SNP Profiles matching C SUL 7

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 Key

 1234567891011121314
_Input profile
AAACCCCCAGAACTTTCCCTGGTTTTTT
1._NA
AAACCCCCAGAACTTTCCCTGGTTTTTT
2._NA
AAACCCCCAGAACTTTCCCTGGTTTTTT
3._NA
AAACCCCCAGAACTTTCCCTGGTTTTTT
4._NA
AAACCCCCAGAACTTTCCCTGGTTTTTT
5._C_SUL_7
AAACCCCC________CCCTGG__TT__
6._C_SUL_7
AAACCCCC________CCCTGG__TT__
7._C_SUL_7
AAACCCCC________CCCTGG__TT__
8._C_SUL_7
AAACCCCC________CCCTGG__TT__
9._C_SUL_7
AAACCCCC________CCCTGG__TT__
10._C_SUL_7
AAACCCCC________CCCTGG__TT__
 1516171819202122232425262728
_Input profile
ATAAAAGGGGCGGGCCAATTGGAAAAGG
1._NA
ATAAAAGGGGCGGGCCAATTGGAAAAGG
2._NA
ATAAAAGGGGCGGGCCAATTGGAAAAGG
3._NA
ATAAAAGGGGCGGGCCAATTGGAAAAGG
4._NA
ATAAAAGGGGCGGGCCAATTGGAAAAGG
5._C_SUL_7
______GG____GG________AAAA__
6._C_SUL_7
______GG____GG________AAAA__
7._C_SUL_7
______GG____GG________AAAA__
8._C_SUL_7
______GG____GG________AAAA__
9._C_SUL_7
______GG____GG________AAAA__
10._C_SUL_7
______GG____GG________AAAA__
 2930313233343536373839404142
_Input profile
CGATTTTTAGCCCCAAGGGGTTAACCGG
1._NA
CGATTTTTAGCCCCAAGGGGTTAACCGG
2._NA
CGATTTTTAGCCCCAAGGGGTTAACCGG
3._NA
CGATTTTTAGCCCCAAGGGGTTAACCGG
4._NA
CGATTTTTAGCCCCAAGGGGTTAACCGG
5._C_SUL_7
CGAT______CC__AAGG____AA____
6._C_SUL_7
CGAT______CC__AAGG____AA____
7._C_SUL_7
CGAT______CC__AAGG____AA____
8._C_SUL_7
CGAT______CC__AAGG____AA____
9._C_SUL_7
CGAT______CC__AAGG____AA____
10._C_SUL_7
CGAT______CC__AAGG____AA____
 4344454647484950515253545556
_Input profile
CCGGTTTTAAGGAACCACGGAAGGTTTT
1._NA
CCGGTTTTAAGGAACCACGGAAGGTTTT
2._NA
CCGGTTTTAAGGAACCACGGAAGGTTTT
3._NA
CCGGTTTTAAGGAACCACGGAAGGTTTT
4._NA
CCGGTTTTAAGGAACCACGGAAGGTTTT
5._C_SUL_7
______TT__________________TT
6._C_SUL_7
______TT__________________TT
7._C_SUL_7
______TT__________________TT
8._C_SUL_7
______TT__________________TT
9._C_SUL_7
______TT__________________TT
10._C_SUL_7
______TT__________________TT
 5758596061626364656667686970
_Input profile
CCTTGGCGCCCTCCGGGGACAAGGGTAA
1._NA
CCTTGGCGCCCTCCGGGGACAAGGGTAA
2._NA
CCTTGGCGCCCTCCGGGGACAAGGGTAA
3._NA
CCTTGGCGCCCTCCGGGGACAAGGGTAA
4._NA
CCTTGGCGCCCTCCGGGGACAAGGGTAA
5._C_SUL_7
CC____CG__CTCCGG__ACAAGGGT__
6._C_SUL_7
CC____CG__CTCCGG__ACAAGGGT__
7._C_SUL_7
CC____CG__CTCCGG__ACAAGGGT__
8._C_SUL_7
CC____CG__CTCCGG__ACAAGGGT__
9._C_SUL_7
CC____CG__CTCCGG__ACAAGGGT__
10._C_SUL_7
CC____CG__CTCCGG__ACAAGGGT__
 7172737475767778798081828384
_Input profile
CCCCAACTCCGGCCCCGGACCCCCAAAA
1._NA
CCCCAACTCCGGCCCCGGACCCCCAAAA
2._NA
CCCCAACTCCGGCCCCGGACCCCCAAAA
3._NA
CCCCAACTCCGGCCCCGGACCCCCAAAA
4._NA
CCCCAA__CCGGCCCCGGACCCCCAAAA
5._C_SUL_7
____AACT__________ACCC______
6._C_SUL_7
____AACT__________ACCC______
7._C_SUL_7
____AACT__________ACCC______
8._C_SUL_7
____AACT__________ACCC______
9._C_SUL_7
____AA____________ACCC______
10._C_SUL_7
____AGCT__________ACCC______
 8586878889909192939495   
_Input profile
CCCCCCCCGGCCCTGGCCTTGGX_XX_XX_X
1._NA
CCCCCCCCGGCCCTGGCCTTGGX_XX_XX_X
2._NA
CCCCCCCCGGCCCTGGCCTTGGX_XX_XX_X
3._NA
CCCCCCCCGGCCCTGGCCTTGGX_XX_XX_X
4._NA
CC__CCCCGGCCCTGGCCTTGGX_XX_XX_X
5._C_SUL_7
CCCCCC__GG__CTGGCC____X_XX_XX_X
6._C_SUL_7
CCCCCC__GG__CTGGCC____X_XX_XX_X
7._C_SUL_7
CCCCCC__GG__CTGGCC____X_XX_XX_X
8._C_SUL_7
CCCCCC__GG__CTGGCC____X_XX_XX_X
9._C_SUL_7
CC__CC__GG__CTGGCC____X_XX_XX_X
10._C_SUL_7
CCCCCC__GG__CTGGCC____X_XX_XX_X

Input profile: C_SUL_7 NA

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

1._C_SUL_7 NA

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

2._C_SUL_7 NA

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

3._C_SUL_7 NA

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

4._C_SUL_7 NA

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

5._C_SUL_7

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8129 7
 Dapeng Zhang, 2016

6._C_SUL_7

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8129 6
 Dapeng Zhang, 2016

7._C_SUL_7

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8129 5
 Dapeng Zhang, 2016

8._C_SUL_7

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8129 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

9._C_SUL_7

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8129 3
 Dapeng Zhang, 2016

10._C_SUL_7

98.8 %
40 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P95 583
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240