SNP Profiles matching IMC 41

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 Key

 1234567891011121314
_Input profile
AAACCCACGGGGCTCCCCCCGGTTCCCT
1._GC-08-275-8-47
AAACCCACGGGGCTCCCCCCGGTTCCCT
2._GC-08-275-8-47
AAACCCACGGGGCTCCCCCCGGTTCCCT
3._GC-08-275-8-47
AAACCCACGGGGCTCCCCCCGGTTCCCT
4._GC-08-275-8-47
AAACCCACGGGGCTCCCCCCGGTTCCCT
5._IMC_41
AAACCCAC____CCCCGG_CC_
6._IMC_41
AAACCCAC____CCCCGG_CC_
7._IMC_41
AAACCCAC____CCCCGG_CC_
8._IMC_41
AAACCCAC____CCCCGG_CC_
9._IMC_41
AAACCCAC____CCCCGG_CC_
10._IMC_41
AA_CC_____CCCCGG_CC_
11._RUQ_1529
__CCAC__CC_CC__TTCC_
12._MARPER_42
AAACCC-____-CCGG_CC_
13._MO_9
AAACCTCC____CCCCGG_CC_
14._MO_9
AAACCTCC____CCCCGG_CC_
15._MO_9
AAACCTCC____CCCCGG_CC_
16._MO_9
AAACCTCC____CCCCGG_CC_
17._MO_9
AAACCTCC____CCCCGG_CC_
18._MO_9
AAACCTCC____CCCCGG_CC_
19._GC-05-071-2-22
AAACCTCCGGGGCCCCCCCCGGTTCCTT
20._GC-05-071-2-22
AAACCTCCGGGGCCCCCCCCGGTTCCTT
21._GC-05-119-3-21
AAACCTCCGGGGCCCCCCCCGGTTCCTT
22._GC-05-119-3-21
AAACCTCCGGGGCCCCCCCCGGTTCCTT
23._GC-05-119-3-21
AAACCTCCGGGGCCCCCCCCGGTTCCTT
 1516171819202122232425262728
_Input profile
AACCAAGGCGCCGGTTAATTGGAAAACC
1._GC-08-275-8-47
AACCAAGGCGCCGGTTAATTGGAAAACC
2._GC-08-275-8-47
AACCAAGGCGCCGGTTAATTGGAAAACC
3._GC-08-275-8-47
AACCAAGGCGCCGGTTAATTGGAAAACC
4._GC-08-275-8-47
AACCAAGGCG_GGTTAATTGGAAAACC
5._IMC_41
___GG__GG____AAAA_
6._IMC_41
___GG__GG____AAAA_
7._IMC_41
___GG__GG____AAAA_
8._IMC_41
___GG__GG____AAAA_
9._IMC_41
___GG__GG____AAAA_
10._IMC_41
___GG__GG____AAAA_
11._RUQ_1529
_____CC____GG_AACC
12._MARPER_42
___GGTT-GG____AA-_
13._MO_9
___GG__CG____AAAA_
14._MO_9
___GG__CG____AAAA_
15._MO_9
___GG__CG____AAAA_
16._MO_9
___GG__CG____AAAA_
17._MO_9
___GG__CG____AAAA_
18._MO_9
___GG__CG____AAAA_
19._GC-05-071-2-22
AACCAAGGGGCCCGTTAATTGGAAAACC
20._GC-05-071-2-22
AACCAAGGGGCCCGTTAATTGGAAAACC
21._GC-05-119-3-21
AACCAAGGGGCCCGTTAATTGGAAAACC
22._GC-05-119-3-21
AACCAAGGGGCCCGTTAATTGGAAAACC
23._GC-05-119-3-21
AACCAAGGGGCCCGTTAATTGGAAAACC
 2930313233343536373839404142
_Input profile
GGAATTTTAGGGCCAGGTGGTTGGTTGG
1._GC-08-275-8-47
GGAATTTTAGGGCCAGGTGGTTGGTTGG
2._GC-08-275-8-47
GGAATTTTAGGGCCAGGTGGTTGGTTGG
3._GC-08-275-8-47
GGAATTTTAGGGCCAGGTGGTTGGTTGG
4._GC-08-275-8-47
GGAATTTTAGGGCCAGGTGGTTGGTTGG
5._IMC_41
GGAA___GG_AGGT__GG__
6._IMC_41
GGAA___GG_AGGT__GG__
7._IMC_41
GGAA___GG_AGGT__GG__
8._IMC_41
GGAA___GG_AGGT__GG__
9._IMC_41
GGAA___GG_AGGT__GG__
10._IMC_41
GGAA___GG_AGGT__GG__
11._RUQ_1529
GG___AGGGCCAGGT__GGTT_
12._MARPER_42
-AA___GG_AGGT__GG__
13._MO_9
GGAA___GG_AGGT__GG__
14._MO_9
GGAA___GG_AGGT__GG__
15._MO_9
GGAA___GG_AGGT__GG__
16._MO_9
GGAA___GG_AGGT__GG__
17._MO_9
GGAA___GG_AGGT__GG__
18._MO_9
GGAA___GG_AGGT__GG__
19._GC-05-071-2-22
GGAATTTTAGGGCCAGGTGGGTGGTTGG
20._GC-05-071-2-22
GGAATTTTAGGGCCAGGTGGGTGGTTGG
21._GC-05-119-3-21
GGAATTTTAGGGCCAGGTGGGTGGTTGG
22._GC-05-119-3-21
GGAATTTTAGGGCCAGGTGGGTGGTTGG
23._GC-05-119-3-21
GGAATTTTAGGGCCAGGTGGGTGGTTGG
 4344454647484950515253545556
_Input profile
CCGGTTCCAAGGAACCCCGGAAGGCCCC
1._GC-08-275-8-47
CCGGTTCCAAGGAACCCCGGAAGGCCCC
2._GC-08-275-8-47
CCGGTTCCAAGGAACCCCGGAAGGCCCC
3._GC-08-275-8-47
CCGGTTCCAAGGAACCCCGGAAGGCCCC
4._GC-08-275-8-47
CCGGTTCCAAGGAACCCCGGAAGGCCCC
5._IMC_41
___CC________CCCC
6._IMC_41
___CC________CCCC
7._IMC_41
___CC________CCCC
8._IMC_41
___CC________CCCC
9._IMC_41
___CC________CCCC
10._IMC_41
___CC________CCCC
11._RUQ_1529
_GGTT__GG______CC_
12._MARPER_42
___CC________-CC
13._MO_9
___CC________CCCC
14._MO_9
___CC________CCCC
15._MO_9
___CC________CCCC
16._MO_9
___CC________CCCC
17._MO_9
___CC________CCCC
18._MO_9
___CC________CCCC
19._GC-05-071-2-22
CCGGTTCCAAGGAACCCCGGAGGGCCCC
20._GC-05-071-2-22
CCGGTTCCAAGGAACCCCGGAGGGCCCC
21._GC-05-119-3-21
CCGGTTCCAAGGAACCCCGGAGGGCCCC
22._GC-05-119-3-21
CCGGTTCCAAGGAACCCCGGAGGGCCCC
23._GC-05-119-3-21
CCGGTTCCAAGGAACCCCGGAGGGCCCC
 5758596061626364656667686970
_Input profile
TTAGCCCCCCAAGGGGACAAGTGGAGCC
1._GC-08-275-8-47
TTAGCCCCCCAAGGGGACAAGTGGAGCC
2._GC-08-275-8-47
TTAGCCCCCC_GGGGACAAGTGGAGCC
3._GC-08-275-8-47
TTAGCCCCCC_GGGGACAAGTGGAGCC
4._GC-08-275-8-47
TTAGCCCCCC_GGGGACAAGTGGAGCC
5._IMC_41
__CC_CCAAGG_ACAAGTGG__
6._IMC_41
__CC_CCAAGG_ACAAGTGG__
7._IMC_41
__CC_CC_GG_ACAAGTGG__
8._IMC_41
__CC_CC_GG_ACAAGTGG__
9._IMC_41
__CC_CC_GG_ACAAGTGG__
10._IMC_41
____CCACGG_ACAAGTGG__
11._RUQ_1529
TT-CCCCCCAC_GGACAAGTGGAG_
12._MARPER_42
__-_CC--_-AA-GG__
13._MO_9
__CC_CTAAGG_ACAAGTGG__
14._MO_9
__CC_CTAAGG_ACAAGTGG__
15._MO_9
__CC_CTAAGG_ACAAGTGG__
16._MO_9
__CC_CTAAGG_ACAAGTGG__
17._MO_9
__CC_CT_GG_ACAAGTGG__
18._MO_9
____CTACGG_ACAAGTGG__
19._GC-05-071-2-22
TT_CCCTCTAAGGGGACAAGTGGAGCT
20._GC-05-071-2-22
TTGGCCCTCTAAGGGGACAAGTGGAGCT
21._GC-05-119-3-21
TTGGCCCTCTAAGGGGACAAGTGGAGCT
22._GC-05-119-3-21
TTGGCCCTCTAAGGGGACAAGTGGAGCT
23._GC-05-119-3-21
TTGGCCCTCT_GGGGACAAGTGGAGCT
 7172737475767778798081828384
_Input profile
CCAACTACAACCACAGAACGCCTTAATT
1._GC-08-275-8-47
CCAACTACAACCACAGAACGCCTTAATT
2._GC-08-275-8-47
CCAACTACAACCACAGAACGCCTTAATT
3._GC-08-275-8-47
CCAACTACAACCACAGAACGCCTTAATT
4._GC-08-275-8-47
CCAACTACAACCAC_AACGCCTTAATT
5._IMC_41
_AACT_____AACG___TT
6._IMC_41
_AACT_____AACG___TT
7._IMC_41
_AACT_____AACG___TT
8._IMC_41
_AACT_____AACG___TT
9._IMC_41
_AACT_____AACG___TT
10._IMC_41
_AACT_____AACG___TT
11._RUQ_1529
________AACG__AATT
12._MARPER_42
_AA-_____AACG___TT
13._MO_9
_AACT_____CCCG___TT
14._MO_9
_AACT_____CCCG___TT
15._MO_9
_AACT_____CCCG___TT
16._MO_9
_AACT_____CCCG___TT
17._MO_9
_AACT_____CCCG___TT
18._MO_9
_AACT_____CCCG___TT
19._GC-05-071-2-22
CCAACTCCAGCCACGGCCCGCCTTAATT
20._GC-05-071-2-22
CCAACTCCAGCCACGGCCCGCCTTAATT
21._GC-05-119-3-21
CCAACTCCAGCCACGGCCCGCCTTAATT
22._GC-05-119-3-21
CCAACTCCAGCCACGGCCCGCCTTAATT
23._GC-05-119-3-21
CCAACTCCAGCCACGGCCCGCCTTAATT
 85868788899091929394    
_Input profile
CTCCCCAACCCCTTTTAAGGX_XX_XX_XX_X
1._GC-08-275-8-47
CTCCCCAACCCCTTTTAAGGX_XX_XX_XX_X
2._GC-08-275-8-47
CTCCCCAACCCCTTTTAAGGX_XX_XX_XX_X
3._GC-08-275-8-47
CTCCCCAACCCCTTTTAAGGX_XX_XX_XX_X
4._GC-08-275-8-47
CTCCCCAACCCCTTTTAAGGX_XX_XX_XX_X
5._IMC_41
CTCC_AA_CCTTTT__X_XX_XX_XX_X
6._IMC_41
CTCC_AA_CCTTTT__X_XX_XX_XX_X
7._IMC_41
CTCC_AA_CCTTTT__X_XX_XX_XX_X
8._IMC_41
CTCC_AA_CCTTTT__X_XX_XX_XX_X
9._IMC_41
CTCC_AA_CCTTTT__X_XX_XX_XX_X
10._IMC_41
CTCC_AA_CCTTTT__X_XX_XX_XX_X
11._RUQ_1529
___AACCCCTT___X_XX_XX_XX_X
12._MARPER_42
CT-_AA_CC--__X_XX_XX_XX_X
13._MO_9
CTCC_AA_CCTTTT__X_XX_XX_XX_X
14._MO_9
CTCC_AA_CCTTTT__X_XX_XX_XX_X
15._MO_9
CTCC_AA_CCTTTT__X_XX_XX_XX_X
16._MO_9
CTCC_AA_CCTTTT__X_XX_XX_XX_X
17._MO_9
CTCC_AA_CCTTTT__X_XX_XX_XX_X
18._MO_9
CTCC_AA_CCTTTT__X_XX_XX_XX_X
19._GC-05-071-2-22
CTCCCCAACTCCTTTTAAGGX_XX_XX_XX_X
20._GC-05-071-2-22
CTCCCCAACTCCTTTTAAGGX_XX_XX_XX_X
21._GC-05-119-3-21
CTCCCCAACTCCTTTTAAGGX_XX_XX_XX_X
22._GC-05-119-3-21
CTCCCCAACTCCTTTTAAGGX_XX_XX_XX_X
23._GC-05-119-3-21
CTCCCCAACTCCTTTTAAGGX_XX_XX_XX_X

Input profile: IMC_41 GC-08-275-8-47

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

1._IMC_41 GC-08-275-8-47

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

2._IMC_41 GC-08-275-8-47

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

3._IMC_41 GC-08-275-8-47

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

4._IMC_41 GC-08-275-8-47

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._IMC_41

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 5
 Dapeng Zhang, 2016

6._IMC_41

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 4
 Dapeng Zhang, 2016

7._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 3
 Dapeng Zhang, 2016

8._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 2
 Dapeng Zhang, 2016

9._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._IMC_41

98.6 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F418 T1
 Dapeng Zhang, 2016

11._MO_4 RUQ_1529

97.6 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

12._MARPER_42

96.3 %
27 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 713
 Dapeng Zhang, 2014

13._MO_9

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 4 > FP
 Dapeng Zhang, 2016

14._MO_9

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 2
 Dapeng Zhang, 2016

15._MO_9

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 1 > FP
 Dapeng Zhang, 2016

16._MO_9

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

17._MO_9

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 3 > FP
 Dapeng Zhang, 2016

18._MO_9

91 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D835
 Dapeng Zhang, 2016

19._MO_9 GC-05-071-2-22

90.9 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

20._MO_9 GC-05-071-2-22

90.4 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

21._MO_9 GC-05-119-3-21

90.4 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

22._MO_9 GC-05-119-3-21

90.4 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

23._MO_9 GC-05-119-3-21

90.3 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240