SNP Profiles matching PA-156

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 Key

 1234567891011121314
_Input profile
AACCCCCCGGAGCTCCCCCCGGTTCCTT
1._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
2._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
3._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
4._PA_156_[PER]
AACCCCCC____CCCCGG_CC_
5._PA_156_[PER]
AACCCCCC____CCCCGG_CC_
6._PA_156_[PER]
AACCCCCC____CCCCGG_CC_
7._PA_156_[PER]
AACCCCCC____CCCCGG_CC_
8._RUQ_1531
AACCCCCC____CCCCGG_CC_
9._PA_156_[PER]
AACCCCCC____CCCCGG_CC_
10._PA_186_[PER]
AACCCCCC____CCCCGG_CC_
11._PA_156_[PER]
AACCCCCC____CCCCGG_CC_
12._PA_156_[PER]
AACCCCCC____CCCCGG_CC_
13._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
14._RUQ_1531
__CCCC__CT_CC__TTCC_
15._EET_400_[ECU]
AACCCCCC____CCCCGG_CC_
16._RUQ_1569
__CTCC__CT_CC__TTCC_
17._RUQ_1564
__CTCC__CT_CC__TTCC_
 1516171819202122232425262728
_Input profile
AACCGGCCCGTTAATTGGATAACCGGAA
1._GC-05-137-3-39
AACCGGCCCGTTAATTGGATAACCGGAA
2._GC-05-137-3-39
AACCGGCCCGTTAATTGGATAACCGGAA
3._GC-05-137-3-39
AACCGGCCCGTTAATTGGATAACCGGAA
4._PA_156_[PER]
__GG_CG____ATAA_GGAA
5._PA_156_[PER]
__GG_CG____ATAA_GGAA
6._PA_156_[PER]
__GG_CG____ATAA_GGAA
7._PA_156_[PER]
__GG_CG____ATAA_GGAA
8._RUQ_1531
__GG_CG____ATAA_GGAA
9._PA_156_[PER]
__GG_CG____ATAA_GGAA
10._PA_186_[PER]
__GGCCCG____ATAA_GGAA
11._PA_156_[PER]
__GG_CG____ATAA_GGAA
12._PA_156_[PER]
__GG_CG____ATAA_GGAA
13._GC-05-137-3-39
AACCGGCCCGTTAATTGGATAACCGGAA
14._RUQ_1531
___CC____GG_AACCGG_
15._EET_400_[ECU]
__GG_CG____ATAA_GGAA
16._RUQ_1569
___CC____GG_AACCGG_
17._RUQ_1564
___CC____GG_AACCGG_
 2930313233343536373839404142
_Input profile
TTGTGGCGCCAGGGGGTTAGTTGGCCGG
1._GC-05-137-3-39
TTGTGGCGCCAGGGGGTTAGTTGGCCGG
2._GC-05-137-3-39
TTGTGGCGCCAGGGGGTTAGTTGGCCGG
3._GC-05-137-3-39
TTGTGGCGCCAGGGGGTTAGTTGGCCGG
4._PA_156_[PER]
___CG_AGGG__AG____
5._PA_156_[PER]
___CG_AGGG__AG____
6._PA_156_[PER]
___CG_AGGG__AG____
7._PA_156_[PER]
___CG_AGGG__AG____
8._RUQ_1531
___CG_AGGG__AG____
9._PA_156_[PER]
___CG_AGGG__AG____
10._PA_186_[PER]
___CG_AGGG__AG____
11._PA_156_[PER]
___CG_AGGG__AG____
12._PA_156_[PER]
___CG_AGGG__AG____
13._GC-05-137-3-39
TTGTGGCGCCAGGGGGTTAGTTAGCCGG
14._RUQ_1531
__GGCGCCAGGG__AGTT__GG
15._EET_400_[ECU]
___GG_AGGG__AG____
16._RUQ_1569
__GGCGCCAGGG__AGTT__GG
17._RUQ_1564
__GGCGCCAGGG__AGTT__GG
 4344454647484950515253545556
_Input profile
TTTTAAGGAACCCCGGAGGGTTCCCCTT
1._GC-05-137-3-39
TTTTAAGGAACCCCGGAGGGTTCCCCTT
2._GC-05-137-3-39
TTTTAAGGAACCCCGGAGGGTTCCCCTT
3._GC-05-137-3-39
TTTTAAGGAACCCCGGAGGGTT_CCTT
4._PA_156_[PER]
_TT_________CCCC_
5._PA_156_[PER]
_TT_________CCCC_
6._PA_156_[PER]
_TT_________CCCC_
7._PA_156_[PER]
_TT_________CCCC_
8._RUQ_1531
_TT_________CCCC_
9._PA_156_[PER]
_TT_________CCCC_
10._PA_186_[PER]
_TT_________CCCC_
11._PA_156_[PER]
_TT__________CC_
12._PA_156_[PER]
_TT_________CCCC_
13._GC-05-137-3-39
TTTTAAGGAACCCCGGAGGGTTCCCCTT
14._RUQ_1531
TT__GG______TTCC_TT
15._EET_400_[ECU]
_TT_________CTCC_
16._RUQ_1569
TT__GG______CTCC_TT
17._RUQ_1564
TT__GG______CTCC_TT
 5758596061626364656667686970
_Input profile
AGCCCTCTAAGGGGACAATTGGGGCTCC
1._GC-05-137-3-39
AGCCCTCTAAGGGGACAATTGGGGCTCC
2._GC-05-137-3-39
AGCCCTCTAAGGGGACAATTGGGGCTCC
3._GC-05-137-3-39
AGCCCTCTAAGGGGACAATTGGGGCTCC
4._PA_156_[PER]
_CC_CTAAGG_ACAATTGG___
5._PA_156_[PER]
_CC_CTAAGG_ACAATTGG___
6._PA_156_[PER]
_CC_CTAAGG_ACAATTGG___
7._PA_156_[PER]
_CC_CTAAGG_ACAATTGG___
8._RUQ_1531
_CC_CTAAGG_ACAATTGG___
9._PA_156_[PER]
_CC_CTAAGG_ACAATTGG___
10._PA_186_[PER]
_CC_CTAAGG_ACAATT-___
11._PA_156_[PER]
_CC_CTAAGG_ACAATTGG___
12._PA_156_[PER]
___CTAAGG_ACAATTGG___
13._GC-05-137-3-39
AGCCCTCTAAGGGGACAATTGGGGCTCC
14._RUQ_1531
GGCCCTCTAA_GGACAATTGGGG__
15._EET_400_[ECU]
_CC_CCACGG_ACAATTGG___
16._RUQ_1569
-CCCTCCAA_GGACAGGTGGGG__
17._RUQ_1564
-CCCTCCAA_GGACAGGTGGGG__
 7172737475767778798081828384
_Input profile
AATTCCAGAAAAAGACGGCCATACTTCC
1._GC-05-137-3-39
AATTCCAGAAAAAGACGGCCATACTTCC
2._GC-05-137-3-39
AATTCCAGAAAAAGACGGCCATACTTCC
3._GC-05-137-3-39
AATTCCAGAAAAAGACGGCCATACTTCC
4._PA_156_[PER]
AATT_____ACGG___TTCC
5._PA_156_[PER]
AATT_____ACGG___TTCC
6._PA_156_[PER]
AATT_____ACGG___TTCC
7._PA_156_[PER]
AATT_____ACGG___TTCC
8._RUQ_1531
AATT_____ACGG___TTCC
9._PA_156_[PER]
AATT_____ACGG___TTCC
10._PA_186_[PER]
AATT_____ACGG___TTCC
11._PA_156_[PER]
AATT_____ACGG___TTCC
12._PA_156_[PER]
AATT_____ACGG___TTCC
13._GC-05-137-3-39
AATTCCAGAAAAAGACGGCCATACTTCC
14._RUQ_1531
_______ACGG__ACTT_
15._EET_400_[ECU]
AATT_____ACGG___TTCT
16._RUQ_1569
_______ACCG__AATT_
17._RUQ_1564
_______ACCG__AATT_
 858687888990919293     
_Input profile
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
1._GC-05-137-3-39
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
2._GC-05-137-3-39
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
3._GC-05-137-3-39
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
4._PA_156_[PER]
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
5._PA_156_[PER]
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
6._PA_156_[PER]
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
7._PA_156_[PER]
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
8._RUQ_1531
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
9._PA_156_[PER]
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
10._PA_186_[PER]
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
11._PA_156_[PER]
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
12._PA_156_[PER]
__AA_CCTTTT__X_XX_XX_XX_XX_X
13._GC-05-137-3-39
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
14._RUQ_1531
__AA-CCTT___X_XX_XX_XX_XX_X
15._EET_400_[ECU]
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
16._RUQ_1569
__AACCCCTT___X_XX_XX_XX_XX_X
17._RUQ_1564
__AACCCCTT___X_XX_XX_XX_XX_X

Input profile: PA_156_[PER] GC-05-137-3-39

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

1._PA_156_[PER] GC-05-137-3-39

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

2._PA_156_[PER] GC-05-137-3-39

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

3._PA_156_[PER] GC-05-137-3-39

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

4._PA_156_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 5 > FP
 Dapeng Zhang, 2016

5._PA_156_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 4 > FP
 Dapeng Zhang, 2016

6._PA_156_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 3 > FP
 Dapeng Zhang, 2016

7._PA_156_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 2
 Dapeng Zhang, 2016

8._PA_156_[PER] RUQ_1531

identical
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._PA_156_[PER]

identical
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row1 C0184 28
 Dapeng Zhang, 2016

10._PA_186_[PER]

identical
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 446
 Dapeng Zhang, 2014

11._PA_156_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

12._PA_156_[PER]

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D295 T1
 Dapeng Zhang, 2016

13._PA_156_[PER] GC-05-137-3-39

99.5 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

14._PA_156_[PER] RUQ_1531

98.8 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

15._EET_400_[ECU]

93.8 %
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot85/Trial II 2B
 Dapeng Zhang, 2016

16._CRUZ_7_/14 RUQ_1569

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._PA_71_[PER] RUQ_1564

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240