SNP Profiles matching JA 6 /2 [POU]

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 Key

 1234567891011121314
_Input profile
TTCCCCAAAATTTTCCCTAGTTCTCTAT
1._GC-08-091-2-14
TTCCCCAAAATTTTCCCTAGTTCTCTAT
2._JA_6_/2_[POU]
TTCCCC____CCCTAG_CT__
3._JA_6_/2_[POU]
TTCCCC____CCCTAG_CT__
4._JA_6_/2_[POU]
TTCCCC____CCCTAG_CT__
5._JA_6_/2_[POU]
TTCCCC____CCCTAG_CT__
6._JA_6_/2_[POU]
TTCCCC____CCCTAG_CT__
7._JA_6_/2_[POU]
TTCCCC____CCCTAG_CT__
8._JA_6_/2_[POU]
TTCCCC____CCCTAG_CT__
9._JA_6_/2_[POU]
TTCCCC____CCCTAG_CT__
10._JA_6_/2_[POU]
TTCCCC____CCCTAG_CT__
11._JA_6_/2_[POU]
TTCCCC____CCCTAG_CT__
12._JA_6_/2_[POU]
TTCCCC____CCCTAG_CT__
13._JA_6_/2_[POU]
_CCCC____CCCTAG_CT__
14._JA_6_/2_[POU]
ATCCCC____CCCTAG_CT__
 1516171819202122232425262728
_Input profile
ACAAAACGCCGGCTAACTGGATATCCGG
1._GC-08-091-2-14
ACAAAACGCCGGCTAACTGGATATCCGG
2._JA_6_/2_[POU]
__AA__GG____ATAT_GG
3._JA_6_/2_[POU]
__AA__GG____ATAT_GG
4._JA_6_/2_[POU]
__AA__GG____ATAT_GG
5._JA_6_/2_[POU]
__AA__GG____ATAT_GG
6._JA_6_/2_[POU]
__AA__GG____ATAT_GG
7._JA_6_/2_[POU]
__AA__GG____ATAT_GG
8._JA_6_/2_[POU]
__AA__GG____ATAT_GG
9._JA_6_/2_[POU]
__AA__GG____ATAT_GG
10._JA_6_/2_[POU]
__AA__GG____ATAT_GG
11._JA_6_/2_[POU]
__AA__GG____ATAT_GG
12._JA_6_/2_[POU]
__AA__GG____ATAT_GG
13._JA_6_/2_[POU]
__AA__GG____ATAT_GG
14._JA_6_/2_[POU]
__AA__GG____ATAT_GG
 2930313233343536373839404142
_Input profile
ATTTTTAGCCCCAAGTGGTTGGCTGGCG
1._GC-08-091-2-14
ATTTTTAGCCCCAAGTGGTTGGCTGGCG
2._JA_6_/2_[POU]
AT___CC_AAGT__GG___
3._JA_6_/2_[POU]
AT___CC_AAGT__GG___
4._JA_6_/2_[POU]
AT___CC_AAGT__GG___
5._JA_6_/2_[POU]
AT___CC_AAGT__GG___
6._JA_6_/2_[POU]
AT___CC_AAGT__GG___
7._JA_6_/2_[POU]
AT___CC_AAGT__GG___
8._JA_6_/2_[POU]
AT___CC_AAGT__GG___
9._JA_6_/2_[POU]
AT___CC_AAGT__GG___
10._JA_6_/2_[POU]
AT___CC_AAGT__GG___
11._JA_6_/2_[POU]
AT___CC_AAGT__GG___
12._JA_6_/2_[POU]
AT___CC_AAGT__GG___
13._JA_6_/2_[POU]
AT___CC_AAGT__GG___
14._JA_6_/2_[POU]
AT___CC_AAGT__GG___
 4344454647484950515253545556
_Input profile
GGTTCTAAGGAACCACGGAATTCTCCTT
1._GC-08-091-2-14
GGTTCTAAGGAACCACGGAATTCTCCTT
2._JA_6_/2_[POU]
__CT________CTCC_
3._JA_6_/2_[POU]
__CT________CTCC_
4._JA_6_/2_[POU]
__CT________CTCC_
5._JA_6_/2_[POU]
__CT________CTCC_
6._JA_6_/2_[POU]
__CT________CTCC_
7._JA_6_/2_[POU]
__CT________CTCC_
8._JA_6_/2_[POU]
__CT________CTCC_
9._JA_6_/2_[POU]
__CT________CTCC_
10._JA_6_/2_[POU]
__CT________CTCC_
11._JA_6_/2_[POU]
__CT________CTCC_
12._JA_6_/2_[POU]
__CT_________CC_
13._JA_6_/2_[POU]
__CT________CTCC_
14._JA_6_/2_[POU]
__CT________CTCC_
 5758596061626364656667686970
_Input profile
AGCCCCCTACCGAGCCAAGGGGAGTTCC
1._GC-08-091-2-14
AGCCCCCTACCGAGCCAAGGGGAGTTCC
2._JA_6_/2_[POU]
_CC_CTACCG_CCAAGGGG___
3._JA_6_/2_[POU]
_CC_CTACCG_CCAAGGGG___
4._JA_6_/2_[POU]
_CC_CTACCG_CCAAGGGG___
5._JA_6_/2_[POU]
_CC_CTACCG_CCAAGGGG___
6._JA_6_/2_[POU]
_CC_CTACCG_CCAAGGGG___
7._JA_6_/2_[POU]
_CC_CTACCG_CCAAGGGG___
8._JA_6_/2_[POU]
_CC_CTACCG_CCAAGGGG___
9._JA_6_/2_[POU]
_CC_CTACCG_CCAAGGGG___
10._JA_6_/2_[POU]
_CC_CTACCG_CCAAGGGG___
11._JA_6_/2_[POU]
_CC_CTACCG_CCAAGGGG___
12._JA_6_/2_[POU]
_CC_CTACCG_CCAAGGGG___
13._JA_6_/2_[POU]
_CC_CTACCG_CCAAGG____
14._JA_6_/2_[POU]
_CC_CTACCG_CCAAGGGG___
 7172737475767778798081828384
_Input profile
AACTAAAACCACAGAACCCCAACCCTTT
1._GC-08-091-2-14
AACTAAAACCACAGAACCCCAACCCTTT
2._JA_6_/2_[POU]
AACT_____AACC___CTTT
3._JA_6_/2_[POU]
AACT_____AACC___CTTT
4._JA_6_/2_[POU]
AACT_____AACC___CTTT
5._JA_6_/2_[POU]
AACT_____AACC___CTTT
6._JA_6_/2_[POU]
AACT_____AACC___CTTT
7._JA_6_/2_[POU]
AACT_____AACC___CTTT
8._JA_6_/2_[POU]
AACT_____AACC___CTTT
9._JA_6_/2_[POU]
AACT_____AACC___CTTT
10._JA_6_/2_[POU]
AACT_____AACC___CTTT
11._JA_6_/2_[POU]
AACT_____AACC___CTTT
12._JA_6_/2_[POU]
AACT_____AACC___CTTT
13._JA_6_/2_[POU]
AACT_____AACC___CTTT
14._JA_6_/2_[POU]
AGCT_____AACC___CTTT
 858687888990919293     
_Input profile
CCCTAGCCCCGTCTTTGGX_XX_XX_XX_XX_X
1._GC-08-091-2-14
CCCTAGCCCCGTCTTTGGX_XX_XX_XX_XX_X
2._JA_6_/2_[POU]
CC_AG_CCGTCT__X_XX_XX_XX_XX_X
3._JA_6_/2_[POU]
CC_AG_CCGTCT__X_XX_XX_XX_XX_X
4._JA_6_/2_[POU]
CC_AG_CCGTCT__X_XX_XX_XX_XX_X
5._JA_6_/2_[POU]
CC_AG_CCGTCT__X_XX_XX_XX_XX_X
6._JA_6_/2_[POU]
CC_AG_CCGTCT__X_XX_XX_XX_XX_X
7._JA_6_/2_[POU]
CC_AG_CCGTCT__X_XX_XX_XX_XX_X
8._JA_6_/2_[POU]
CC_AG_CCGTCT__X_XX_XX_XX_XX_X
9._JA_6_/2_[POU]
CC_AG_CCGTCT__X_XX_XX_XX_XX_X
10._JA_6_/2_[POU]
CC_AG_CCGTCT__X_XX_XX_XX_XX_X
11._JA_6_/2_[POU]
CC_AG_CCGTCT__X_XX_XX_XX_XX_X
12._JA_6_/2_[POU]
CC_AG_CCGTCT__X_XX_XX_XX_XX_X
13._JA_6_/2_[POU]
CC_AG_CCGTCT__X_XX_XX_XX_XX_X
14._JA_6_/2_[POU]
CC_AG_CCGTCT__X_XX_XX_XX_XX_X

Input profile: JA_6_/2_[POU] GC-08-091-2-14

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

1._JA_6_/2_[POU] GC-08-091-2-14

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

2._JA_6_/2_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 3 > FP
 Dapeng Zhang, 2016

3._JA_6_/2_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 2 > FP
 Dapeng Zhang, 2016

4._JA_6_/2_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 1 > FP
 Dapeng Zhang, 2016

5._JA_6_/2_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 13
 Dapeng Zhang, 2016

6._JA_6_/2_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 11
 Dapeng Zhang, 2016

7._JA_6_/2_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 9
 Dapeng Zhang, 2016

8._JA_6_/2_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 7
 Dapeng Zhang, 2016

9._JA_6_/2_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 5
 Dapeng Zhang, 2016

10._JA_6_/2_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

11._JA_6_/2_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

12._JA_6_/2_[POU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 10
 Dapeng Zhang, 2016

13._JA_6_/2_[POU]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 15
 Dapeng Zhang, 2016

14._JA_6_/2_[POU]

97.4 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper C 364
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240