SNP Profiles matching PA 156 [PER]

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 Key

 1234567891011121314
_Input profile
AACCCCCCGGAGCTCCCCCCGGTTCCTT
1._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
2._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
3._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
4._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
5._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
6._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
7._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
8._RUQ_1531
AACCCCCC________CCCCGG__CC__
9._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
10._PA_186_[PER]
AACCCCCC________CCCCGG__CC__
11._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
12._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
13._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
14._RUQ_1531
____CCCC____CT__CC____TTCC__
15._EET_400_[ECU]
AACCCCCC________CCCCGG__CC__
16._RUQ_1569
____CTCC____CT__CC____TTCC__
17._RUQ_1564
____CTCC____CT__CC____TTCC__
 1516171819202122232425262728
_Input profile
AACCGGCCCGTTAATTGGATAACCGGAA
1._GC-05-137-3-39
AACCGGCCCGTTAATTGGATAACCGGAA
2._GC-05-137-3-39
AACCGGCCCGTTAATTGGATAACCGGAA
3._GC-05-137-3-39
AACCGGCCCGTTAATTGGATAACCGGAA
4._PA_156_[PER]
____GG__CG________ATAA__GGAA
5._PA_156_[PER]
____GG__CG________ATAA__GGAA
6._PA_156_[PER]
____GG__CG________ATAA__GGAA
7._PA_156_[PER]
____GG__CG________ATAA__GGAA
8._RUQ_1531
____GG__CG________ATAA__GGAA
9._PA_156_[PER]
____GG__CG________ATAA__GGAA
10._PA_186_[PER]
____GGCCCG________ATAA__GGAA
11._PA_156_[PER]
____GG__CG________ATAA__GGAA
12._PA_156_[PER]
____GG__CG________ATAA__GGAA
13._GC-05-137-3-39
AACCGGCCCGTTAATTGGATAACCGGAA
14._RUQ_1531
______CC________GG__AACCGG__
15._EET_400_[ECU]
____GG__CG________ATAA__GGAA
16._RUQ_1569
______CC________GG__AACCGG__
17._RUQ_1564
______CC________GG__AACCGG__
 2930313233343536373839404142
_Input profile
TTGTGGCGCCAGGGGGTTAGTTGGCCGG
1._GC-05-137-3-39
TTGTGGCGCCAGGGGGTTAGTTGGCCGG
2._GC-05-137-3-39
TTGTGGCGCCAGGGGGTTAGTTGGCCGG
3._GC-05-137-3-39
TTGTGGCGCCAGGGGGTTAGTTGGCCGG
4._PA_156_[PER]
______CG__AGGG____AG________
5._PA_156_[PER]
______CG__AGGG____AG________
6._PA_156_[PER]
______CG__AGGG____AG________
7._PA_156_[PER]
______CG__AGGG____AG________
8._RUQ_1531
______CG__AGGG____AG________
9._PA_156_[PER]
______CG__AGGG____AG________
10._PA_186_[PER]
______CG__AGGG____AG________
11._PA_156_[PER]
______CG__AGGG____AG________
12._PA_156_[PER]
______CG__AGGG____AG________
13._GC-05-137-3-39
TTGTGGCGCCAGGGGGTTAGTTAGCCGG
14._RUQ_1531
____GGCGCCAGGG____AGTT____GG
15._EET_400_[ECU]
______GG__AGGG____AG________
16._RUQ_1569
____GGCGCCAGGG____AGTT____GG
17._RUQ_1564
____GGCGCCAGGG____AGTT____GG
 4344454647484950515253545556
_Input profile
TTTTAAGGAACCCCGGAGGGTTCCCCTT
1._GC-05-137-3-39
TTTTAAGGAACCCCGGAGGGTTCCCCTT
2._GC-05-137-3-39
TTTTAAGGAACCCCGGAGGGTTCCCCTT
3._GC-05-137-3-39
TTTTAAGGAACCCCGGAGGGTT__CCTT
4._PA_156_[PER]
__TT__________________CCCC__
5._PA_156_[PER]
__TT__________________CCCC__
6._PA_156_[PER]
__TT__________________CCCC__
7._PA_156_[PER]
__TT__________________CCCC__
8._RUQ_1531
__TT__________________CCCC__
9._PA_156_[PER]
__TT__________________CCCC__
10._PA_186_[PER]
__TT__________________CCCC__
11._PA_156_[PER]
__TT____________________CC__
12._PA_156_[PER]
__TT__________________CCCC__
13._GC-05-137-3-39
TTTTAAGGAACCCCGGAGGGTTCCCCTT
14._RUQ_1531
TT____GG____________TTCC__TT
15._EET_400_[ECU]
__TT__________________CTCC__
16._RUQ_1569
TT____GG____________CTCC__TT
17._RUQ_1564
TT____GG____________CTCC__TT
 5758596061626364656667686970
_Input profile
AGCCCTCTAAGGGGACAATTGGGGCTCC
1._GC-05-137-3-39
AGCCCTCTAAGGGGACAATTGGGGCTCC
2._GC-05-137-3-39
AGCCCTCTAAGGGGACAATTGGGGCTCC
3._GC-05-137-3-39
AGCCCTCTAAGGGGACAATTGGGGCTCC
4._PA_156_[PER]
__CC__CTAAGG__ACAATTGG______
5._PA_156_[PER]
__CC__CTAAGG__ACAATTGG______
6._PA_156_[PER]
__CC__CTAAGG__ACAATTGG______
7._PA_156_[PER]
__CC__CTAAGG__ACAATTGG______
8._RUQ_1531
__CC__CTAAGG__ACAATTGG______
9._PA_156_[PER]
__CC__CTAAGG__ACAATTGG______
10._PA_186_[PER]
__CC__CTAAGG__ACAATT________
11._PA_156_[PER]
__CC__CTAAGG__ACAATTGG______
12._PA_156_[PER]
______CTAAGG__ACAATTGG______
13._GC-05-137-3-39
AGCCCTCTAAGGGGACAATTGGGGCTCC
14._RUQ_1531
GGCCCTCTAA__GGACAATTGGGG____
15._EET_400_[ECU]
__CC__CCACGG__ACAATTGG______
16._RUQ_1569
__CCCTCCAA__GGACAGGTGGGG____
17._RUQ_1564
__CCCTCCAA__GGACAGGTGGGG____
 7172737475767778798081828384
_Input profile
AATTCCAGAAAAAGACGGCCATACTTCC
1._GC-05-137-3-39
AATTCCAGAAAAAGACGGCCATACTTCC
2._GC-05-137-3-39
AATTCCAGAAAAAGACGGCCATACTTCC
3._GC-05-137-3-39
AATTCCAGAAAAAGACGGCCATACTTCC
4._PA_156_[PER]
AATT__________ACGG______TTCC
5._PA_156_[PER]
AATT__________ACGG______TTCC
6._PA_156_[PER]
AATT__________ACGG______TTCC
7._PA_156_[PER]
AATT__________ACGG______TTCC
8._RUQ_1531
AATT__________ACGG______TTCC
9._PA_156_[PER]
AATT__________ACGG______TTCC
10._PA_186_[PER]
AATT__________ACGG______TTCC
11._PA_156_[PER]
AATT__________ACGG______TTCC
12._PA_156_[PER]
AATT__________ACGG______TTCC
13._GC-05-137-3-39
AATTCCAGAAAAAGACGGCCATACTTCC
14._RUQ_1531
______________ACGG____ACTT__
15._EET_400_[ECU]
AATT__________ACGG______TTCT
16._RUQ_1569
______________ACCG____AATT__
17._RUQ_1564
______________ACCG____AATT__
 858687888990919293     
_Input profile
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
1._GC-05-137-3-39
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
2._GC-05-137-3-39
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
3._GC-05-137-3-39
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
4._PA_156_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
5._PA_156_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
6._PA_156_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
7._PA_156_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
8._RUQ_1531
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
9._PA_156_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
10._PA_186_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
11._PA_156_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
12._PA_156_[PER]
____AA__CCTTTT____X_XX_XX_XX_XX_X
13._GC-05-137-3-39
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
14._RUQ_1531
____AA__CCTT______X_XX_XX_XX_XX_X
15._EET_400_[ECU]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
16._RUQ_1569
____AACCCCTT______X_XX_XX_XX_XX_X
17._RUQ_1564
____AACCCCTT______X_XX_XX_XX_XX_X

Input profile: PA_156_[PER] GC-05-137-3-39

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

1._PA_156_[PER] GC-05-137-3-39

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

2._PA_156_[PER] GC-05-137-3-39

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

3._PA_156_[PER] GC-05-137-3-39

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

4._PA_156_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 5 > FP
 Dapeng Zhang, 2016

5._PA_156_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 4 > FP
 Dapeng Zhang, 2016

6._PA_156_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 3 > FP
 Dapeng Zhang, 2016

7._PA_156_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 2
 Dapeng Zhang, 2016

8._PA_156_[PER] RUQ_1531

identical
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._PA_156_[PER]

identical
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row1 C0184 28
 Dapeng Zhang, 2016

10._PA_186_[PER]

identical
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 446
 Dapeng Zhang, 2014

11._PA_156_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

12._PA_156_[PER]

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D295 T1
 Dapeng Zhang, 2016

13._PA_156_[PER] GC-05-137-3-39

99.5 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

14._PA_156_[PER] RUQ_1531

98.8 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

15._EET_400_[ECU]

93.8 %
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot85/Trial II 2B
 Dapeng Zhang, 2016

16._CRUZ_7_/14 RUQ_1569

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._PA_71_[PER] RUQ_1564

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240