SNP Profiles matching IMC 41

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 Key

 1234567891011121314
_Input profile
AAACCCACGGGGCTCCCCCCGGTTCCCT
1._GC-08-275-8-47
AAACCCACGGGGCTCCCCCCGGTTCCCT
2._GC-08-275-8-47
AAACCCACGGGGCTCCCCCCGGTTCCCT
3._GC-08-275-8-47
AAACCCACGGGGCTCCCCCCGGTTCCCT
4._GC-08-275-8-47
AAACCCACGGGGCTCCCCCCGGTTCCCT
5._IMC_41
AAACCCAC____CCCCGG_CC_
6._IMC_41
AAACCCAC____CCCCGG_CC_
7._IMC_41
AAACCCAC____CCCCGG_CC_
8._IMC_41
AAACCCAC____CCCCGG_CC_
9._IMC_41
AAACCCAC____CCCCGG_CC_
10._IMC_41
AA_CC_____CCCCGG_CC_
11._RUQ_1529
__CCAC__CC_CC__TTCC_
12._MARPER_42
AAACCC-____-CCGG_CC_
13._MO_9
AAACCTCC____CCCCGG_CC_
14._MO_9
AAACCTCC____CCCCGG_CC_
15._MO_9
AAACCTCC____CCCCGG_CC_
16._MO_9
AAACCTCC____CCCCGG_CC_
17._MO_9
AAACCTCC____CCCCGG_CC_
18._MO_9
AAACCTCC____CCCCGG_CC_
19._GC-05-071-2-22
AAACCTCCGGGGCCCCCCCCGGTTCCTT
20._RUQ_1642
__CCCC__CT_CC__TTCC_
21._RUQ_1642
__CCCC__CT_CC__TTCC_
22._GC-05-071-2-22
AAACCTCCGGGGCCCCCCCCGGTTCCTT
23._GC-05-119-3-21
AAACCTCCGGGGCCCCCCCCGGTTCCTT
24._GC-05-119-3-21
AAACCTCCGGGGCCCCCCCCGGTTCCTT
25._GC-05-119-3-21
AAACCTCCGGGGCCCCCCCCGGTTCCTT
26._RUQ_1576
__CCCC__CT_CC__TTCC_
 1516171819202122232425262728
_Input profile
AACCAAGGCGGGTTAATTGGAAAACCGG
1._GC-08-275-8-47
AACCAAGGCGGGTTAATTGGAAAACCGG
2._GC-08-275-8-47
AACCAAGGCGGGTTAATTGGAAAACCGG
3._GC-08-275-8-47
AACCAAGGCGGGTTAATTGGAAAACCGG
4._GC-08-275-8-47
AACCAAGGCGGGTTAATTGGAAAACCGG
5._IMC_41
___GG_GG____AAAA_GG
6._IMC_41
___GG_GG____AAAA_GG
7._IMC_41
___GG_GG____AAAA_GG
8._IMC_41
___GG_GG____AAAA_GG
9._IMC_41
___GG_GG____AAAA_GG
10._IMC_41
___GG_GG____AAAA_GG
11._RUQ_1529
_________GG_AACCGG
12._MARPER_42
___GGTTGG____AA-_-
13._MO_9
___GG_CG____AAAA_GG
14._MO_9
___GG_CG____AAAA_GG
15._MO_9
___GG_CG____AAAA_GG
16._MO_9
___GG_CG____AAAA_GG
17._MO_9
___GG_CG____AAAA_GG
18._MO_9
___GG_CG____AAAA_GG
19._GC-05-071-2-22
AACCAAGGGGCGTTAATTGGAAAACCGG
20._RUQ_1642
_________GG_AACCGG
21._RUQ_1642
_________GG_AACCGG
22._GC-05-071-2-22
AACCAAGGGGCGTTAATTGGAAAACCGG
23._GC-05-119-3-21
AACCAAGGGGCGTTAATTGGAAAACCGG
24._GC-05-119-3-21
AACCAAGGGGCGTTAATTGGAAAACCGG
25._GC-05-119-3-21
AACCAAGGGGCGTTAATTGGAAAACCGG
26._RUQ_1576
_________GG_AACCGG
 2930313233343536373839404142
_Input profile
AATTTTAGGGCCAGGTGGTTGGTTGGCC
1._GC-08-275-8-47
AATTTTAGGGCCAGGTGGTTGGTTGGCC
2._GC-08-275-8-47
AATTTTAGGGCCAGGTGGTTGGTTGGCC
3._GC-08-275-8-47
AATTTTAGGGCCAGGTGGTTGGTTGGCC
4._GC-08-275-8-47
AATTTTAGGGCCAGGTGGTTGGTTGGCC
5._IMC_41
AA___GG_AGGT__GG___
6._IMC_41
AA___GG_AGGT__GG___
7._IMC_41
AA___GG_AGGT__GG___
8._IMC_41
AA___GG_AGGT__GG___
9._IMC_41
AA___GG_AGGT__GG___
10._IMC_41
AA___GG_AGGT__GG___
11._RUQ_1529
___AGGGCCAGGT__GGTT__
12._MARPER_42
AA___GG_AGGT__GG___
13._MO_9
AA___GG_AGGT__GG___
14._MO_9
AA___GG_AGGT__GG___
15._MO_9
AA___GG_AGGT__GG___
16._MO_9
AA___GG_AGGT__GG___
17._MO_9
AA___GG_AGGT__GG___
18._MO_9
AA___GG_AGGT__GG___
19._GC-05-071-2-22
AATTTTAGGGCCAGGTGGGTGGTTGGCC
20._RUQ_1642
___GGCGCCAGGG__GGTT__
21._RUQ_1642
___GGCGCCAGGG__GGTT__
22._GC-05-071-2-22
AATTTTAGGGCCAGGTGGGTGGTTGGCC
23._GC-05-119-3-21
AATTTTAGGGCCAGGTGGGTGGTTGGCC
24._GC-05-119-3-21
AATTTTAGGGCCAGGTGGGTGGTTGGCC
25._GC-05-119-3-21
AATTTTAGGGCCAGGTGGGTGGTTGGCC
26._RUQ_1576
___GGCGCCAGGG__GGTT__
 4344454647484950515253545556
_Input profile
GGTTCCAAGGAACCCCGGAAGGCCCCTT
1._GC-08-275-8-47
GGTTCCAAGGAACCCCGGAAGGCCCCTT
2._GC-08-275-8-47
GGTTCCAAGGAACCCCGGAAGGCCCCTT
3._GC-08-275-8-47
GGTTCCAAGGAACCCCGGAAGGCCCCTT
4._GC-08-275-8-47
GGTTCCAAGGAACCCCGGAAGGCCCCTT
5._IMC_41
__CC________CCCC_
6._IMC_41
__CC________CCCC_
7._IMC_41
__CC________CCCC_
8._IMC_41
__CC________CCCC_
9._IMC_41
__CC________CCCC_
10._IMC_41
__CC________CCCC_
11._RUQ_1529
GGTT__GG______CC_TT
12._MARPER_42
__CC________-CC_
13._MO_9
__CC________CCCC_
14._MO_9
__CC________CCCC_
15._MO_9
__CC________CCCC_
16._MO_9
__CC________CCCC_
17._MO_9
__CC________CCCC_
18._MO_9
__CC________CCCC_
19._GC-05-071-2-22
GGTTCCAAGGAACCCCGGAGGGCCCCTT
20._RUQ_1642
GGTT__GG______CC_TT
21._RUQ_1642
GGTT__GG______CC_TT
22._GC-05-071-2-22
GGTTCCAAGGAACCCCGGAGGGCCCCTT
23._GC-05-119-3-21
GGTTCCAAGGAACCCCGGAGGGCCCCTT
24._GC-05-119-3-21
GGTTCCAAGGAACCCCGGAGGGCCCCTT
25._GC-05-119-3-21
GGTTCCAAGGAACCCCGGAGGGCCCCTT
26._RUQ_1576
GGTT__GG______CC_TT
 5758596061626364656667686970
_Input profile
AGCCCCCCGGGGACAAGTGGAGCCCCAA
1._GC-08-275-8-47
AGCCCCCCGGGGACAAGTGGAGCCCCAA
2._GC-08-275-8-47
AGCCCCCCGGGGACAAGTGGAGCCCCAA
3._GC-08-275-8-47
AGCCCCCCGGGGACAAGTGGAGCCCCAA
4._GC-08-275-8-47
AGCCCCCCGGGGACAAGTGGAGCCCCAA
5._IMC_41
_CC_CCGG_ACAAGTGG___AA
6._IMC_41
_CC_CCGG_ACAAGTGG___AA
7._IMC_41
_CC_CCGG_ACAAGTGG___AA
8._IMC_41
_CC_CCGG_ACAAGTGG___AA
9._IMC_41
_CC_CCGG_ACAAGTGG___AA
10._IMC_41
___CCGG_ACAAGTGG___AA
11._RUQ_1529
-CCCCCC_GGACAAGTGGAG___
12._MARPER_42
_-_CC-_-AA-GG___AA
13._MO_9
_CC_CTGG_ACAAGTGG___AA
14._MO_9
_CC_CTGG_ACAAGTGG___AA
15._MO_9
_CC_CTGG_ACAAGTGG___AA
16._MO_9
_CC_CTGG_ACAAGTGG___AA
17._MO_9
_CC_CTGG_ACAAGTGG___AA
18._MO_9
___CTGG_ACAAGTGG___AA
19._GC-05-071-2-22
_CCCTCTGGGGACAAGTGGAGCTCCAA
20._RUQ_1642
-CCCCCC_GGACGGGGGGAG___
21._RUQ_1642
-CCCCCC_GGACGGGGGGAG___
22._GC-05-071-2-22
GGCCCTCTGGGGACAAGTGGAGCTCCAA
23._GC-05-119-3-21
GGCCCTCTGGGGACAAGTGGAGCTCCAA
24._GC-05-119-3-21
GGCCCTCTGGGGACAAGTGGAGCTCCAA
25._GC-05-119-3-21
GGCCCTCTGGGGACAAGTGGAGCTCCAA
26._RUQ_1576
GGCCCCCC_GGACGGGGGGAG___
 7172737475767778798081828384
_Input profile
CTACAACCACAACGCCTTAATTCTCCCC
1._GC-08-275-8-47
CTACAACCACAACGCCTTAATTCTCCCC
2._GC-08-275-8-47
CTACAACCACAACGCCTTAATTCTCCCC
3._GC-08-275-8-47
CTACAACCACAACGCCTTAATTCTCCCC
4._GC-08-275-8-47
CTACAACCACAACGCCTTAATTCTCCCC
5._IMC_41
CT____AACG___TTCTCC_
6._IMC_41
CT____AACG___TTCTCC_
7._IMC_41
CT____AACG___TTCTCC_
8._IMC_41
CT____AACG___TTCTCC_
9._IMC_41
CT____AACG___TTCTCC_
10._IMC_41
CT____AACG___TTCTCC_
11._RUQ_1529
_____AACG__AATT___
12._MARPER_42
-____AACG___TTCT-_
13._MO_9
CT____CCCG___TTCTCC_
14._MO_9
CT____CCCG___TTCTCC_
15._MO_9
CT____CCCG___TTCTCC_
16._MO_9
CT____CCCG___TTCTCC_
17._MO_9
CT____CCCG___TTCTCC_
18._MO_9
CT____CCCG___TTCTCC_
19._GC-05-071-2-22
CTCCAGCCACCCCGCCTTAATTCTCCCC
20._RUQ_1642
_____AACG__AATT___
21._RUQ_1642
_____AACG__AATT___
22._GC-05-071-2-22
CTCCAGCCACCCCGCCTTAATTCTCCCC
23._GC-05-119-3-21
CTCCAGCCACCCCGCCTTAATTCTCCCC
24._GC-05-119-3-21
CTCCAGCCACCCCGCCTTAATTCTCCCC
25._GC-05-119-3-21
CTCCAGCCACCCCGCCTTAATTCTCCCC
26._RUQ_1576
_____AACG__AATT___
 85868788899091       
_Input profile
AACCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
1._GC-08-275-8-47
AACCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
2._GC-08-275-8-47
AACCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
3._GC-08-275-8-47
AACCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
4._GC-08-275-8-47
AACCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
5._IMC_41
AA_CCTTTT__X_XX_XX_XX_XX_XX_XX_X
6._IMC_41
AA_CCTTTT__X_XX_XX_XX_XX_XX_XX_X
7._IMC_41
AA_CCTTTT__X_XX_XX_XX_XX_XX_XX_X
8._IMC_41
AA_CCTTTT__X_XX_XX_XX_XX_XX_XX_X
9._IMC_41
AA_CCTTTT__X_XX_XX_XX_XX_XX_XX_X
10._IMC_41
AA_CCTTTT__X_XX_XX_XX_XX_XX_XX_X
11._RUQ_1529
AACCCCTT___X_XX_XX_XX_XX_XX_XX_X
12._MARPER_42
AA_CC--__X_XX_XX_XX_XX_XX_XX_X
13._MO_9
AA_CCTTTT__X_XX_XX_XX_XX_XX_XX_X
14._MO_9
AA_CCTTTT__X_XX_XX_XX_XX_XX_XX_X
15._MO_9
AA_CCTTTT__X_XX_XX_XX_XX_XX_XX_X
16._MO_9
AA_CCTTTT__X_XX_XX_XX_XX_XX_XX_X
17._MO_9
AA_CCTTTT__X_XX_XX_XX_XX_XX_XX_X
18._MO_9
AA_CCTTTT__X_XX_XX_XX_XX_XX_XX_X
19._GC-05-071-2-22
AACTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
20._RUQ_1642
AACCCCTT___X_XX_XX_XX_XX_XX_XX_X
21._RUQ_1642
AACCCCTT___X_XX_XX_XX_XX_XX_XX_X
22._GC-05-071-2-22
AACTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
23._GC-05-119-3-21
AACTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
24._GC-05-119-3-21
AACTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
25._GC-05-119-3-21
AACTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
26._RUQ_1576
AACCCCTT___X_XX_XX_XX_XX_XX_XX_X

Input profile: IMC_41 GC-08-275-8-47

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

1._IMC_41 GC-08-275-8-47

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

2._IMC_41 GC-08-275-8-47

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._IMC_41 GC-08-275-8-47

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

4._IMC_41 GC-08-275-8-47

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

5._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 5
 Dapeng Zhang, 2016

6._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 4
 Dapeng Zhang, 2016

7._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 3
 Dapeng Zhang, 2016

8._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 2
 Dapeng Zhang, 2016

9._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._IMC_41

identical
36 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F418 T1
 Dapeng Zhang, 2016

11._MO_4 RUQ_1529

98.7 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

12._MARPER_42

96.3 %
27 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 713
 Dapeng Zhang, 2014

13._MO_9

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 4 > FP
 Dapeng Zhang, 2016

14._MO_9

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 3 > FP
 Dapeng Zhang, 2016

15._MO_9

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 2
 Dapeng Zhang, 2016

16._MO_9

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 1 > FP
 Dapeng Zhang, 2016

17._MO_9

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

18._MO_9

92.1 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D835
 Dapeng Zhang, 2016

19._MO_9 GC-05-071-2-22

91.1 %
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

20._PA_195_[PER] RUQ_1642

91 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._PA_195_[PER] RUQ_1642

91 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

22._MO_9 GC-05-071-2-22

90.7 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

23._MO_9 GC-05-119-3-21

90.7 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

24._MO_9 GC-05-119-3-21

90.7 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

25._MO_9 GC-05-119-3-21

90.7 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

26._PA_124_[PER] RUQ_1576

90 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP25 62TcSNP364 63TcSNP144 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76TcSNP529 77TcSNP1458 78TcSNP60 79TcSNP430 80TcSNP823
81TcSNP619 82TcSNP994 83TcSNP1144 84TcSNP1156 85TcSNP469
86TcSNP999 87TcSNP242 88TcSNP1253 89TcSNP1414 90TcSNP154
91TcSNP240