SNP Profiles matching IMC 96

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 Key

 1234567891011121314
_Input profile
AAAACTAAAGGGCCCCCCCCGGTTTTAA
1._GC-08-255-8-23
AAAACTAAAGGGCCCCCCCCGGTTTTAA
2._GC-08-255-8-23
AAAACTAAAGGGCCCCCCCCGGTTTTAA
3._GC-08-255-8-23
AAAACTAAAGGGCCCCCCCCGGTTTTAA
4._IMC_96
AAAACTAA________CCCCGG______
5._IMC_96
AAAACTAA________CCCCGG______
6._IMC_96
AAAACTAA________CCCCGG______
7._IMC_96
AAAACTAA________CCCCGG______
8._GC-01-111-6-08
AA__TTAAGGGGCCCCCCCCGGTTTTAA
9._GC-01-111-6-08
AA__TTAAGGGGCCCCCCCCGGTTTTAA
10._GC-01-111-6-08
AA__TTAAGGGGCCCCCCCCGGTTTTAA
11._GC-01-111-6-08
AA__TTAAGGGGCCCCCCCCGGTTTTAA
12._GC-01-111-6-08
AA__TTAAGGGGCCCCCCCCGGTTTTAA
13._GC-01-111-6-08
AA__TTAAGGGGCCCCCCCCGGTTTTAA
14._GC-08-165-4-08
AA__CTAAGGGGCCCCCCCCGGTTTTAA
15._GC-08-165-4-08
AA__CTAAGGGGCCCCCCCCGGTTTTAA
16._GC-01-111-6-08
AA__TTAAGGGGCCCCCCCCGGTTTTAA
17._GC-08-165-4-08
AA__CTAAGGGGCCCCCCCCGGTTTTAA
18._GC-08-165-4-08
AA__CTAAGGGGCCCCCCCCGGTTTTAA
19._GC-01-111-6-08
AA__TTAAGGGGCCCCCCCCGGTTTTAA
20._MARPER_38
AAAACT____________CCGG______
 1516171819202122232425262728
_Input profile
AAAAGGGGCCGGCCAATTGGATAACGCC
1._GC-08-255-8-23
AAAAGGGGCCGGCCAATTGGATAACGCC
2._GC-08-255-8-23
AAAAGGGG__GGCCAATTGGATAACGCC
3._GC-08-255-8-23
AAAAGGGGCCGGCCAATTGGATAACGCC
4._IMC_96
____GG____GG________ATAA__CC
5._IMC_96
____GG____GG________ATAA__CC
6._IMC_96
____GG____GG________ATAA__CC
7._IMC_96
____GG____GG________ATAA__CC
8._GC-01-111-6-08
AA__GGGGCCGGCTAATTGGTTAACCCG
9._GC-01-111-6-08
AA__GGGGCCGGCTAATTGGTTAACCCG
10._GC-01-111-6-08
AA__GGGGCCGGCTAATTGGTTAACCCG
11._GC-01-111-6-08
AA__GGGGCCGGCTAATTGGTTAACCCG
12._GC-01-111-6-08
AA__GGGGCCGGCTAATTGGTTAACCCG
13._GC-01-111-6-08
AA__GGGGCCGGCTAATTGGTTAACCCG
14._GC-08-165-4-08
AA__GGGGCCGGCTAATTGGTTAACCGG
15._GC-08-165-4-08
AA__GGGGCCGGCTAATTGGTTAACCGG
16._GC-01-111-6-08
AA__GGGGCCGGCTAATTGGTTAACCCG
17._GC-08-165-4-08
AA__GGGGCCGGCTAATTGGTTAACCGG
18._GC-08-165-4-08
AA__GGGGCCGGCTAATTGGTTAACCGG
19._GC-01-111-6-08
AA__GGGGCCGGCTAATTGGTTAACCCG
20._MARPER_38
____AGTT__GG________TT______
 2930313233343536373839404142
_Input profile
AATTGTAGGGCCGGGGGTTTAACCGGCC
1._GC-08-255-8-23
AATTGTAGGGCCGGGGGTTTAACCGGCC
2._GC-08-255-8-23
AATTGTAGGGCCGGGGGTTTAACCGGCC
3._GC-08-255-8-23
AATTGTAGGGCCGGGGGTTTAACCGGCC
4._IMC_96
AA______GG__GGGG____AA______
5._IMC_96
AA______GG__GGGG____AA______
6._IMC_96
AA______GG__GGGG____AA______
7._IMC_96
AA______GG__GGGG____AA______
8._GC-01-111-6-08
AATTGGGGGGCCAGGGGGTTAACCGGCC
9._GC-01-111-6-08
AATTGGGGGGCCAGGGGGTTAACCGGCC
10._GC-01-111-6-08
AATTGGGGGGCCAGGGGGTTAACCGGCC
11._GC-01-111-6-08
AATTGGGGGGCCAGGGGGTTAACCGGCC
12._GC-01-111-6-08
AATTGGGGGGCCAGGGGGTTAACCGGCC
13._GC-01-111-6-08
AATTGGGGGGCCAGGGGGTTAACCGGCC
14._GC-08-165-4-08
AATTGGGGGGCCGGGGGGTTAACCGGCC
15._GC-08-165-4-08
AATTGGGGGGCCGGGGGGTTAACCGGCC
16._GC-01-111-6-08
AATTGGGGGGCCAGGGGGTTAACCGGCC
17._GC-08-165-4-08
AATTGGGGGGCCGGGGGGTTAACCGGCC
18._GC-08-165-4-08
AATTGGGGGG__GGGGGGTTAACCGGCC
19._GC-01-111-6-08
AATTGGGGGGCCAGGGGGTTAACCGGCC
20._MARPER_38
AA______GG__GGGG____AA______
 4344454647484950515253545556
_Input profile
GGTTTTAAGGAACCCCGGAGGGTTCCCC
1._GC-08-255-8-23
GGTTTTAAGGAACCCCGGAGGGTTCCCC
2._GC-08-255-8-23
GGTTTTAAGGAACCCCGGAGGGTTCCCC
3._GC-08-255-8-23
GGTTTTAAGGAACCCCGGAG__TTCCCC
4._IMC_96
____TT__________________CCCC
5._IMC_96
____TT__________________CCCC
6._IMC_96
____TT__________________CCCC
7._IMC_96
____TT__________________CCCC
8._GC-01-111-6-08
GGTTCTAAGGAACCCCGGGGGGTTCCCC
9._GC-01-111-6-08
GGTTCTAAGGAACCCCGGGGGGTTCCCC
10._GC-01-111-6-08
GGTTCTAAGGAACCCCGGGGGGTTCCCC
11._GC-01-111-6-08
GGTTCTAAGGAACCCCGGGGGGTTCCCC
12._GC-01-111-6-08
GGTTCTAAGGAACCCCGGGGGGTTCCCC
13._GC-01-111-6-08
GGTTCTAAGGAACCCCGGGGGGTTCCCC
14._GC-08-165-4-08
GGTTTTAAGGAACCCCGGAAGGTTCCCC
15._GC-08-165-4-08
GGTTTTAAGGAACCCCGGAAGGTTCCCC
16._GC-01-111-6-08
GGTTCTAAGGAACCCCGGGGGGTT__CC
17._GC-08-165-4-08
GGTTTTAAGGAACCCCGGAAGGTTCCCC
18._GC-08-165-4-08
GGTTTTAAGGAACCCCGGAAGGTTCCCC
19._GC-01-111-6-08
GGTTCTAAGGAACCCCGGGGGGTTCTCC
20._MARPER_38
____TT____________________CC
 5758596061626364656667686970
_Input profile
TTGGCGCCTTAAGGGGACAGGGGGGGTT
1._GC-08-255-8-23
TTGGCGCCTTAAGGGGACAGGGGGGGTT
2._GC-08-255-8-23
TTGGCGCCTTAAGGGGACAGGGGGGGTT
3._GC-08-255-8-23
TTGGCGCCTTAAGGGGACAGGGGGGGTT
4._IMC_96
____CG__TTAAGG__ACAGGGGG____
5._IMC_96
____CG__TTAAGG__ACAGGGGG____
6._IMC_96
____CG__TTAAGG__ACAGGGGG____
7._IMC_96
____CG__TTAAGG__ACAGGGGG____
8._GC-01-111-6-08
TTGGCGCCTTAAGGGGACAGGTGGGGTT
9._GC-01-111-6-08
TTGGCGCCTTAAGGGGACAGGTGGGGTT
10._GC-01-111-6-08
TTGGCGCCTTAAGGGGACAGGTGGGGTT
11._GC-01-111-6-08
TTGGCGCCTTAAGGGGACAGGTGGGGTT
12._GC-01-111-6-08
TTGGCGCCTTAAGGGGACAGGTGGGGTT
13._GC-01-111-6-08
TTGGCGCCTTAAGGGGACAGGTGGGGTT
14._GC-08-165-4-08
TTGGCCCCTTAAGGGGCCAGGGGGGGTT
15._GC-08-165-4-08
TTGGCCCCTTAAGGGGCCAGGGGGGGTT
16._GC-01-111-6-08
TTGGCGCCTTAAGGGGACAGGTGGGGTT
17._GC-08-165-4-08
TTGGCCCCTTAAGGGGCCAGGGGGGGTT
18._GC-08-165-4-08
TTGGCCCCTTAAGGGGCCAGGGGGGGTT
19._GC-01-111-6-08
TTGGCGCCTTAAGGGGACAGGTGGGGTT
20._MARPER_38
________TT________AA__GG____
 7172737475767778798081828384
_Input profile
CCAACTAAAACCACAACCCGCCAACCCC
1._GC-08-255-8-23
CCAACTAAAACCACAACCCGCCAACCCC
2._GC-08-255-8-23
CCAACTAAAACCACAACCCGCCAACCCC
3._GC-08-255-8-23
CCAACTAAAACCACAACCCGCCAACCCC
4._IMC_96
__AACT__________CCCG______CC
5._IMC_96
__AACT__________CCCG______CC
6._IMC_96
__AACT__________CCCG______CC
7._IMC_96
__AACT__________CCCG______CC
8._GC-01-111-6-08
CCAACTAAAACCACAACCCGCCAACCCC
9._GC-01-111-6-08
CCAACTAAAACCACAACCCGCCAACCCC
10._GC-01-111-6-08
CCAACTAAAACCACAACCCGCCAACCCC
11._GC-01-111-6-08
CCAACTAAAACCACAACCCGCCAACCCC
12._GC-01-111-6-08
CCAACTAAAACCACAACCCGCCAACCCC
13._GC-01-111-6-08
CCAACTAAAACCACAACCCGCCAACCCC
14._GC-08-165-4-08
CCAACCAAAACCACAACCGGCCAACCCC
15._GC-08-165-4-08
CCAACCAAAACCACAACCGGCCAACCCC
16._GC-01-111-6-08
CCAACTAAAACCACAACCCGCCAACCCC
17._GC-08-165-4-08
CCAACCAAAACCACAACCGGCC__CCCC
18._GC-08-165-4-08
CCAACCAAAACCACAACCGGCCAACCCC
19._GC-01-111-6-08
CCAACTAA__CCACAACCCGCCAACCCC
20._MARPER_38
__AA____________CCCG______CC
 85868788899091929394    
_Input profile
TTCCCTAACCCCGTTTTTGGX_XX_XX_XX_X
1._GC-08-255-8-23
TTCCCTAACCCCGTTTTTGGX_XX_XX_XX_X
2._GC-08-255-8-23
TTCCCTAACCCCGTTTTTGGX_XX_XX_XX_X
3._GC-08-255-8-23
TTCCCTAACCCCGTTTTTGGX_XX_XX_XX_X
4._IMC_96
TTCC__AA__CCGTTT____X_XX_XX_XX_X
5._IMC_96
TTCC__AA__CCGTTT____X_XX_XX_XX_X
6._IMC_96
TTCC__AA__CCGTTT____X_XX_XX_XX_X
7._IMC_96
TTCC__AA__CCGTTT____X_XX_XX_XX_X
8._GC-01-111-6-08
TTCCTTAACCCTTTTTTTGGX_XX_XX_XX_X
9._GC-01-111-6-08
TTCCTTAACCCTTTTTTTGGX_XX_XX_XX_X
10._GC-01-111-6-08
TTCCTTAACCCTTTTTTTGGX_XX_XX_XX_X
11._GC-01-111-6-08
TTCCTTAACCCTTTTTTTGGX_XX_XX_XX_X
12._GC-01-111-6-08
TTCCTTAACCCTTTTTTTGGX_XX_XX_XX_X
13._GC-01-111-6-08
TTCCTTAACCCTTTTTTTGGX_XX_XX_XX_X
14._GC-08-165-4-08
TTCCTTAACCCCTTTTTTGGX_XX_XX_XX_X
15._GC-08-165-4-08
TTCCTTAACCCCTTTTTTGGX_XX_XX_XX_X
16._GC-01-111-6-08
TTCCTTAACCCTTTTTTTGGX_XX_XX_XX_X
17._GC-08-165-4-08
TTCCTTAACCCCTTTTTTGGX_XX_XX_XX_X
18._GC-08-165-4-08
TTCCTTAACCCCTTTTTTGGX_XX_XX_XX_X
19._GC-01-111-6-08
TTCCTTAACCCTTTTTTTGGX_XX_XX_XX_X
20._MARPER_38
TT____AA__CC________X_XX_XX_XX_X

Input profile: IMC_96 GC-08-255-8-23

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

1._IMC_96 GC-08-255-8-23

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

2._IMC_96 GC-08-255-8-23

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

3._IMC_96 GC-08-255-8-23

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

4._IMC_96

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8823 6
 Dapeng Zhang, 2016

5._IMC_96

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8823 5
 Dapeng Zhang, 2016

6._IMC_96

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8823 2
 Dapeng Zhang, 2016

7._IMC_96

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8823 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

8._NA_45 GC-01-111-6-08

91.3 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

9._NA_45 GC-01-111-6-08

91.3 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._NA_45 GC-01-111-6-08

91.3 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

11._NA_45 GC-01-111-6-08

91.3 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

12._NA_45 GC-01-111-6-08

91.3 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

13._NA_45 GC-01-111-6-08

91.3 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP2
 Mars, 2018

14._POUND_5_/C GC-08-165-4-08

91.3 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

15._POUND_5_/C GC-08-165-4-08

91.3 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

16._NA_45 GC-01-111-6-08

91.2 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

17._POUND_5_/C GC-08-165-4-08

91.2 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

18._POUND_5_/C GC-08-165-4-08

91.2 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

19._NA_45 GC-01-111-6-08

90.7 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

20._MARPER_38

90.4 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 167
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240