SNP Profiles matching IMC-41

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 Key

 1234567891011121314
_Input profile
AAACCCACGGGGCTCCCCCCGGTTCCCT
1._GC-08-275-8-47
AAACCCACGGGGCTCCCCCCGGTTCCCT
2._GC-08-275-8-47
AAACCCACGGGGCTCCCCCCGGTTCCCT
3._GC-08-275-8-47
AAACCCACGGGGCTCCCCCCGGTTCCCT
4._GC-08-275-8-47
AAACCCACGGGGCTCCCCCCGGTTCCCT
5._IMC_41
AAACCCAC________CCCCGG__CC__
6._IMC_41
AAACCCAC________CCCCGG__CC__
7._IMC_41
AAACCCAC________CCCCGG__CC__
8._IMC_41
AAACCCAC________CCCCGG__CC__
9._IMC_41
AAACCCAC________CCCCGG__CC__
10._IMC_41
AA__CC__________CCCCGG__CC__
11._RUQ_1529
____CCAC____CC__CC____TTCC__
12._MARPER_42
AAACCC____________CCGG__CC__
13._MO_9
AAACCTCC________CCCCGG__CC__
14._MO_9
AAACCTCC________CCCCGG__CC__
15._MO_9
AAACCTCC________CCCCGG__CC__
16._MO_9
AAACCTCC________CCCCGG__CC__
17._MO_9
AAACCTCC________CCCCGG__CC__
18._MO_9
AAACCTCC________CCCCGG__CC__
19._GC-05-071-2-22
AAACCTCCGGGGCCCCCCCCGGTTCCTT
20._RUQ_1642
____CCCC____CT__CC____TTCC__
21._RUQ_1642
____CCCC____CT__CC____TTCC__
22._GC-05-071-2-22
AAACCTCCGGGGCCCCCCCCGGTTCCTT
23._GC-05-119-3-21
AAACCTCCGGGGCCCCCCCCGGTTCCTT
24._GC-05-119-3-21
AAACCTCCGGGGCCCCCCCCGGTTCCTT
25._GC-05-119-3-21
AAACCTCCGGGGCCCCCCCCGGTTCCTT
26._RUQ_1576
____CCCC____CT__CC____TTCC__
 1516171819202122232425262728
_Input profile
AACCAAGGCGGGTTAATTGGAAAACCGG
1._GC-08-275-8-47
AACCAAGGCGGGTTAATTGGAAAACCGG
2._GC-08-275-8-47
AACCAAGGCGGGTTAATTGGAAAACCGG
3._GC-08-275-8-47
AACCAAGGCGGGTTAATTGGAAAACCGG
4._GC-08-275-8-47
AACCAAGGCGGGTTAATTGGAAAACCGG
5._IMC_41
______GG__GG________AAAA__GG
6._IMC_41
______GG__GG________AAAA__GG
7._IMC_41
______GG__GG________AAAA__GG
8._IMC_41
______GG__GG________AAAA__GG
9._IMC_41
______GG__GG________AAAA__GG
10._IMC_41
______GG__GG________AAAA__GG
11._RUQ_1529
__________________GG__AACCGG
12._MARPER_42
______GGTTGG________AA______
13._MO_9
______GG__CG________AAAA__GG
14._MO_9
______GG__CG________AAAA__GG
15._MO_9
______GG__CG________AAAA__GG
16._MO_9
______GG__CG________AAAA__GG
17._MO_9
______GG__CG________AAAA__GG
18._MO_9
______GG__CG________AAAA__GG
19._GC-05-071-2-22
AACCAAGGGGCGTTAATTGGAAAACCGG
20._RUQ_1642
__________________GG__AACCGG
21._RUQ_1642
__________________GG__AACCGG
22._GC-05-071-2-22
AACCAAGGGGCGTTAATTGGAAAACCGG
23._GC-05-119-3-21
AACCAAGGGGCGTTAATTGGAAAACCGG
24._GC-05-119-3-21
AACCAAGGGGCGTTAATTGGAAAACCGG
25._GC-05-119-3-21
AACCAAGGGGCGTTAATTGGAAAACCGG
26._RUQ_1576
__________________GG__AACCGG
 2930313233343536373839404142
_Input profile
AATTTTAGGGCCAGGTGGTTGGTTGGCC
1._GC-08-275-8-47
AATTTTAGGGCCAGGTGGTTGGTTGGCC
2._GC-08-275-8-47
AATTTTAGGGCCAGGTGGTTGGTTGGCC
3._GC-08-275-8-47
AATTTTAGGGCCAGGTGGTTGGTTGGCC
4._GC-08-275-8-47
AATTTTAGGGCCAGGTGGTTGGTTGGCC
5._IMC_41
AA______GG__AGGT____GG______
6._IMC_41
AA______GG__AGGT____GG______
7._IMC_41
AA______GG__AGGT____GG______
8._IMC_41
AA______GG__AGGT____GG______
9._IMC_41
AA______GG__AGGT____GG______
10._IMC_41
AA______GG__AGGT____GG______
11._RUQ_1529
______AGGGCCAGGT____GGTT____
12._MARPER_42
AA______GG__AGGT____GG______
13._MO_9
AA______GG__AGGT____GG______
14._MO_9
AA______GG__AGGT____GG______
15._MO_9
AA______GG__AGGT____GG______
16._MO_9
AA______GG__AGGT____GG______
17._MO_9
AA______GG__AGGT____GG______
18._MO_9
AA______GG__AGGT____GG______
19._GC-05-071-2-22
AATTTTAGGGCCAGGTGGGTGGTTGGCC
20._RUQ_1642
______GGCGCCAGGG____GGTT____
21._RUQ_1642
______GGCGCCAGGG____GGTT____
22._GC-05-071-2-22
AATTTTAGGGCCAGGTGGGTGGTTGGCC
23._GC-05-119-3-21
AATTTTAGGGCCAGGTGGGTGGTTGGCC
24._GC-05-119-3-21
AATTTTAGGGCCAGGTGGGTGGTTGGCC
25._GC-05-119-3-21
AATTTTAGGGCCAGGTGGGTGGTTGGCC
26._RUQ_1576
______GGCGCCAGGG____GGTT____
 4344454647484950515253545556
_Input profile
GGTTCCAAGGAACCCCGGAAGGCCCCTT
1._GC-08-275-8-47
GGTTCCAAGGAACCCCGGAAGGCCCCTT
2._GC-08-275-8-47
GGTTCCAAGGAACCCCGGAAGGCCCCTT
3._GC-08-275-8-47
GGTTCCAAGGAACCCCGGAAGGCCCCTT
4._GC-08-275-8-47
GGTTCCAAGGAACCCCGGAAGGCCCCTT
5._IMC_41
____CC________________CCCC__
6._IMC_41
____CC________________CCCC__
7._IMC_41
____CC________________CCCC__
8._IMC_41
____CC________________CCCC__
9._IMC_41
____CC________________CCCC__
10._IMC_41
____CC________________CCCC__
11._RUQ_1529
GGTT____GG____________CC__TT
12._MARPER_42
____CC__________________CC__
13._MO_9
____CC________________CCCC__
14._MO_9
____CC________________CCCC__
15._MO_9
____CC________________CCCC__
16._MO_9
____CC________________CCCC__
17._MO_9
____CC________________CCCC__
18._MO_9
____CC________________CCCC__
19._GC-05-071-2-22
GGTTCCAAGGAACCCCGGAGGGCCCCTT
20._RUQ_1642
GGTT____GG____________CC__TT
21._RUQ_1642
GGTT____GG____________CC__TT
22._GC-05-071-2-22
GGTTCCAAGGAACCCCGGAGGGCCCCTT
23._GC-05-119-3-21
GGTTCCAAGGAACCCCGGAGGGCCCCTT
24._GC-05-119-3-21
GGTTCCAAGGAACCCCGGAGGGCCCCTT
25._GC-05-119-3-21
GGTTCCAAGGAACCCCGGAGGGCCCCTT
26._RUQ_1576
GGTT____GG____________CC__TT
 5758596061626364656667686970
_Input profile
AGCCCCCCGGGGACAAGTGGAGCCCCAA
1._GC-08-275-8-47
AGCCCCCCGGGGACAAGTGGAGCCCCAA
2._GC-08-275-8-47
AGCCCCCCGGGGACAAGTGGAGCCCCAA
3._GC-08-275-8-47
AGCCCCCCGGGGACAAGTGGAGCCCCAA
4._GC-08-275-8-47
AGCCCCCCGGGGACAAGTGGAGCCCCAA
5._IMC_41
__CC__CCGG__ACAAGTGG______AA
6._IMC_41
__CC__CCGG__ACAAGTGG______AA
7._IMC_41
__CC__CCGG__ACAAGTGG______AA
8._IMC_41
__CC__CCGG__ACAAGTGG______AA
9._IMC_41
__CC__CCGG__ACAAGTGG______AA
10._IMC_41
______CCGG__ACAAGTGG______AA
11._RUQ_1529
__CCCCCC__GGACAAGTGGAG______
12._MARPER_42
______CC______AA__GG______AA
13._MO_9
__CC__CTGG__ACAAGTGG______AA
14._MO_9
__CC__CTGG__ACAAGTGG______AA
15._MO_9
__CC__CTGG__ACAAGTGG______AA
16._MO_9
__CC__CTGG__ACAAGTGG______AA
17._MO_9
__CC__CTGG__ACAAGTGG______AA
18._MO_9
______CTGG__ACAAGTGG______AA
19._GC-05-071-2-22
__CCCTCTGGGGACAAGTGGAGCTCCAA
20._RUQ_1642
__CCCCCC__GGACGGGGGGAG______
21._RUQ_1642
__CCCCCC__GGACGGGGGGAG______
22._GC-05-071-2-22
GGCCCTCTGGGGACAAGTGGAGCTCCAA
23._GC-05-119-3-21
GGCCCTCTGGGGACAAGTGGAGCTCCAA
24._GC-05-119-3-21
GGCCCTCTGGGGACAAGTGGAGCTCCAA
25._GC-05-119-3-21
GGCCCTCTGGGGACAAGTGGAGCTCCAA
26._RUQ_1576
GGCCCCCC__GGACGGGGGGAG______
 7172737475767778798081828384
_Input profile
CTACAACCACAACGCCTTAATTCTCCCC
1._GC-08-275-8-47
CTACAACCACAACGCCTTAATTCTCCCC
2._GC-08-275-8-47
CTACAACCACAACGCCTTAATTCTCCCC
3._GC-08-275-8-47
CTACAACCACAACGCCTTAATTCTCCCC
4._GC-08-275-8-47
CTACAACCACAACGCCTTAATTCTCCCC
5._IMC_41
CT________AACG______TTCTCC__
6._IMC_41
CT________AACG______TTCTCC__
7._IMC_41
CT________AACG______TTCTCC__
8._IMC_41
CT________AACG______TTCTCC__
9._IMC_41
CT________AACG______TTCTCC__
10._IMC_41
CT________AACG______TTCTCC__
11._RUQ_1529
__________AACG____AATT______
12._MARPER_42
__________AACG______TTCT____
13._MO_9
CT________CCCG______TTCTCC__
14._MO_9
CT________CCCG______TTCTCC__
15._MO_9
CT________CCCG______TTCTCC__
16._MO_9
CT________CCCG______TTCTCC__
17._MO_9
CT________CCCG______TTCTCC__
18._MO_9
CT________CCCG______TTCTCC__
19._GC-05-071-2-22
CTCCAGCCACCCCGCCTTAATTCTCCCC
20._RUQ_1642
__________AACG____AATT______
21._RUQ_1642
__________AACG____AATT______
22._GC-05-071-2-22
CTCCAGCCACCCCGCCTTAATTCTCCCC
23._GC-05-119-3-21
CTCCAGCCACCCCGCCTTAATTCTCCCC
24._GC-05-119-3-21
CTCCAGCCACCCCGCCTTAATTCTCCCC
25._GC-05-119-3-21
CTCCAGCCACCCCGCCTTAATTCTCCCC
26._RUQ_1576
__________AACG____AATT______
 85868788899091       
_Input profile
AACCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
1._GC-08-275-8-47
AACCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
2._GC-08-275-8-47
AACCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
3._GC-08-275-8-47
AACCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
4._GC-08-275-8-47
AACCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
5._IMC_41
AA__CCTTTT____X_XX_XX_XX_XX_XX_XX_X
6._IMC_41
AA__CCTTTT____X_XX_XX_XX_XX_XX_XX_X
7._IMC_41
AA__CCTTTT____X_XX_XX_XX_XX_XX_XX_X
8._IMC_41
AA__CCTTTT____X_XX_XX_XX_XX_XX_XX_X
9._IMC_41
AA__CCTTTT____X_XX_XX_XX_XX_XX_XX_X
10._IMC_41
AA__CCTTTT____X_XX_XX_XX_XX_XX_XX_X
11._RUQ_1529
AACCCCTT______X_XX_XX_XX_XX_XX_XX_X
12._MARPER_42
AA__CC________X_XX_XX_XX_XX_XX_XX_X
13._MO_9
AA__CCTTTT____X_XX_XX_XX_XX_XX_XX_X
14._MO_9
AA__CCTTTT____X_XX_XX_XX_XX_XX_XX_X
15._MO_9
AA__CCTTTT____X_XX_XX_XX_XX_XX_XX_X
16._MO_9
AA__CCTTTT____X_XX_XX_XX_XX_XX_XX_X
17._MO_9
AA__CCTTTT____X_XX_XX_XX_XX_XX_XX_X
18._MO_9
AA__CCTTTT____X_XX_XX_XX_XX_XX_XX_X
19._GC-05-071-2-22
AACTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
20._RUQ_1642
AACCCCTT______X_XX_XX_XX_XX_XX_XX_X
21._RUQ_1642
AACCCCTT______X_XX_XX_XX_XX_XX_XX_X
22._GC-05-071-2-22
AACTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
23._GC-05-119-3-21
AACTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
24._GC-05-119-3-21
AACTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
25._GC-05-119-3-21
AACTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
26._RUQ_1576
AACCCCTT______X_XX_XX_XX_XX_XX_XX_X

Input profile: IMC_41 GC-08-275-8-47

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

1._IMC_41 GC-08-275-8-47

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

2._IMC_41 GC-08-275-8-47

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._IMC_41 GC-08-275-8-47

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

4._IMC_41 GC-08-275-8-47

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

5._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 5
 Dapeng Zhang, 2016

6._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 4
 Dapeng Zhang, 2016

7._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 3
 Dapeng Zhang, 2016

8._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 2
 Dapeng Zhang, 2016

9._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._IMC_41

identical
36 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F418 T1
 Dapeng Zhang, 2016

11._MO_4 RUQ_1529

98.7 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

12._MARPER_42

96.3 %
27 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 713
 Dapeng Zhang, 2014

13._MO_9

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 4 > FP
 Dapeng Zhang, 2016

14._MO_9

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 3 > FP
 Dapeng Zhang, 2016

15._MO_9

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 2
 Dapeng Zhang, 2016

16._MO_9

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 1 > FP
 Dapeng Zhang, 2016

17._MO_9

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

18._MO_9

92.1 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D835
 Dapeng Zhang, 2016

19._MO_9 GC-05-071-2-22

91.1 %
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

20._PA_195_[PER] RUQ_1642

91 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._PA_195_[PER] RUQ_1642

91 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

22._MO_9 GC-05-071-2-22

90.7 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

23._MO_9 GC-05-119-3-21

90.7 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

24._MO_9 GC-05-119-3-21

90.7 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

25._MO_9 GC-05-119-3-21

90.7 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

26._PA_124_[PER] RUQ_1576

90 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP25 62TcSNP364 63TcSNP144 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76TcSNP529 77TcSNP1458 78TcSNP60 79TcSNP430 80TcSNP823
81TcSNP619 82TcSNP994 83TcSNP1144 84TcSNP1156 85TcSNP469
86TcSNP999 87TcSNP242 88TcSNP1253 89TcSNP1414 90TcSNP154
91TcSNP240