SNP Profiles matching PA 175 [PER]

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 Key

 1234567891011121314
_Input profile
AAACCTACGGGGCCCCCCCCGGTTCCTT
1._NA
AAACCTACGGGGCCCCCCCCGGTTCCTT
2._NA
AAACCTACGGGGCCCCCCCCGGTTCCTT
3._NA
AAACCTACGGGGCCCCCCCCGGTTCCTT
4._PA_175_[PER]
AAACCTAC________CCCCGG__CC__
5._PA_175_[PER]
AAACCTAC________CCCCGG__CC__
6._PA_175_[PER]
AAACCTAC________CCCCGG__CC__
7._PA_175_[PER]
AAACCTAC________CCCCGG__CC__
8._RUQ_37
AAACCTAC________CCCCGG__CC__
9._PA_175_[PER]
AAACCTAC________CCCCGG__CC__
10._RUQ_37
____CTAC____CT__CC____TTCC__
11._PA_175_[PER]
AAACCTAC________CCCCGG__CC__
12._NA
AAACCTCCGGGGCCCCCCCCGGTTCCTT
13._NA
AAACCTCCGGGGCCCCCCCCGGTTCCTT
14._NA
AAACCTCCGGGGCCCCCCCCGGTTCCTT
15._NA
AAACCTCCGGGGCCCCCCCCGGTTCCTT
16._NA
AAACCTCCGGGGCCCCCCCCGGTTCCTT
17._PA_56_[PER]
AAACCTCC________CCCCGG__CC__
18._PA_56_[PER]
AAACCTCC________CCCCGG__CC__
19._PA_56_[PER]
AAACCTCC________CCCCGG__CC__
20._PA_56_[PER]
AAACCTCC________CCCCGG__CC__
21._PA_56_[PER]
AAACCTCC________CCCCGG__CC__
22._RUQ_32
____CTCC____CT__CC____TTCC__
 1516171819202122232425262728
_Input profile
AACCAGCGCCCGCTAATTGGATAACCGG
1._NA
AACCAGCGCCCGCTAATTGGATAACCGG
2._NA
AACCAGCGCCCGCTAATTGGATAACCGG
3._NA
AACCAGCGCCCGCTAATTGGATAACCGG
4._PA_175_[PER]
____AG____CG________ATAA__GG
5._PA_175_[PER]
____AG____CG________ATAA__GG
6._PA_175_[PER]
____AG____CG________ATAA__GG
7._PA_175_[PER]
____AG____CG________ATAA__GG
8._RUQ_37
____AG____CG________ATAA__GG
9._PA_175_[PER]
____AG____CG________ATAA__GG
10._RUQ_37
________CC________GG__AACCGG
11._PA_175_[PER]
____AGTTCCCG________ATAA__GG
12._NA
AACCGGCGCCGGCCAATTGGAAAACCGG
13._NA
AACCGGCGCCGGCCAATTGGAAAACCGG
14._NA
AACCGGCGCCGGCCAATTGGAAAACCGG
15._NA
AACCGGCGCCGGCCAATTGGAAAACCGG
16._NA
AACCGGCGCCGGCCAATTGGAA__CCGG
17._PA_56_[PER]
____GG____GG________AAAA__GG
18._PA_56_[PER]
____GG____GG________AAAA__GG
19._PA_56_[PER]
____GG____GG________AAAA__GG
20._PA_56_[PER]
____GG____GG________AAAA__GG
21._PA_56_[PER]
____GG____GG________AA____GG
22._RUQ_32
________CC________GG__AACCGG
 2930313233343536373839404142
_Input profile
AATTGTGGCGCCAAGGTTGGTTGGCCGG
1._NA
AATTGTGGCGCCAAGGTTGGTTGGCCGG
2._NA
AATTGTGGCGCCAAGGTTGGTTGGCCGG
3._NA
AATTGTGGCGCCAAGGTTGGTTGGCCGG
4._PA_175_[PER]
AA______CG__AAGG__GG________
5._PA_175_[PER]
AA______CG__AAGG__GG________
6._PA_175_[PER]
AA______CG__AAGG__GG________
7._PA_175_[PER]
AA______CG__AAGG__GG________
8._RUQ_37
AA______CG__AAGG__GG________
9._PA_175_[PER]
AA______CG__AAGG__GG________
10._RUQ_37
______GGCGCCAAGG__GGTT____GG
11._PA_175_[PER]
AA______CG__AAGG__GG________
12._NA
AATTGTGGCGCCAGGGTTGGTTAGCCGG
13._NA
AATTGTGGCGCCAGGGTTGGTTAGCCGG
14._NA
AATTGTGGCGCCAGGGTTGGTTAGCCGG
15._NA
AATTGTGGCGCCAGGGTTGGTTAGCCGG
16._NA
AATTGTGGCGCCAGGGTTGGTTAGCCGG
17._PA_56_[PER]
AA______CG__AGGG__GG________
18._PA_56_[PER]
AA______CG__AGGG__GG________
19._PA_56_[PER]
AA______CG__AGGG__GG________
20._PA_56_[PER]
AA______CG__AGGG__GG________
21._PA_56_[PER]
AA______CG__AGGG__GG________
22._RUQ_32
______GGCGCCAGGG__GGTT____GG
 4344454647484950515253545556
_Input profile
TTCCAAGGAACCCCGGAGGGTTCCCCTT
1._NA
TTCCAAGGAACCCCGGAGGGTTCCCCTT
2._NA
TTCCAAGGAACCCCGGAGGGTTCCCCTT
3._NA
TTCCAAGGAACCCCGGAGGGTTCCCCTT
4._PA_175_[PER]
__CC__________________CCCC__
5._PA_175_[PER]
__CC__________________CCCC__
6._PA_175_[PER]
__CC__________________CCCC__
7._PA_175_[PER]
__CC__________________CCCC__
8._RUQ_37
__CC__________________CCCC__
9._PA_175_[PER]
__CC__________________CCCC__
10._RUQ_37
TT____GG____________CTCC__TT
11._PA_175_[PER]
__CC__________________CCCC__
12._NA
TTCCAAGGAACCCCGGAGGGTTCCCCTT
13._NA
TTCCAAGGAACCCCGGAGGGTTCCCCTT
14._NA
TTCCAAGGAACCCCGGAGGGTTCCCCTT
15._NA
TTCCAAGGAACCCCGGAGGGTTCCCCTT
16._NA
TTCCAAGGAACCCCGGAGGGTTCCCCTT
17._PA_56_[PER]
__CC__________________CCCC__
18._PA_56_[PER]
__CC__________________CCCC__
19._PA_56_[PER]
__CC__________________CCCC__
20._PA_56_[PER]
__CC__________________CCCC__
21._PA_56_[PER]
__CC__________________CCCC__
22._RUQ_32
TT____GG____________CTCC__TT
 5758596061626364656667686970
_Input profile
AGCCCTCTAAGGGGCCGGGTGGAGCTCC
1._NA
AGCCCTCTAAGGGGCCGGGTGGAGCTCC
2._NA
AGCCCTCTAAGGGGCCGGGTGGAGCTCC
3._NA
AGCCCTCTAAGGGGCCGGGTGGAGCTCC
4._PA_175_[PER]
__CC__CTAAGG__CCGGGTGG______
5._PA_175_[PER]
__CC__CTAAGG__CCGGGTGG______
6._PA_175_[PER]
__CC__CTAAGG__CCGGGTGG______
7._PA_175_[PER]
__CC__CTAAGG__CCGGGTGG______
8._RUQ_37
__CC__CTAAGG__CCGGGTGG______
9._PA_175_[PER]
__CC__CTAAGG__CCGGGTGG______
10._RUQ_37
__CCCTCTAA__GGCCGGGTGGAG____
11._PA_175_[PER]
__CC__CTAAGG__CCGGGT________
12._NA
GGCCCCCTAAGGGGCCAGGTGGAGCTCC
13._NA
GGCCCCCTAAGGGGCCAGGTGGAGCTCC
14._NA
GGCCCCCTAAGGGGCCAGGTGGAGCTCC
15._NA
GGCCCCCTAAGGGGCCAGGTGGAGCTCC
16._NA
GGCCCCCTAAGGGGCCAGGTGGAGCTCC
17._PA_56_[PER]
__CC__CTAAGG__CCAGGTGG______
18._PA_56_[PER]
__CC__CTAAGG__CCAGGTGG______
19._PA_56_[PER]
__CC__CTAAGG__CCAGGTGG______
20._PA_56_[PER]
__CC__CTAAGG__CCAGGTGG______
21._PA_56_[PER]
__CC__CTAAGG__CCAGGTGG______
22._RUQ_32
__CCCCCTAC__GGCCAGGTGGAG____
 7172737475767778798081828384
_Input profile
GGCTCCAGACACAGACCGCCATAATTTT
1._NA
GGCTCCAGACACAGACCGCCATAATTTT
2._NA
GGCTCCAGACACAGACCGCCATAATTTT
3._NA
GGCTCCAGACACAGACCGCCATAATTTT
4._PA_175_[PER]
GGCT__________ACCG______TTTT
5._PA_175_[PER]
GGCT__________ACCG______TTTT
6._PA_175_[PER]
GGCT__________ACCG______TTTT
7._PA_175_[PER]
GGCT__________ACCG______TTTT
8._RUQ_37
AACT__________ACCG______TTTT
9._PA_175_[PER]
AACT__________ACCG______TTTT
10._RUQ_37
______________ACCG____AATT__
11._PA_175_[PER]
AACT__________ACCG______TTTT
12._NA
GGCTACAGACAAAGACCGCCATAATTCT
13._NA
GGCTACAGACAAAGACCGCCATAATTCT
14._NA
GGCTACAGACAAAGACCGCCATAATTCT
15._NA
GGCTACAGACAAAGACCGCCATAATTCT
16._NA
GGCTACAGACAAAGACCGCCATAATTCT
17._PA_56_[PER]
GGCT__________ACCG______TTCT
18._PA_56_[PER]
GGCT__________ACCG______TTCT
19._PA_56_[PER]
GGCT__________ACCG______TTCT
20._PA_56_[PER]
GGCT__________ACCG______TTCT
21._PA_56_[PER]
GGCT__________ACCG______TTCT
22._RUQ_32
______________ACCG____AATT__
 858687888990919293     
_Input profile
CCTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
1._NA
CCTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
2._NA
CCTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
3._NA
CCTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
4._PA_175_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
5._PA_175_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
6._PA_175_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
7._PA_175_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
8._RUQ_37
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
9._PA_175_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
10._RUQ_37
____AACCCCTT______X_XX_XX_XX_XX_X
11._PA_175_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
12._NA
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
13._NA
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
14._NA
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
15._NA
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
16._NA
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
17._PA_56_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
18._PA_56_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
19._PA_56_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
20._PA_56_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
21._PA_56_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
22._RUQ_32
____AACCCCTT______X_XX_XX_XX_XX_X

Input profile: PA_175_[PER] NA

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

1._PA_175_[PER] NA

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

2._PA_175_[PER] NA

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

3._PA_175_[PER] NA

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

4._PA_175_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

5._PA_175_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 8
 Dapeng Zhang, 2016

6._PA_175_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 9
 Dapeng Zhang, 2016

7._PA_175_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 12
 Dapeng Zhang, 2016

8._PA_175_[PER] RUQ_37

97.5 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._PA_175_[PER]

97.5 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 738
 Dapeng Zhang, 2016

10._PA_175_[PER] RUQ_37

96.4 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._PA_175_[PER]

95.1 %
41 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B F473 T6
 Dapeng Zhang, 2014

12._PA_56_[PER] NA

92.5 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._PA_56_[PER] NA

92.5 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._PA_56_[PER] NA

92.5 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: Dead
 Mars, 2018

15._PA_56_[PER] NA

92.5 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: Dead
 Mars, 2018

16._PA_56_[PER] NA

92.4 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

17._PA_56_[PER]

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 2
 Dapeng Zhang, 2016

18._PA_56_[PER]

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 3
 Dapeng Zhang, 2016

19._PA_56_[PER]

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 4
 Dapeng Zhang, 2016

20._PA_56_[PER]

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 6
 Dapeng Zhang, 2016

21._PA_56_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

22._PA_56_[PER] RUQ_32

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240