SNP Profiles matching PA-156

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCCCCCGGAGCTCCCCCCGGTTCCTT
1._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
2._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
3._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
4._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
5._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
6._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
7._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
8._RUQ_1531
AACCCCCC________CCCCGG__CC__
9._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
10._PA_186_[PER]
AACCCCCC________CCCCGG__CC__
11._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
12._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
13._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
14._RUQ_1531
____CCCC____CT__CC____TTCC__
15._EET_400_[ECU]
AACCCCCC________CCCCGG__CC__
16._RUQ_1569
____CTCC____CT__CC____TTCC__
17._RUQ_1564
____CTCC____CT__CC____TTCC__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCGGCCCGTTAATTGGATAACCGGAA
1._GC-05-137-3-39
AACCGGCCCGTTAATTGGATAACCGGAA
2._GC-05-137-3-39
AACCGGCCCGTTAATTGGATAACCGGAA
3._GC-05-137-3-39
AACCGGCCCGTTAATTGGATAACCGGAA
4._PA_156_[PER]
____GG__CG________ATAA__GGAA
5._PA_156_[PER]
____GG__CG________ATAA__GGAA
6._PA_156_[PER]
____GG__CG________ATAA__GGAA
7._PA_156_[PER]
____GG__CG________ATAA__GGAA
8._RUQ_1531
____GG__CG________ATAA__GGAA
9._PA_156_[PER]
____GG__CG________ATAA__GGAA
10._PA_186_[PER]
____GGCCCG________ATAA__GGAA
11._PA_156_[PER]
____GG__CG________ATAA__GGAA
12._PA_156_[PER]
____GG__CG________ATAA__GGAA
13._GC-05-137-3-39
AACCGGCCCGTTAATTGGATAACCGGAA
14._RUQ_1531
______CC________GG__AACCGG__
15._EET_400_[ECU]
____GG__CG________ATAA__GGAA
16._RUQ_1569
______CC________GG__AACCGG__
17._RUQ_1564
______CC________GG__AACCGG__
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTGTGGCGCCAGGGGGTTAGTTGGCCGG
1._GC-05-137-3-39
TTGTGGCGCCAGGGGGTTAGTTGGCCGG
2._GC-05-137-3-39
TTGTGGCGCCAGGGGGTTAGTTGGCCGG
3._GC-05-137-3-39
TTGTGGCGCCAGGGGGTTAGTTGGCCGG
4._PA_156_[PER]
______CG__AGGG____AG________
5._PA_156_[PER]
______CG__AGGG____AG________
6._PA_156_[PER]
______CG__AGGG____AG________
7._PA_156_[PER]
______CG__AGGG____AG________
8._RUQ_1531
______CG__AGGG____AG________
9._PA_156_[PER]
______CG__AGGG____AG________
10._PA_186_[PER]
______CG__AGGG____AG________
11._PA_156_[PER]
______CG__AGGG____AG________
12._PA_156_[PER]
______CG__AGGG____AG________
13._GC-05-137-3-39
TTGTGGCGCCAGGGGGTTAGTTAGCCGG
14._RUQ_1531
____GGCGCCAGGG____AGTT____GG
15._EET_400_[ECU]
______GG__AGGG____AG________
16._RUQ_1569
____GGCGCCAGGG____AGTT____GG
17._RUQ_1564
____GGCGCCAGGG____AGTT____GG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTTTAAGGAACCCCGGAGGGTTCCCCTT
1._GC-05-137-3-39
TTTTAAGGAACCCCGGAGGGTTCCCCTT
2._GC-05-137-3-39
TTTTAAGGAACCCCGGAGGGTTCCCCTT
3._GC-05-137-3-39
TTTTAAGGAACCCCGGAGGGTT__CCTT
4._PA_156_[PER]
__TT__________________CCCC__
5._PA_156_[PER]
__TT__________________CCCC__
6._PA_156_[PER]
__TT__________________CCCC__
7._PA_156_[PER]
__TT__________________CCCC__
8._RUQ_1531
__TT__________________CCCC__
9._PA_156_[PER]
__TT__________________CCCC__
10._PA_186_[PER]
__TT__________________CCCC__
11._PA_156_[PER]
__TT____________________CC__
12._PA_156_[PER]
__TT__________________CCCC__
13._GC-05-137-3-39
TTTTAAGGAACCCCGGAGGGTTCCCCTT
14._RUQ_1531
TT____GG____________TTCC__TT
15._EET_400_[ECU]
__TT__________________CTCC__
16._RUQ_1569
TT____GG____________CTCC__TT
17._RUQ_1564
TT____GG____________CTCC__TT
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
AGCCCTCTAAGGGGACAATTGGGGCTCC
1._GC-05-137-3-39
AGCCCTCTAAGGGGACAATTGGGGCTCC
2._GC-05-137-3-39
AGCCCTCTAAGGGGACAATTGGGGCTCC
3._GC-05-137-3-39
AGCCCTCTAAGGGGACAATTGGGGCTCC
4._PA_156_[PER]
__CC__CTAAGG__ACAATTGG______
5._PA_156_[PER]
__CC__CTAAGG__ACAATTGG______
6._PA_156_[PER]
__CC__CTAAGG__ACAATTGG______
7._PA_156_[PER]
__CC__CTAAGG__ACAATTGG______
8._RUQ_1531
__CC__CTAAGG__ACAATTGG______
9._PA_156_[PER]
__CC__CTAAGG__ACAATTGG______
10._PA_186_[PER]
__CC__CTAAGG__ACAATT________
11._PA_156_[PER]
__CC__CTAAGG__ACAATTGG______
12._PA_156_[PER]
______CTAAGG__ACAATTGG______
13._GC-05-137-3-39
AGCCCTCTAAGGGGACAATTGGGGCTCC
14._RUQ_1531
GGCCCTCTAA__GGACAATTGGGG____
15._EET_400_[ECU]
__CC__CCACGG__ACAATTGG______
16._RUQ_1569
__CCCTCCAA__GGACAGGTGGGG____
17._RUQ_1564
__CCCTCCAA__GGACAGGTGGGG____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
AATTCCAGAAAAAGACGGCCATACTTCC
1._GC-05-137-3-39
AATTCCAGAAAAAGACGGCCATACTTCC
2._GC-05-137-3-39
AATTCCAGAAAAAGACGGCCATACTTCC
3._GC-05-137-3-39
AATTCCAGAAAAAGACGGCCATACTTCC
4._PA_156_[PER]
AATT__________ACGG______TTCC
5._PA_156_[PER]
AATT__________ACGG______TTCC
6._PA_156_[PER]
AATT__________ACGG______TTCC
7._PA_156_[PER]
AATT__________ACGG______TTCC
8._RUQ_1531
AATT__________ACGG______TTCC
9._PA_156_[PER]
AATT__________ACGG______TTCC
10._PA_186_[PER]
AATT__________ACGG______TTCC
11._PA_156_[PER]
AATT__________ACGG______TTCC
12._PA_156_[PER]
AATT__________ACGG______TTCC
13._GC-05-137-3-39
AATTCCAGAAAAAGACGGCCATACTTCC
14._RUQ_1531
______________ACGG____ACTT__
15._EET_400_[ECU]
AATT__________ACGG______TTCT
16._RUQ_1569
______________ACCG____AATT__
17._RUQ_1564
______________ACCG____AATT__
 85 86 87 88 89 90 91 92 93      
_Input profile
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
1._GC-05-137-3-39
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
2._GC-05-137-3-39
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
3._GC-05-137-3-39
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
4._PA_156_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
5._PA_156_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
6._PA_156_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
7._PA_156_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
8._RUQ_1531
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
9._PA_156_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
10._PA_186_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
11._PA_156_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
12._PA_156_[PER]
____AA__CCTTTT____X_XX_XX_XX_XX_X
13._GC-05-137-3-39
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
14._RUQ_1531
____AA__CCTT______X_XX_XX_XX_XX_X
15._EET_400_[ECU]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
16._RUQ_1569
____AACCCCTT______X_XX_XX_XX_XX_X
17._RUQ_1564
____AACCCCTT______X_XX_XX_XX_XX_X

Input profile: PA_156_[PER] GC-05-137-3-39

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 5