SNP Profiles matching EQX /O [CHA]

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 Key

 1234567891011121314
_Input profile
AAACCTACGGGGCTCCCCCCGGTTCCTT
1._EQX_/O_[CHA]
AAACCTAC________CCCCGG__CC__
2._RUQ_1569
____CTCC____CT__CC____TTCC__
3._RUQ_1564
____CTCC____CT__CC____TTCC__
4._RUQ_1531
____CCCC____CT__CC____TTCC__
 1516171819202122232425262728
_Input profile
AACCAAGGCCGGTTAATTGGATAACCGG
1._EQX_/O_[CHA]
____AA____GG________ATAA__GG
2._RUQ_1569
________CC________GG__AACCGG
3._RUQ_1564
________CC________GG__AACCGG
4._RUQ_1531
________CC________GG__AACCGG
 2930313233343536373839404142
_Input profile
AATTGTGGCCCCAGGTGGGTAGTTAGCC
1._EQX_/O_[CHA]
AA______CC__AGGT____AG______
2._RUQ_1569
______GGCGCCAGGG____AGTT____
3._RUQ_1564
______GGCGCCAGGG____AGTT____
4._RUQ_1531
______GGCGCCAGGG____AGTT____
 4344454647484950515253545556
_Input profile
GGTTCCAAGGAACCCCGGAGGTTTCCCT
1._EQX_/O_[CHA]
____CC__________________CCCT
2._RUQ_1569
GGTT____GG____________CTCC__
3._RUQ_1564
GGTT____GG____________CTCC__
4._RUQ_1531
GGTT____GG____________TTCC__
 5758596061626364656667686970
_Input profile
TTAGCCCTCCAAGGGGACAGTTGGGGTT
1._EQX_/O_[CHA]
____CC__CCAAGG__ACAGTTGG____
2._RUQ_1569
TT__CCCTCCAA__GGACAGGTGGGG__
3._RUQ_1564
TT__CCCTCCAA__GGACAGGTGGGG__
4._RUQ_1531
TTGGCCCTCTAA__GGACAATTGGGG__
 7172737475767778798081828384
_Input profile
CCAGCTACAAACAAAAACGGCCATAATT
1._EQX_/O_[CHA]
__AGCT__________ACGG______TT
2._RUQ_1569
________________ACCG____AATT
3._RUQ_1564
________________ACCG____AATT
4._RUQ_1531
________________ACGG____ACTT
 85868788899091929394    
_Input profile
CTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
1._EQX_/O_[CHA]
CTCT__AA__CCTTTT____X_XX_XX_XX_X
2._RUQ_1569
______AACCCCTT______X_XX_XX_XX_X
3._RUQ_1564
______AACCCCTT______X_XX_XX_XX_X
4._RUQ_1531
______AA__CCTT______X_XX_XX_XX_X

Input profile: EQX_/O_[CHA] GC-07-087-5-22

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

1._EQX_/O_[CHA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7522 1 > FP
 Dapeng Zhang, 2016

2._CRUZ_7_/14 RUQ_1569

91.7 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._PA_71_[PER] RUQ_1564

91.7 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._PA_156_[PER] RUQ_1531

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240