SNP Profiles matching IMC-41

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 Key

 1234567891011121314
_Input profile
AAACCCACGGGGCTCCCCCCGGTTCCCT
1._GC-08-275-8-47
AAACCCACGGGGCTCCCCCCGGTTCCCT
2._GC-08-275-8-47
AAACCCACGGGGCTCCCCCCGGTTCCCT
3._GC-08-275-8-47
AAACCCACGGGGCTCCCCCCGGTTCCCT
4._GC-08-275-8-47
AAACCCACGGGGCTCCCCCCGGTTCCCT
5._IMC_41
AAACCCAC________CCCCGG__CC__
6._IMC_41
AAACCCAC________CCCCGG__CC__
7._IMC_41
AAACCCAC________CCCCGG__CC__
8._IMC_41
AAACCCAC________CCCCGG__CC__
9._IMC_41
AAACCCAC________CCCCGG__CC__
10._IMC_41
AA__CC__________CCCCGG__CC__
11._RUQ_1529
____CCAC____CC__CC____TTCC__
12._MARPER_42
AAACCC____________CCGG__CC__
13._MO_9
AAACCTCC________CCCCGG__CC__
14._MO_9
AAACCTCC________CCCCGG__CC__
15._MO_9
AAACCTCC________CCCCGG__CC__
16._MO_9
AAACCTCC________CCCCGG__CC__
17._MO_9
AAACCTCC________CCCCGG__CC__
18._MO_9
AAACCTCC________CCCCGG__CC__
19._GC-05-071-2-22
AAACCTCCGGGGCCCCCCCCGGTTCCTT
20._GC-05-071-2-22
AAACCTCCGGGGCCCCCCCCGGTTCCTT
21._GC-05-119-3-21
AAACCTCCGGGGCCCCCCCCGGTTCCTT
22._GC-05-119-3-21
AAACCTCCGGGGCCCCCCCCGGTTCCTT
23._GC-05-119-3-21
AAACCTCCGGGGCCCCCCCCGGTTCCTT
 1516171819202122232425262728
_Input profile
AACCAAGGCGCCGGTTAATTGGAAAACC
1._GC-08-275-8-47
AACCAAGGCGCCGGTTAATTGGAAAACC
2._GC-08-275-8-47
AACCAAGGCGCCGGTTAATTGGAAAACC
3._GC-08-275-8-47
AACCAAGGCGCCGGTTAATTGGAAAACC
4._GC-08-275-8-47
AACCAAGGCG__GGTTAATTGGAAAACC
5._IMC_41
______GG____GG________AAAA__
6._IMC_41
______GG____GG________AAAA__
7._IMC_41
______GG____GG________AAAA__
8._IMC_41
______GG____GG________AAAA__
9._IMC_41
______GG____GG________AAAA__
10._IMC_41
______GG____GG________AAAA__
11._RUQ_1529
__________CC________GG__AACC
12._MARPER_42
______GGTT__GG________AA____
13._MO_9
______GG____CG________AAAA__
14._MO_9
______GG____CG________AAAA__
15._MO_9
______GG____CG________AAAA__
16._MO_9
______GG____CG________AAAA__
17._MO_9
______GG____CG________AAAA__
18._MO_9
______GG____CG________AAAA__
19._GC-05-071-2-22
AACCAAGGGGCCCGTTAATTGGAAAACC
20._GC-05-071-2-22
AACCAAGGGGCCCGTTAATTGGAAAACC
21._GC-05-119-3-21
AACCAAGGGGCCCGTTAATTGGAAAACC
22._GC-05-119-3-21
AACCAAGGGGCCCGTTAATTGGAAAACC
23._GC-05-119-3-21
AACCAAGGGGCCCGTTAATTGGAAAACC
 2930313233343536373839404142
_Input profile
GGAATTTTAGGGCCAGGTGGTTGGTTGG
1._GC-08-275-8-47
GGAATTTTAGGGCCAGGTGGTTGGTTGG
2._GC-08-275-8-47
GGAATTTTAGGGCCAGGTGGTTGGTTGG
3._GC-08-275-8-47
GGAATTTTAGGGCCAGGTGGTTGGTTGG
4._GC-08-275-8-47
GGAATTTTAGGGCCAGGTGGTTGGTTGG
5._IMC_41
GGAA______GG__AGGT____GG____
6._IMC_41
GGAA______GG__AGGT____GG____
7._IMC_41
GGAA______GG__AGGT____GG____
8._IMC_41
GGAA______GG__AGGT____GG____
9._IMC_41
GGAA______GG__AGGT____GG____
10._IMC_41
GGAA______GG__AGGT____GG____
11._RUQ_1529
GG______AGGGCCAGGT____GGTT__
12._MARPER_42
__AA______GG__AGGT____GG____
13._MO_9
GGAA______GG__AGGT____GG____
14._MO_9
GGAA______GG__AGGT____GG____
15._MO_9
GGAA______GG__AGGT____GG____
16._MO_9
GGAA______GG__AGGT____GG____
17._MO_9
GGAA______GG__AGGT____GG____
18._MO_9
GGAA______GG__AGGT____GG____
19._GC-05-071-2-22
GGAATTTTAGGGCCAGGTGGGTGGTTGG
20._GC-05-071-2-22
GGAATTTTAGGGCCAGGTGGGTGGTTGG
21._GC-05-119-3-21
GGAATTTTAGGGCCAGGTGGGTGGTTGG
22._GC-05-119-3-21
GGAATTTTAGGGCCAGGTGGGTGGTTGG
23._GC-05-119-3-21
GGAATTTTAGGGCCAGGTGGGTGGTTGG
 4344454647484950515253545556
_Input profile
CCGGTTCCAAGGAACCCCGGAAGGCCCC
1._GC-08-275-8-47
CCGGTTCCAAGGAACCCCGGAAGGCCCC
2._GC-08-275-8-47
CCGGTTCCAAGGAACCCCGGAAGGCCCC
3._GC-08-275-8-47
CCGGTTCCAAGGAACCCCGGAAGGCCCC
4._GC-08-275-8-47
CCGGTTCCAAGGAACCCCGGAAGGCCCC
5._IMC_41
______CC________________CCCC
6._IMC_41
______CC________________CCCC
7._IMC_41
______CC________________CCCC
8._IMC_41
______CC________________CCCC
9._IMC_41
______CC________________CCCC
10._IMC_41
______CC________________CCCC
11._RUQ_1529
__GGTT____GG____________CC__
12._MARPER_42
______CC__________________CC
13._MO_9
______CC________________CCCC
14._MO_9
______CC________________CCCC
15._MO_9
______CC________________CCCC
16._MO_9
______CC________________CCCC
17._MO_9
______CC________________CCCC
18._MO_9
______CC________________CCCC
19._GC-05-071-2-22
CCGGTTCCAAGGAACCCCGGAGGGCCCC
20._GC-05-071-2-22
CCGGTTCCAAGGAACCCCGGAGGGCCCC
21._GC-05-119-3-21
CCGGTTCCAAGGAACCCCGGAGGGCCCC
22._GC-05-119-3-21
CCGGTTCCAAGGAACCCCGGAGGGCCCC
23._GC-05-119-3-21
CCGGTTCCAAGGAACCCCGGAGGGCCCC
 5758596061626364656667686970
_Input profile
TTAGCCCCCCAAGGGGACAAGTGGAGCC
1._GC-08-275-8-47
TTAGCCCCCCAAGGGGACAAGTGGAGCC
2._GC-08-275-8-47
TTAGCCCCCC__GGGGACAAGTGGAGCC
3._GC-08-275-8-47
TTAGCCCCCC__GGGGACAAGTGGAGCC
4._GC-08-275-8-47
TTAGCCCCCC__GGGGACAAGTGGAGCC
5._IMC_41
____CC__CCAAGG__ACAAGTGG____
6._IMC_41
____CC__CCAAGG__ACAAGTGG____
7._IMC_41
____CC__CC__GG__ACAAGTGG____
8._IMC_41
____CC__CC__GG__ACAAGTGG____
9._IMC_41
____CC__CC__GG__ACAAGTGG____
10._IMC_41
________CCACGG__ACAAGTGG____
11._RUQ_1529
TT__CCCCCCAC__GGACAAGTGGAG__
12._MARPER_42
________CC________AA__GG____
13._MO_9
____CC__CTAAGG__ACAAGTGG____
14._MO_9
____CC__CTAAGG__ACAAGTGG____
15._MO_9
____CC__CTAAGG__ACAAGTGG____
16._MO_9
____CC__CTAAGG__ACAAGTGG____
17._MO_9
____CC__CT__GG__ACAAGTGG____
18._MO_9
________CTACGG__ACAAGTGG____
19._GC-05-071-2-22
TT__CCCTCTAAGGGGACAAGTGGAGCT
20._GC-05-071-2-22
TTGGCCCTCTAAGGGGACAAGTGGAGCT
21._GC-05-119-3-21
TTGGCCCTCTAAGGGGACAAGTGGAGCT
22._GC-05-119-3-21
TTGGCCCTCTAAGGGGACAAGTGGAGCT
23._GC-05-119-3-21
TTGGCCCTCT__GGGGACAAGTGGAGCT
 7172737475767778798081828384
_Input profile
CCAACTACAACCACAGAACGCCTTAATT
1._GC-08-275-8-47
CCAACTACAACCACAGAACGCCTTAATT
2._GC-08-275-8-47
CCAACTACAACCACAGAACGCCTTAATT
3._GC-08-275-8-47
CCAACTACAACCACAGAACGCCTTAATT
4._GC-08-275-8-47
CCAACTACAACCAC__AACGCCTTAATT
5._IMC_41
__AACT__________AACG______TT
6._IMC_41
__AACT__________AACG______TT
7._IMC_41
__AACT__________AACG______TT
8._IMC_41
__AACT__________AACG______TT
9._IMC_41
__AACT__________AACG______TT
10._IMC_41
__AACT__________AACG______TT
11._RUQ_1529
________________AACG____AATT
12._MARPER_42
__AA____________AACG______TT
13._MO_9
__AACT__________CCCG______TT
14._MO_9
__AACT__________CCCG______TT
15._MO_9
__AACT__________CCCG______TT
16._MO_9
__AACT__________CCCG______TT
17._MO_9
__AACT__________CCCG______TT
18._MO_9
__AACT__________CCCG______TT
19._GC-05-071-2-22
CCAACTCCAGCCACGGCCCGCCTTAATT
20._GC-05-071-2-22
CCAACTCCAGCCACGGCCCGCCTTAATT
21._GC-05-119-3-21
CCAACTCCAGCCACGGCCCGCCTTAATT
22._GC-05-119-3-21
CCAACTCCAGCCACGGCCCGCCTTAATT
23._GC-05-119-3-21
CCAACTCCAGCCACGGCCCGCCTTAATT
 85868788899091929394    
_Input profile
CTCCCCAACCCCTTTTAAGGX_XX_XX_XX_X
1._GC-08-275-8-47
CTCCCCAACCCCTTTTAAGGX_XX_XX_XX_X
2._GC-08-275-8-47
CTCCCCAACCCCTTTTAAGGX_XX_XX_XX_X
3._GC-08-275-8-47
CTCCCCAACCCCTTTTAAGGX_XX_XX_XX_X
4._GC-08-275-8-47
CTCCCCAACCCCTTTTAAGGX_XX_XX_XX_X
5._IMC_41
CTCC__AA__CCTTTT____X_XX_XX_XX_X
6._IMC_41
CTCC__AA__CCTTTT____X_XX_XX_XX_X
7._IMC_41
CTCC__AA__CCTTTT____X_XX_XX_XX_X
8._IMC_41
CTCC__AA__CCTTTT____X_XX_XX_XX_X
9._IMC_41
CTCC__AA__CCTTTT____X_XX_XX_XX_X
10._IMC_41
CTCC__AA__CCTTTT____X_XX_XX_XX_X
11._RUQ_1529
______AACCCCTT______X_XX_XX_XX_X
12._MARPER_42
CT____AA__CC________X_XX_XX_XX_X
13._MO_9
CTCC__AA__CCTTTT____X_XX_XX_XX_X
14._MO_9
CTCC__AA__CCTTTT____X_XX_XX_XX_X
15._MO_9
CTCC__AA__CCTTTT____X_XX_XX_XX_X
16._MO_9
CTCC__AA__CCTTTT____X_XX_XX_XX_X
17._MO_9
CTCC__AA__CCTTTT____X_XX_XX_XX_X
18._MO_9
CTCC__AA__CCTTTT____X_XX_XX_XX_X
19._GC-05-071-2-22
CTCCCCAACTCCTTTTAAGGX_XX_XX_XX_X
20._GC-05-071-2-22
CTCCCCAACTCCTTTTAAGGX_XX_XX_XX_X
21._GC-05-119-3-21
CTCCCCAACTCCTTTTAAGGX_XX_XX_XX_X
22._GC-05-119-3-21
CTCCCCAACTCCTTTTAAGGX_XX_XX_XX_X
23._GC-05-119-3-21
CTCCCCAACTCCTTTTAAGGX_XX_XX_XX_X

Input profile: IMC_41 GC-08-275-8-47

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

1._IMC_41 GC-08-275-8-47

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

2._IMC_41 GC-08-275-8-47

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

3._IMC_41 GC-08-275-8-47

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

4._IMC_41 GC-08-275-8-47

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._IMC_41

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 5
 Dapeng Zhang, 2016

6._IMC_41

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 4
 Dapeng Zhang, 2016

7._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 3
 Dapeng Zhang, 2016

8._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 2
 Dapeng Zhang, 2016

9._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._IMC_41

98.6 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F418 T1
 Dapeng Zhang, 2016

11._MO_4 RUQ_1529

97.6 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

12._MARPER_42

96.3 %
27 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 713
 Dapeng Zhang, 2014

13._MO_9

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 4 > FP
 Dapeng Zhang, 2016

14._MO_9

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 2
 Dapeng Zhang, 2016

15._MO_9

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 1 > FP
 Dapeng Zhang, 2016

16._MO_9

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

17._MO_9

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 3 > FP
 Dapeng Zhang, 2016

18._MO_9

91 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D835
 Dapeng Zhang, 2016

19._MO_9 GC-05-071-2-22

90.9 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

20._MO_9 GC-05-071-2-22

90.4 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

21._MO_9 GC-05-119-3-21

90.4 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

22._MO_9 GC-05-119-3-21

90.4 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

23._MO_9 GC-05-119-3-21

90.3 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240