SNP Profiles matching ICS-16

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAACCTACGGGGCCCCCCCCGGTTCCTT
1._GC-08-067-1-89
AAACCTACGGGGCCCCCCCCGGTTCCTT
2._GC-08-067-1-89
AAACCTACGGGGCCCCCCCCGGTTCCTT
3._GC-08-067-1-89
AAACCTACGGGGCCCCCCCCGGTTCCTT
4._GC-08-067-1-89
AAACCTACGGGGCCCCCCCCGGTTCCTT
5._GC-08-067-1-89
AAACCTACGGGGCCCCCCCCGGTTCCTT
6._GC-08-067-1-89
AAACCTACGGGGCCCCCCCCGGTTCCTT
7._GC-08-067-1-89
AAACCTACGGGGCCCCCCCCGGTTCCTT
8._GC-08-067-1-89
AAACCTACGGGGCCCCCCCCGGTTCCTT
9._GC-08-067-1-89
AAACCTACGGGGCCCCCCCCGGTTCCTT
10._ICS_16
AAACCTAC________CCCCGG__CC__
11._ICS_16
AAACCTAC________CCCCGG__CC__
12._ICS_16
AAACCTAC________CCCCGG__CC__
13._ICS_16
AAACCTAC________CCCCGG__CC__
14._ICS_16
AAACCTAC________CCCCGG__CC__
15._ICS_16
AAACCTAC________CCCCGG__CC__
16._ICS_16
AAACCTAC________CCCCGG__CC__
17._ICS_16
AAACCTAC________CCCCGG__CC__
18._ICS_16
AAACCTAC________CCCCGG__CC__
19._ICS_16
AAACCTAC________CCCCGG__CC__
20._PA_90_[PER]
AAACCTAC________CCCCGG__CC__
21._PA_150_[PER]
AAACCTAC________CCCCGG__CC__
22._PA_150_[PER]
AAACCTAC________CCCCGG__CC__
23._PA_150_[PER]
AAACCTAC________CCCCGG__CC__
24._PA_150_[PER]
AAACCTAC________CCCCGG__CC__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCAAGGCGCCCGTTAATTGGAAAACC
1._GC-08-067-1-89
AACCAAGGCGCCCGTTAATTGGAAAACC
2._GC-08-067-1-89
AACCAAGGCGCCCGTTAATTGGAAAACC
3._GC-08-067-1-89
AACCAAGGCGCCCGTTAATTGGAAAACC
4._GC-08-067-1-89
AACCAAGGCGCCCGTTAATTGGAAAACC
5._GC-08-067-1-89
AACCAAGGCGCCCGTTAATTGGAAAACC
6._GC-08-067-1-89
AACCAAGGCGCCCGTTAATTGGAAAACC
7._GC-08-067-1-89
AACCAAGGCGCCCGTTAATTGGAAAACC
8._GC-08-067-1-89
AACCAAGGCG__CGTTAATTGGAAAACC
9._GC-08-067-1-89
AACCAAGGCGCC__TTAATTGGAAAACC
10._ICS_16
______GG____CG________AAAA__
11._ICS_16
______GG____CG________AAAA__
12._ICS_16
______GG____CG________AAAA__
13._ICS_16
______GG____CG________AAAA__
14._ICS_16
______GG____CG________AAAA__
15._ICS_16
______GG____CG________AAAA__
16._ICS_16
______GG____CG________AAAA__
17._ICS_16
______GG____CG________AAAA__
18._ICS_16
______GG____CG________AAAA__
19._ICS_16
______GG______________AAAA__
20._PA_90_[PER]
______GGTTCCCG________AAAA__
21._PA_150_[PER]
______GG____CC________AAAA__
22._PA_150_[PER]
______GG____CC________AAAA__
23._PA_150_[PER]
______GG____CC________AAAA__
24._PA_150_[PER]
______GG____CC________AAAA__
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGAATTGTGGGGCCAGGGGGGTGGCTGG
1._GC-08-067-1-89
GGAATTGTGGGGCCAGGGGGGTGGCTGG
2._GC-08-067-1-89
GGAATTGTGGGGCCAGGGGGGTGGCTGG
3._GC-08-067-1-89
GGAATTGTGGGGCCAGGGGGGTGGCTGG
4._GC-08-067-1-89
GGAATTGTGGGGCCAGGGGGGTGGCTGG
5._GC-08-067-1-89
GGAATTGTGGGGCCAGGGGGGTGGCTGG
6._GC-08-067-1-89
GGAATTGTGGGGCCAGGGGGGTGGCTGG
7._GC-08-067-1-89
GGAATTGTGGGGCCAGGGGGGTGGCTGG
8._GC-08-067-1-89
GGAATTGTGGGGCCAGGGGGGTGGCTGG
9._GC-08-067-1-89
GGAATTGTGGGGCCAGGGGGGTGGCTGG
10._ICS_16
GGAA______GG__AGGG____GG____
11._ICS_16
GGAA______GG__AGGG____GG____
12._ICS_16
GGAA______GG__AGGG____GG____
13._ICS_16
GGAA______GG__AGGG____GG____
14._ICS_16
GGAA______GG__AGGG____GG____
15._ICS_16
GGAA______GG__AGGG____GG____
16._ICS_16
GGAA______GG__AGGG____GG____
17._ICS_16
GGAA______GG__AGGG____GG____
18._ICS_16
GGAA______GG__AGGG____GG____
19._ICS_16
GGAA______GG__AGGG____GG____
20._PA_90_[PER]
GGAA______GG__AGGG____GG____
21._PA_150_[PER]
GGAA______CG__AGGG____AG____
22._PA_150_[PER]
GGAA______CG__AGGG____AG____
23._PA_150_[PER]
GGAA______CG__AGGG____AG____
24._PA_150_[PER]
GGAA______CG__AGGG____AG____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCGGTTTTAAGGAACCCCGGAGGGTTCC
1._GC-08-067-1-89
CCGGTTTTAAGGAACCCCGGAGGGTTCC
2._GC-08-067-1-89
CCGGTTTTAAGGAACCCCGGAGGGTTCC
3._GC-08-067-1-89
CCGGTTTTAAGGAACCCCGGAGGGTTCC
4._GC-08-067-1-89
CCGGTTTTAAGGAACCCCGGAGGGTTCC
5._GC-08-067-1-89
CCGGTTTTAAGGAACCCCGGAGGGTTCC
6._GC-08-067-1-89
CCGGTTTTAAGGAACCCCGGAGGGTTCC
7._GC-08-067-1-89
CCGGTTTTAAGGAACCCCGGAGGGTTCC
8._GC-08-067-1-89
CCGGTTTTAAGGAACCCCGGAGGGTTCC
9._GC-08-067-1-89
CCGGTTTTAAGGAACCCCGGAGGGTTCC
10._ICS_16
______TT__________________CC
11._ICS_16
______TT__________________CC
12._ICS_16
______TT__________________CC
13._ICS_16
______TT__________________CC
14._ICS_16
______TT__________________CC
15._ICS_16
______TT__________________CC
16._ICS_16
______TT__________________CC
17._ICS_16
______TT__________________CC
18._ICS_16
______TT__________________CC
19._ICS_16
______TT__________________CC
20._PA_90_[PER]
______TT__________________CC
21._PA_150_[PER]
______TT__________________CC
22._PA_150_[PER]
______TT__________________CC
23._PA_150_[PER]
______TT__________________CC
24._PA_150_[PER]
______TT__________________CC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CTTTGGCCCCCCAAGGGGACGGTTGGGG
1._GC-08-067-1-89
CTTTGGCCCCCCAAGGGGACGGTTGGGG
2._GC-08-067-1-89
CTTTGGCCCCCCAAGGGGACGGTTGGGG
3._GC-08-067-1-89
CTTTGGCCCCCCAAGGGGACGGTTGGGG
4._GC-08-067-1-89
CTTTGGCCCCCCAAGGGGACGGTTGGGG
5._GC-08-067-1-89
CTTTGGCCCCCCAAGGGGACGGTTGGGG
6._GC-08-067-1-89
CTTTGGCCCCCCAAGGGGACGGTTGGGG
7._GC-08-067-1-89
CTTTGGCCCCCCAAGGGGACGGTTGGGG
8._GC-08-067-1-89
CTTTGGCCCCCCAAGGGGACGGTTGGGG
9._GC-08-067-1-89
CTTT__CCCCCCAAGGGGACGGTTGGGG
10._ICS_16
CT____CC__CCAAGG__ACGGTTGG__
11._ICS_16
CT____CC__CCAAGG__ACGGTTGG__
12._ICS_16
CT____CC__CCAAGG__ACGGTTGG__
13._ICS_16
CT____CC__CCAAGG__ACGGTTGG__
14._ICS_16
CT____CC__CCAAGG__ACGGTTGG__
15._ICS_16
CT____CC__CCAAGG__ACGGTTGG__
16._ICS_16
CT____CC__CCAAGG__ACGGTTGG__
17._ICS_16
CT____CC__CCAAGG__ACGGTTGG__
18._ICS_16
CT____CC__CCAAGG__ACGGTTGG__
19._ICS_16
CT____CC__CCAAGG__ACGGTTGG__
20._PA_90_[PER]
CT________CCAAGG__ACGGTT____
21._PA_150_[PER]
CT____CC__CCAAGG__ACGGTTGG__
22._PA_150_[PER]
CT____CC__CCAAGG__ACGGTTGG__
23._PA_150_[PER]
CT____CC__CCAAGG__ACGGTTGG__
24._PA_150_[PER]
CT________CCAAGG__ACGGTTGG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CTCCAGCTACAAAAACAGAAGGCCAAAA
1._GC-08-067-1-89
CTCCAGCTACAAAAACAGAAGGCCAAAA
2._GC-08-067-1-89
CTCCAGCTACAAAAACAGAAGGCCAAAA
3._GC-08-067-1-89
CTCCAGCTACAAAAACAGAAGGCCAAAA
4._GC-08-067-1-89
CTCCAGCTACAAAAACAGAAGGCCAAAA
5._GC-08-067-1-89
CTCCAGCTACAAAAACAGAAGGCCAAAA
6._GC-08-067-1-89
CTCCAGCTACAAAAACAGAAGGCCAAAA
7._GC-08-067-1-89
CTCCAGCTACAAAAACAGAAGGCCAAAA
8._GC-08-067-1-89
CTCCAGCTACAAAAACAGAAGGCCAAAA
9._GC-08-067-1-89
CTCCAGCTACAAAAACAGAAGGCCAAAA
10._ICS_16
____AGCT__________AAGG______
11._ICS_16
____AGCT__________AAGG______
12._ICS_16
____AGCT__________AAGG______
13._ICS_16
____AGCT__________AAGG______
14._ICS_16
____AGCT__________AAGG______
15._ICS_16
____AGCT__________AAGG______
16._ICS_16
____AGCT__________AAGG______
17._ICS_16
____AGCT__________AAGG______
18._ICS_16
____AGCT__________AAGG______
19._ICS_16
____AGCT__________AAGG______
20._PA_90_[PER]
____AACT__________AAGG______
21._PA_150_[PER]
____AACT__________ACGG______
22._PA_150_[PER]
____AACT__________ACGG______
23._PA_150_[PER]
____AACT__________ACGG______
24._PA_150_[PER]
____AACT__________ACGG______
 85 86 87 88 89 90 91 92 93 94 95    
_Input profile
CTCTCCCTAGCTCCTTTTAAGGX_XX_XX_X
1._GC-08-067-1-89
CTCTCCCTAGCTCCTTTTAAGGX_XX_XX_X
2._GC-08-067-1-89
CTCTCCCTAGCTCCTTTTAAGGX_XX_XX_X
3._GC-08-067-1-89
CTCTCCCTAGCTCCTTTTAAGGX_XX_XX_X
4._GC-08-067-1-89
CTCTCCCTAGCTCCTTTTAAGGX_XX_XX_X
5._GC-08-067-1-89
CTCTCCCTAGCTCCTTTTAAGGX_XX_XX_X
6._GC-08-067-1-89
CTCTCCCTAGCTCCTTTTAAGGX_XX_XX_X
7._GC-08-067-1-89
CTCTCCCTAGCT__TTTTAAGGX_XX_XX_X
8._GC-08-067-1-89
CTCTCCCTAGCTCCTTTTAAGGX_XX_XX_X
9._GC-08-067-1-89
CTCTCCCTAGCTCCTTTTAAGGX_XX_XX_X
10._ICS_16
CTCTCC__AG__CCTTTT____X_XX_XX_X
11._ICS_16
CTCTCC__AG__CCTTTT____X_XX_XX_X
12._ICS_16
CTCTCC__AG__CCTTTT____X_XX_XX_X
13._ICS_16
CTCTCC__AG__CCTTTT____X_XX_XX_X
14._ICS_16
CTCTCC__AG__CCTTTT____X_XX_XX_X
15._ICS_16
CTCTCC__AG__CCTTTT____X_XX_XX_X
16._ICS_16
CTCTCC__AG__CCTTTT____X_XX_XX_X
17._ICS_16
CTCTCC__AG__CCTTTT____X_XX_XX_X
18._ICS_16
CTCTCC__AG____TTTT____X_XX_XX_X
19._ICS_16
CTCTCC__AG__CCTTTT____X_XX_XX_X
20._PA_90_[PER]
CTCTCC__AG__CCTTTT____X_XX_XX_X
21._PA_150_[PER]
TTCCCC__AG__CCTTTT____X_XX_XX_X
22._PA_150_[PER]
TTCCCC__AG__CCTTTT____X_XX_XX_X
23._PA_150_[PER]
TTCCCC__AG__CCTTTT____X_XX_XX_X
24._PA_150_[PER]
TTCC____AG__CCTTTT____X_XX_XX_X

Input profile: ICS_16 GC-08-067-1-89

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

1._ICS_16 GC-08-067-1-89

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._ICS_16 GC-08-067-1-89

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

3._ICS_16 GC-08-067-1-89

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

4._ICS_16 GC-08-067-1-89

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

5._ICS_16 GC-08-067-1-89

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

6._ICS_16 GC-08-067-1-89

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

7._ICS_16 GC-08-067-1-89

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

8._ICS_16 GC-08-067-1-89

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

9._ICS_16 GC-08-067-1-89

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

10._ICS_16

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8189 5 > FP
 Dapeng Zhang, 2016

11._ICS_16

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8189 3 > FP
 Dapeng Zhang, 2016

12._ICS_16

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8189 1 > FP
 Dapeng Zhang, 2016

13._ICS_16

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8189 12
 Dapeng Zhang, 2016

14._ICS_16

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8189 8
 Dapeng Zhang, 2016

15._ICS_16

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8189 7
 Dapeng Zhang, 2016

16._ICS_16

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8189 6
 Dapeng Zhang, 2016

17._ICS_16

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8189 2
 Dapeng Zhang, 2016

18._ICS_16

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8189 9 > FP
 Dapeng Zhang, 2016

19._ICS_16

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8189 10
 Dapeng Zhang, 2016

20._PA_90_[PER]

96.3 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 627
 Dapeng Zhang, 2014

21._PA_150_[PER]

91.3 %
40 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P70 1019
 Dapeng Zhang, 2016

22._PA_150_[PER]

91.3 %
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row4 C0183 28
 Dapeng Zhang, 2016

23._PA_150_[PER]

91.3 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 679
 Dapeng Zhang, 2016

24._PA_150_[PER]

90.8 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D679
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240