTAACGTTCTAAGGAAAAAGTTGTGG
6._NA
TTGTAACGTTCTAAGGAAAAAGTTGTGG
7._ICS_1
TT____CG__CTAAGG__AAAGTTGT__
8._ICS_1
TT____CG__CTAAGG__AAAGTTGT__
9._ICS_1
TT____CG__CTAAGG__AAAGTTGT__
10._ICS_1
TT____CG__CTAAGG__AAAGTTGT__
11._ICS_1
TT____CG__CTAAGG__AAAGTTGT__
12._PA_70_[PER]
TT____CG__CTAAGG__AAAGTTGT__
13._ICS_1
TT____CG__CTAAGG__AAAGTTGT__
14._ICS_1
TT____CG__CTAAGG__AAAGTTGT__
15._RUQ_847
TT____CG__CTAAGG__AAAGTTGT__
16._RUQ_847
__GT__CGTTCTAA__AAAAAGTTGTGG
17._RUQ_817
__GT__CGTTCTAA__AAAAAGTTGTGG
18._MARPER_45
TT________CT________AG__GT__
19._RUQ_847
TT____CG__CTAAGG__AAAGTTGT__
20._RUQ_847
______CGTT__AA__AAAAAG______
21._OC_61_[VEN]
TT____CG__CTAAGG__ACAGTTGG__
22._OC_61_[VEN]
TT____CG__CTAAGG__ACAGTTGG__
 7172737475767778798081828384
_Input profile
CTCCGGTTACGGCCAAAACCGGCTAAAC
1._NA
CTCCGGTTACGGCCAAAACCGGCTAAAC
2._NA
CTCCGGTTACGGCCAAAACCGGCTAAAC
3._NA
CTCCGGTTACGGCCAAAACCGGCTAAAC
4._NA
CTCCGGTTACGGCCAAAACCGGCTAAAC
5._GC-04-053-3-17
CTCCGGTTACGGCCAAAACCGGCTAAAC
6._NA
CTCCGGTTACGGCCAAAACCGGCTAAAC
7._ICS_1
____GGTT__________CCGG______
8._ICS_1
____GGTT__________CCGG______
9._ICS_1
____GGTT__________CCGG______
10._ICS_1
____GGTT__________CCGG______
11._ICS_1
____GGTT__________CCGG______
12._PA_70_[PER]
____GGTT__________CCGG______
13._ICS_1
____GGTT__________CCGG______
14._ICS_1
____GGTT__________CCGG______
15._RUQ_847
____GGTT__________CCGG______
16._RUQ_847
__________________CCGG____AC
17._RUQ_817
__________________CCGG____AC
18._MARPER_45
____GG____________CCGG______
19._RUQ_847
____GGTT__________CCGG______
20._RUQ_847
__CC________________CC______
21._OC_61_[VEN]
____GGTT__________CCGG______
22._OC_61_[VEN]
____GGTT__________CCGG______
 8586878889909192939495   
_Input profile
TTTTTTTTAGCTCTTTTTAAGGX_XX_XX_X
1._NA
TTTTTTTTAGCTCTTTTTAAGGX_XX_XX_X
2._NA
TTTTTTTTAGCTCTTTTTAAGGX_XX_XX_X
3._NA
TTTTTTTTAGCTCTTTTTAAGGX_XX_XX_X
4._NA
TTTTTTTTAGCTCTTTTTAAGGX_XX_XX_X
5._GC-04-053-3-17
TTTTTTTTAGCTCTTTTTAAGGX_XX_XX_X
6._NA
TTTTTTTTAGCTCTTTTTAAGGX_XX_XX_X
7._ICS_1
TTTTTT__AG__CTTTTT____X_XX_XX_X
8._ICS_1
TTTTTT__AG__CTTTTT____X_XX_XX_X
9._ICS_1
TTTTTT__AG__CTTTTT____X_XX_XX_X
10._ICS_1
TTTTTT__AG__CTTTTT____X_XX_XX_X
11._ICS_1
TTTTTT__AG__CTTTTT____X_XX_XX_X
12._PA_70_[PER]
TTTTTT__AG__CTTTTT____X_XX_XX_X
13._ICS_1
TTTTTT__AG__CTTTTT____X_XX_XX_X
14._ICS_1
TTTTTT______CTTTTT____X_XX_XX_X
15._RUQ_847
TTTTTT__AG__CTTTTT____X_XX_XX_X
16._RUQ_847
TT______AG__CTTT______X_XX_XX_X
17._RUQ_817
TT______AG__CTTT______X_XX_XX_X
18._MARPER_45
TTTT____AG__CT________X_XX_XX_X
19._RUQ_847
CTTTCT__AG__CTTTTT____X_XX_XX_X
20._RUQ_847
__TT__________________X_XX_XX_X
21._OC_61_[VEN]
TTTTTT__AA__CCTTTT____X_XX_XX_X
22._OC_61_[VEN]
TTTTTT__AA__CCTTTT____X_XX_XX_X

Input profile: ICS_1 NA

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

1._ICS_1 NA

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

2._ICS_1 NA

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._ICS_1 NA

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

4._ICS_1 NA

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

5._PA_70_[PER] GC-04-053-3-17

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1 (roxo)
 Mars, 2018

6._ICS_1 NA

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

7._ICS_1

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 8
 Dapeng Zhang, 2016

8._ICS_1

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 6
 Dapeng Zhang, 2016

9._ICS_1

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 5
 Dapeng Zhang, 2016

10._ICS_1

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 3
 Dapeng Zhang, 2016

11._ICS_1

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

12._PA_70_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4317 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

13._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 7
 Dapeng Zhang, 2016

14._ICS_1

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block4
 Dapeng Zhang, 2016

15._ICS_1 RUQ_847

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._ICS_1 RUQ_847

96.3 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._ICS_5 RUQ_817

96.3 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

18._MARPER_45

96.3 %
27 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 251A
 Dapeng Zhang, 2014

19._ICS_1 RUQ_847

95 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

20._ICS_1 RUQ_847

94.2 %
26 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

21._OC_61_[VEN]

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5139 1 > FP
 Dapeng Zhang, 2016

22._OC_61_[VEN]

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5139 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240