SNP Profiles matching IMC-41

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 Key

 1234567891011121314
_Input profile
AAACCCACGGGGCTCCCCCCGGTTCCCT
1._GC-08-275-8-47
AAACCCACGGGGCTCCCCCCGGTTCCCT
2._GC-08-275-8-47
AAACCCACGGGGCTCCCCCCGGTTCCCT
3._GC-08-275-8-47
AAACCCACGGGGCTCCCCCCGGTTCCCT
4._GC-08-275-8-47
AAACCCACGGGGCTCCCCCCGGTTCCCT
5._IMC_41
AAACCCAC________CCCCGG__CC__
6._IMC_41
AAACCCAC________CCCCGG__CC__
7._IMC_41
AAACCCAC________CCCCGG__CC__
8._IMC_41
AAACCCAC________CCCCGG__CC__
9._IMC_41
AAACCCAC________CCCCGG__CC__
10._IMC_41
AA__CC__________CCCCGG__CC__
11._RUQ_1529
____CCAC____CC__CC____TTCC__
12._MARPER_42
AAACCC____________CCGG__CC__
13._MO_9
AAACCTCC________CCCCGG__CC__
14._MO_9
AAACCTCC________CCCCGG__CC__
15._MO_9
AAACCTCC________CCCCGG__CC__
16._MO_9
AAACCTCC________CCCCGG__CC__
17._MO_9
AAACCTCC________CCCCGG__CC__
18._MO_9
AAACCTCC________CCCCGG__CC__
19._RUQ_1642
____CCCC____CT__CC____TTCC__
20._RUQ_1642
____CCCC____CT__CC____TTCC__
21._GC-05-071-2-22
AAACCTCCGGGGCCCCCCCCGGTTCCTT
22._GC-05-071-2-22
AAACCTCCGGGGCCCCCCCCGGTTCCTT
23._GC-05-119-3-21
AAACCTCCGGGGCCCCCCCCGGTTCCTT
24._GC-05-119-3-21
AAACCTCCGGGGCCCCCCCCGGTTCCTT
25._GC-05-119-3-21
AAACCTCCGGGGCCCCCCCCGGTTCCTT
26._RUQ_1576
____CCCC____CT__CC____TTCC__
 1516171819202122232425262728
_Input profile
AACCAAGGCGCCGGTTAATTGGAAAACC
1._GC-08-275-8-47
AACCAAGGCGCCGGTTAATTGGAAAACC
2._GC-08-275-8-47
AACCAAGGCGCCGGTTAATTGGAAAACC
3._GC-08-275-8-47
AACCAAGGCGCCGGTTAATTGGAAAACC
4._GC-08-275-8-47
AACCAAGGCG__GGTTAATTGGAAAACC
5._IMC_41
______GG____GG________AAAA__
6._IMC_41
______GG____GG________AAAA__
7._IMC_41
______GG____GG________AAAA__
8._IMC_41
______GG____GG________AAAA__
9._IMC_41
______GG____GG________AAAA__
10._IMC_41
______GG____GG________AAAA__
11._RUQ_1529
__________CC________GG__AACC
12._MARPER_42
______GGTT__GG________AA____
13._MO_9
______GG____CG________AAAA__
14._MO_9
______GG____CG________AAAA__
15._MO_9
______GG____CG________AAAA__
16._MO_9
______GG____CG________AAAA__
17._MO_9
______GG____CG________AAAA__
18._MO_9
______GG____CG________AAAA__
19._RUQ_1642
__________CC________GG__AACC
20._RUQ_1642
__________CC________GG__AACC
21._GC-05-071-2-22
AACCAAGGGGCCCGTTAATTGGAAAACC
22._GC-05-071-2-22
AACCAAGGGGCCCGTTAATTGGAAAACC
23._GC-05-119-3-21
AACCAAGGGGCCCGTTAATTGGAAAACC
24._GC-05-119-3-21
AACCAAGGGGCCCGTTAATTGGAAAACC
25._GC-05-119-3-21
AACCAAGGGGCCCGTTAATTGGAAAACC
26._RUQ_1576
__________CC________GG__AACC
 2930313233343536373839404142
_Input profile
GGAATTTTAGGGCCAGGTGGTTGGTTGG
1._GC-08-275-8-47
GGAATTTTAGGGCCAGGTGGTTGGTTGG
2._GC-08-275-8-47
GGAATTTTAGGGCCAGGTGGTTGGTTGG
3._GC-08-275-8-47
GGAATTTTAGGGCCAGGTGGTTGGTTGG
4._GC-08-275-8-47
GGAATTTTAGGGCCAGGTGGTTGGTTGG
5._IMC_41
GGAA______GG__AGGT____GG____
6._IMC_41
GGAA______GG__AGGT____GG____
7._IMC_41
GGAA______GG__AGGT____GG____
8._IMC_41
GGAA______GG__AGGT____GG____
9._IMC_41
GGAA______GG__AGGT____GG____
10._IMC_41
GGAA______GG__AGGT____GG____
11._RUQ_1529
GG______AGGGCCAGGT____GGTT__
12._MARPER_42
__AA______GG__AGGT____GG____
13._MO_9
GGAA______GG__AGGT____GG____
14._MO_9
GGAA______GG__AGGT____GG____
15._MO_9
GGAA______GG__AGGT____GG____
16._MO_9
GGAA______GG__AGGT____GG____
17._MO_9
GGAA______GG__AGGT____GG____
18._MO_9
GGAA______GG__AGGT____GG____
19._RUQ_1642
GG______GGCGCCAGGG____GGTT__
20._RUQ_1642
GG______GGCGCCAGGG____GGTT__
21._GC-05-071-2-22
GGAATTTTAGGGCCAGGTGGGTGGTTGG
22._GC-05-071-2-22
GGAATTTTAGGGCCAGGTGGGTGGTTGG
23._GC-05-119-3-21
GGAATTTTAGGGCCAGGTGGGTGGTTGG
24._GC-05-119-3-21
GGAATTTTAGGGCCAGGTGGGTGGTTGG
25._GC-05-119-3-21
GGAATTTTAGGGCCAGGTGGGTGGTTGG
26._RUQ_1576
GG______GGCGCCAGGG____GGTT__
 4344454647484950515253545556
_Input profile
CCGGTTCCAAGGAACCCCGGAAGGCCCC
1._GC-08-275-8-47
CCGGTTCCAAGGAACCCCGGAAGGCCCC
2._GC-08-275-8-47
CCGGTTCCAAGGAACCCCGGAAGGCCCC
3._GC-08-275-8-47
CCGGTTCCAAGGAACCCCGGAAGGCCCC
4._GC-08-275-8-47
CCGGTTCCAAGGAACCCCGGAAGGCCCC
5._IMC_41
______CC________________CCCC
6._IMC_41
______CC________________CCCC
7._IMC_41
______CC________________CCCC
8._IMC_41
______CC________________CCCC
9._IMC_41
______CC________________CCCC
10._IMC_41
______CC________________CCCC
11._RUQ_1529
__GGTT____GG____________CC__
12._MARPER_42
______CC__________________CC
13._MO_9
______CC________________CCCC
14._MO_9
______CC________________CCCC
15._MO_9
______CC________________CCCC
16._MO_9
______CC________________CCCC
17._MO_9
______CC________________CCCC
18._MO_9
______CC________________CCCC
19._RUQ_1642
__GGTT____GG____________CC__
20._RUQ_1642
__GGTT____GG____________CC__
21._GC-05-071-2-22
CCGGTTCCAAGGAACCCCGGAGGGCCCC
22._GC-05-071-2-22
CCGGTTCCAAGGAACCCCGGAGGGCCCC
23._GC-05-119-3-21
CCGGTTCCAAGGAACCCCGGAGGGCCCC
24._GC-05-119-3-21
CCGGTTCCAAGGAACCCCGGAGGGCCCC
25._GC-05-119-3-21
CCGGTTCCAAGGAACCCCGGAGGGCCCC
26._RUQ_1576
__GGTT____GG____________CC__
 5758596061626364656667686970
_Input profile
TTAGCCCCCCGGGGACAAGTGGAGCCCC
1._GC-08-275-8-47
TTAGCCCCCCGGGGACAAGTGGAGCCCC
2._GC-08-275-8-47
TTAGCCCCCCGGGGACAAGTGGAGCCCC
3._GC-08-275-8-47
TTAGCCCCCCGGGGACAAGTGGAGCCCC
4._GC-08-275-8-47
TTAGCCCCCCGGGGACAAGTGGAGCCCC
5._IMC_41
____CC__CCGG__ACAAGTGG______
6._IMC_41
____CC__CCGG__ACAAGTGG______
7._IMC_41
____CC__CCGG__ACAAGTGG______
8._IMC_41
____CC__CCGG__ACAAGTGG______
9._IMC_41
____CC__CCGG__ACAAGTGG______
10._IMC_41
________CCGG__ACAAGTGG______
11._RUQ_1529
TT__CCCCCC__GGACAAGTGGAG____
12._MARPER_42
________CC______AA__GG______
13._MO_9
____CC__CTGG__ACAAGTGG______
14._MO_9
____CC__CTGG__ACAAGTGG______
15._MO_9
____CC__CTGG__ACAAGTGG______
16._MO_9
____CC__CTGG__ACAAGTGG______
17._MO_9
____CC__CTGG__ACAAGTGG______
18._MO_9
________CTGG__ACAAGTGG______
19._RUQ_1642
TT__CCCCCC__GGACGGGGGGAG____
20._RUQ_1642
TT__CCCCCC__GGACGGGGGGAG____
21._GC-05-071-2-22
TT__CCCTCTGGGGACAAGTGGAGCTCC
22._GC-05-071-2-22
TTGGCCCTCTGGGGACAAGTGGAGCTCC
23._GC-05-119-3-21
TTGGCCCTCTGGGGACAAGTGGAGCTCC
24._GC-05-119-3-21
TTGGCCCTCTGGGGACAAGTGGAGCTCC
25._GC-05-119-3-21
TTGGCCCTCTGGGGACAAGTGGAGCTCC
26._RUQ_1576
TTGGCCCCCC__GGACGGGGGGAG____
 7172737475767778798081828384
_Input profile
AACTACAACCACAGAACGCCTTAATTCT
1._GC-08-275-8-47
AACTACAACCACAGAACGCCTTAATTCT
2._GC-08-275-8-47
AACTACAACCACAGAACGCCTTAATTCT
3._GC-08-275-8-47
AACTACAACCACAGAACGCCTTAATTCT
4._GC-08-275-8-47
AACTACAACCAC__AACGCCTTAATTCT
5._IMC_41
AACT__________AACG______TTCT
6._IMC_41
AACT__________AACG______TTCT
7._IMC_41
AACT__________AACG______TTCT
8._IMC_41
AACT__________AACG______TTCT
9._IMC_41
AACT__________AACG______TTCT
10._IMC_41
AACT__________AACG______TTCT
11._RUQ_1529
______________AACG____AATT__
12._MARPER_42
AA____________AACG______TTCT
13._MO_9
AACT__________CCCG______TTCT
14._MO_9
AACT__________CCCG______TTCT
15._MO_9
AACT__________CCCG______TTCT
16._MO_9
AACT__________CCCG______TTCT
17._MO_9
AACT__________CCCG______TTCT
18._MO_9
AACT__________CCCG______TTCT
19._RUQ_1642
______________AACG____AATT__
20._RUQ_1642
______________AACG____AATT__
21._GC-05-071-2-22
AACTCCAGCCACGGCCCGCCTTAATTCT
22._GC-05-071-2-22
AACTCCAGCCACGGCCCGCCTTAATTCT
23._GC-05-119-3-21
AACTCCAGCCACGGCCCGCCTTAATTCT
24._GC-05-119-3-21
AACTCCAGCCACGGCCCGCCTTAATTCT
25._GC-05-119-3-21
AACTCCAGCCACGGCCCGCCTTAATTCT
26._RUQ_1576
______________AACG____AATT__
 858687888990919293     
_Input profile
CCCCAACCCCTTTTAAGGX_XX_XX_XX_XX_X
1._GC-08-275-8-47
CCCCAACCCCTTTTAAGGX_XX_XX_XX_XX_X
2._GC-08-275-8-47
CCCCAACCCCTTTTAAGGX_XX_XX_XX_XX_X
3._GC-08-275-8-47
CCCCAACCCCTTTTAAGGX_XX_XX_XX_XX_X
4._GC-08-275-8-47
CCCCAACCCCTTTTAAGGX_XX_XX_XX_XX_X
5._IMC_41
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
6._IMC_41
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
7._IMC_41
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
8._IMC_41
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
9._IMC_41
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
10._IMC_41
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
11._RUQ_1529
____AACCCCTT______X_XX_XX_XX_XX_X
12._MARPER_42
____AA__CC________X_XX_XX_XX_XX_X
13._MO_9
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
14._MO_9
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
15._MO_9
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
16._MO_9
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
17._MO_9
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
18._MO_9
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
19._RUQ_1642
____AACCCCTT______X_XX_XX_XX_XX_X
20._RUQ_1642
____AACCCCTT______X_XX_XX_XX_XX_X
21._GC-05-071-2-22
CCCCAACTCCTTTTAAGGX_XX_XX_XX_XX_X
22._GC-05-071-2-22
CCCCAACTCCTTTTAAGGX_XX_XX_XX_XX_X
23._GC-05-119-3-21
CCCCAACTCCTTTTAAGGX_XX_XX_XX_XX_X
24._GC-05-119-3-21
CCCCAACTCCTTTTAAGGX_XX_XX_XX_XX_X
25._GC-05-119-3-21
CCCCAACTCCTTTTAAGGX_XX_XX_XX_XX_X
26._RUQ_1576
____AACCCCTT______X_XX_XX_XX_XX_X

Input profile: IMC_41 GC-08-275-8-47

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

1._IMC_41 GC-08-275-8-47

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

2._IMC_41 GC-08-275-8-47

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

3._IMC_41 GC-08-275-8-47

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

4._IMC_41 GC-08-275-8-47

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 5
 Dapeng Zhang, 2016

6._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 4
 Dapeng Zhang, 2016

7._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 3
 Dapeng Zhang, 2016

8._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 2
 Dapeng Zhang, 2016

9._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._IMC_41

identical
36 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F418 T1
 Dapeng Zhang, 2016

11._MO_4 RUQ_1529

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

12._MARPER_42

96.3 %
27 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 713
 Dapeng Zhang, 2014

13._MO_9

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 4 > FP
 Dapeng Zhang, 2016

14._MO_9

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 3 > FP
 Dapeng Zhang, 2016

15._MO_9

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 2
 Dapeng Zhang, 2016

16._MO_9

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 1 > FP
 Dapeng Zhang, 2016

17._MO_9

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

18._MO_9

92.1 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D835
 Dapeng Zhang, 2016

19._PA_195_[PER] RUQ_1642

91.3 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

20._PA_195_[PER] RUQ_1642

91.3 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._MO_9 GC-05-071-2-22

90.8 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

22._MO_9 GC-05-071-2-22

90.3 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

23._MO_9 GC-05-119-3-21

90.3 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

24._MO_9 GC-05-119-3-21

90.3 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

25._MO_9 GC-05-119-3-21

90.3 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

26._PA_124_[PER] RUQ_1576

90.2 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240