SNP Profiles matching IMC 96

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 Key

 1234567891011121314
_Input profile
AAAACTAAAGGGCCCCCCCCGGTTCTTT
1._GC-08-255-8-23
AAAACTAAAGGGCCCCCCCCGGTTCTTT
2._GC-08-255-8-23
AAAACTAAAGGGCCCCCCCCGGTT__TT
3._GC-08-255-8-23
AAAACTAAAGGGCCCCCCCCGGTTCTTT
4._IMC_96
AAAACTAA________CCCCGG__CT__
5._IMC_96
AAAACTAA________CCCCGG__CT__
6._IMC_96
AAAACTAA________CCCCGG__CT__
7._IMC_96
AAAACTAA________CCCCGG______
8._GC-01-111-6-08
AA__TTAAGGGGCCCCCCCCGGTTCCTT
9._GC-01-111-6-08
AA__TTAAGGGGCCCCCCCCGGTTCCTT
10._GC-01-111-6-08
AA__TTAAGGGGCCCCCCCCGGTTCCTT
11._GC-01-111-6-08
AA__TTAAGGGGCCCCCCCCGGTTCCTT
12._GC-01-111-6-08
AA__TTAAGGGGCCCCCCCCGGTTCCTT
13._GC-01-111-6-08
AA__TTAAGGGGCCCCCCCCGGTTCCTT
14._GC-08-165-4-08
AA__CTAAGGGGCCCCCCCCGGTTCCTT
15._GC-08-165-4-08
AA__CTAAGGGGCCCCCCCCGGTTCCTT
16._GC-01-111-6-08
AA__TTAAGGGGCCCCCCCCGGTTCCTT
17._GC-08-165-4-08
AA__CTAAGGGGCCCCCCCCGGTTCCTT
18._GC-08-165-4-08
AA__CTAAGGGGCCCCCCCCGGTTCCTT
19._GC-01-111-6-08
AA__TTAAGGGGCCCCCCCCGGTTCCTT
 1516171819202122232425262728
_Input profile
AAAAAAGGGGCCGGCCAATTGGATAACG
1._GC-08-255-8-23
AAAAAAGGGGCCGGCCAATTGGATAACG
2._GC-08-255-8-23
AAAAAAGGGGCCGGCCAATTGGATAACG
3._GC-08-255-8-23
AAAAAAGGGG__GGCCAATTGGATAACG
4._IMC_96
______GG____GG________ATAA__
5._IMC_96
______GG____GG________ATAA__
6._IMC_96
______GG____GG________ATAA__
7._IMC_96
______GG____GG________ATAA__
8._GC-01-111-6-08
AAAA__GGGGCCGGCTAATTGGTTAACC
9._GC-01-111-6-08
AAAA__GGGGCCGGCTAATTGGTTAACC
10._GC-01-111-6-08
AAAA__GGGGCCGGCTAATTGGTTAACC
11._GC-01-111-6-08
AAAA__GGGGCCGGCTAATTGGTTAACC
12._GC-01-111-6-08
AAAA__GGGGCCGGCTAATTGGTTAACC
13._GC-01-111-6-08
AAAA__GGGGCCGGCTAATTGGTTAACC
14._GC-08-165-4-08
AAAA__GGGGCCGGCTAATTGGTTAACC
15._GC-08-165-4-08
AAAA__GGGGCCGGCTAATTGGTTAACC
16._GC-01-111-6-08
AAAA__GGGGCCGGCTAATTGGTTAACC
17._GC-08-165-4-08
AAAA__GGGGCCGGCTAATTGGTTAACC
18._GC-08-165-4-08
AAAA__GGGGCCGGCTAATTGGTTAACC
19._GC-01-111-6-08
AAAA__GGGGCCGGCTAATTGGTTAACC
 2930313233343536373839404142
_Input profile
CCAATTGTAGGGCCGGGGGTTTAACCGG
1._GC-08-255-8-23
CCAATTGTAGGGCCGGGGGTTTAACCGG
2._GC-08-255-8-23
CCAATTGTAGGGCCGGGGGTTTAACCGG
3._GC-08-255-8-23
CCAATTGTAGGGCCGGGGGTTTAACCGG
4._IMC_96
CCAA______GG__GGGG____AA____
5._IMC_96
CCAA______GG__GGGG____AA____
6._IMC_96
CCAA______GG__GGGG____AA____
7._IMC_96
CCAA______GG__GGGG____AA____
8._GC-01-111-6-08
CGAATTGGGGGGCCAGGGGGTTAACCGG
9._GC-01-111-6-08
CGAATTGGGGGGCCAGGGGGTTAACCGG
10._GC-01-111-6-08
CGAATTGGGGGGCCAGGGGGTTAACCGG
11._GC-01-111-6-08
CGAATTGGGGGGCCAGGGGGTTAACCGG
12._GC-01-111-6-08
CGAATTGGGGGGCCAGGGGGTTAACCGG
13._GC-01-111-6-08
CGAATTGGGGGGCCAGGGGGTTAACCGG
14._GC-08-165-4-08
GGAATTGGGGGGCCGGGGGGTTAACCGG
15._GC-08-165-4-08
GGAATTGGGGGGCCGGGGGGTTAACCGG
16._GC-01-111-6-08
CGAATTGGGGGGCCAGGGGGTTAACCGG
17._GC-08-165-4-08
GGAATTGGGGGGCCGGGGGGTTAACCGG
18._GC-08-165-4-08
GGAATTGGGGGG__GGGGGGTTAACCGG
19._GC-01-111-6-08
CGAATTGGGGGGCCAGGGGGTTAACCGG
 4344454647484950515253545556
_Input profile
CCGGTTTTAAGGAACCCCGGAGTTCCCC
1._GC-08-255-8-23
CCGGTTTTAAGGAACCCCGGAGTTCCCC
2._GC-08-255-8-23
CCGGTTTTAAGGAACCCCGGAGTTCCCC
3._GC-08-255-8-23
CCGGTTTTAAGGAACCCCGGAGTTCCCC
4._IMC_96
______TT________________CCCC
5._IMC_96
______TT________________CCCC
6._IMC_96
______TT________________CCCC
7._IMC_96
______TT________________CCCC
8._GC-01-111-6-08
CCGGTTCTAAGGAACCCCGGGGTTCCCC
9._GC-01-111-6-08
CCGGTTCTAAGGAACCCCGGGGTTCCCC
10._GC-01-111-6-08
CCGGTTCTAAGGAACCCCGGGGTTCCCC
11._GC-01-111-6-08
CCGGTTCTAAGGAACCCCGGGGTTCCCC
12._GC-01-111-6-08
CCGGTTCTAAGGAACCCCGGGGTTCCCC
13._GC-01-111-6-08
CCGGTTCTAAGGAACCCCGGGGTTCCCC
14._GC-08-165-4-08
CCGGTTTTAAGGAACCCCGGAATTCCCC
15._GC-08-165-4-08
CCGGTTTTAAGGAACCCCGGAATTCCCC
16._GC-01-111-6-08
CCGGTTCTAAGGAACCCCGGGGTT__CC
17._GC-08-165-4-08
CCGGTTTTAAGGAACCCCGGAATTCCCC
18._GC-08-165-4-08
CCGGTTTTAAGGAACCCCGGAATTCCCC
19._GC-01-111-6-08
CCGGTTCTAAGGAACCCCGGGGTTCTCC
 5758596061626364656667686970
_Input profile
TTGGCGCCTTAAGGGGACAGGGGGGGTT
1._GC-08-255-8-23
TTGGCGCCTTAAGGGGACAGGGGGGGTT
2._GC-08-255-8-23
TTGGCGCCTTAAGGGGACAGGGGGGGTT
3._GC-08-255-8-23
TTGGCGCCTTAAGGGGACAGGGGGGGTT
4._IMC_96
____CG__TTAAGG__ACAGGGGG____
5._IMC_96
____CG__TTAAGG__ACAGGGGG____
6._IMC_96
____CG__TTAAGG__ACAGGGGG____
7._IMC_96
____CG__TTAAGG__ACAGGGGG____
8._GC-01-111-6-08
TTGGCGCCTTAAGGGGACAGGTGGGGTT
9._GC-01-111-6-08
TTGGCGCCTTAAGGGGACAGGTGGGGTT
10._GC-01-111-6-08
TTGGCGCCTTAAGGGGACAGGTGGGGTT
11._GC-01-111-6-08
TTGGCGCCTTAAGGGGACAGGTGGGGTT
12._GC-01-111-6-08
TTGGCGCCTTAAGGGGACAGGTGGGGTT
13._GC-01-111-6-08
TTGGCGCCTTAAGGGGACAGGTGGGGTT
14._GC-08-165-4-08
TTGGCCCCTTAAGGGGCCAGGGGGGGTT
15._GC-08-165-4-08
TTGGCCCCTTAAGGGGCCAGGGGGGGTT
16._GC-01-111-6-08
TTGGCGCCTTAAGGGGACAGGTGGGGTT
17._GC-08-165-4-08
TTGGCCCCTTAAGGGGCCAGGGGGGGTT
18._GC-08-165-4-08
TTGGCCCCTTAAGGGGCCAGGGGGGGTT
19._GC-01-111-6-08
TTGGCGCCTTAAGGGGACAGGTGGGGTT
 7172737475767778798081828384
_Input profile
CCAACTAAAACCACAACCCGCCAACCCC
1._GC-08-255-8-23
CCAACTAAAACCACAACCCGCCAACCCC
2._GC-08-255-8-23
CCAACTAAAACCACAACCCGCCAACCCC
3._GC-08-255-8-23
CCAACTAAAACCACAACCCGCCAACCCC
4._IMC_96
__AACT__________CCCG______CC
5._IMC_96
__AACT__________CCCG______CC
6._IMC_96
__AACT__________CCCG______CC
7._IMC_96
__AACT__________CCCG______CC
8._GC-01-111-6-08
CCAACTAAAACCACAACCCGCCAACCCC
9._GC-01-111-6-08
CCAACTAAAACCACAACCCGCCAACCCC
10._GC-01-111-6-08
CCAACTAAAACCACAACCCGCCAACCCC
11._GC-01-111-6-08
CCAACTAAAACCACAACCCGCCAACCCC
12._GC-01-111-6-08
CCAACTAAAACCACAACCCGCCAACCCC
13._GC-01-111-6-08
CCAACTAAAACCACAACCCGCCAACCCC
14._GC-08-165-4-08
CCAACCAAAACCACAACCGGCCAACCCC
15._GC-08-165-4-08
CCAACCAAAACCACAACCGGCCAACCCC
16._GC-01-111-6-08
CCAACTAAAACCACAACCCGCCAACCCC
17._GC-08-165-4-08
CCAACCAAAACCACAACCGGCC__CCCC
18._GC-08-165-4-08
CCAACCAAAACCACAACCGGCCAACCCC
19._GC-01-111-6-08
CCAACTAA__CCACAACCCGCCAACCCC
 85868788899091929394    
_Input profile
TTCCCTAACCCCGTTTTTGGX_XX_XX_XX_X
1._GC-08-255-8-23
TTCCCTAACCCCGTTTTTGGX_XX_XX_XX_X
2._GC-08-255-8-23
TTCCCTAACCCCGTTTTTGGX_XX_XX_XX_X
3._GC-08-255-8-23
TTCCCTAACCCCGTTTTTGGX_XX_XX_XX_X
4._IMC_96
TTCC__AA__CCGTTT____X_XX_XX_XX_X
5._IMC_96
TTCC__AA__CCGTTT____X_XX_XX_XX_X
6._IMC_96
TTCC__AA__CCGTTT____X_XX_XX_XX_X
7._IMC_96
TTCC__AA__CCGTTT____X_XX_XX_XX_X
8._GC-01-111-6-08
TTCCTTAACCCTTTTTTTGGX_XX_XX_XX_X
9._GC-01-111-6-08
TTCCTTAACCCTTTTTTTGGX_XX_XX_XX_X
10._GC-01-111-6-08
TTCCTTAACCCTTTTTTTGGX_XX_XX_XX_X
11._GC-01-111-6-08
TTCCTTAACCCTTTTTTTGGX_XX_XX_XX_X
12._GC-01-111-6-08
TTCCTTAACCCTTTTTTTGGX_XX_XX_XX_X
13._GC-01-111-6-08
TTCCTTAACCCTTTTTTTGGX_XX_XX_XX_X
14._GC-08-165-4-08
TTCCTTAACCCCTTTTTTGGX_XX_XX_XX_X
15._GC-08-165-4-08
TTCCTTAACCCCTTTTTTGGX_XX_XX_XX_X
16._GC-01-111-6-08
TTCCTTAACCCTTTTTTTGGX_XX_XX_XX_X
17._GC-08-165-4-08
TTCCTTAACCCCTTTTTTGGX_XX_XX_XX_X
18._GC-08-165-4-08
TTCCTTAACCCCTTTTTTGGX_XX_XX_XX_X
19._GC-01-111-6-08
TTCCTTAACCCTTTTTTTGGX_XX_XX_XX_X

Input profile: IMC_96 GC-08-255-8-23

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

1._IMC_96 GC-08-255-8-23

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

2._IMC_96 GC-08-255-8-23

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

3._IMC_96 GC-08-255-8-23

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._IMC_96

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8823 6
 Dapeng Zhang, 2016

5._IMC_96

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8823 5
 Dapeng Zhang, 2016

6._IMC_96

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8823 2
 Dapeng Zhang, 2016

7._IMC_96

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8823 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

8._NA_45 GC-01-111-6-08

90.8 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

9._NA_45 GC-01-111-6-08

90.8 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._NA_45 GC-01-111-6-08

90.8 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

11._NA_45 GC-01-111-6-08

90.8 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

12._NA_45 GC-01-111-6-08

90.8 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

13._NA_45 GC-01-111-6-08

90.8 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP2
 Mars, 2018

14._POUND_5_/C GC-08-165-4-08

90.8 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

15._POUND_5_/C GC-08-165-4-08

90.8 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

16._NA_45 GC-01-111-6-08

90.7 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

17._POUND_5_/C GC-08-165-4-08

90.7 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

18._POUND_5_/C GC-08-165-4-08

90.7 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

19._NA_45 GC-01-111-6-08

90.1 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240