SNP Profiles matching PA 156 [PER]

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 Key

 1234567891011121314
_Input profile
AACCCCCCGGAGCTCCCCCCGGTTCCTT
1._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
2._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
3._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
4._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
5._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
6._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
7._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
8._RUQ_1531
AACCCCCC________CCCCGG__CC__
9._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
10._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
11._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
12._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
13._RUQ_1531
____CCCC____CT__CC____TTCC__
14._PA_186_[PER]
AACCCCCC________CCCCGG__CC__
15._EET_400_[ECU]
AACCCCCC________CCCCGG__CC__
16._RUQ_1569
____CTCC____CT__CC____TTCC__
17._RUQ_1564
____CTCC____CT__CC____TTCC__
 1516171819202122232425262728
_Input profile
AACCGGCCCCCGTTAATTGGATAACCGG
1._GC-05-137-3-39
AACCGGCCCCCGTTAATTGGATAACCGG
2._GC-05-137-3-39
AACCGGCCCCCGTTAATTGGATAACCGG
3._GC-05-137-3-39
AACCGG__CCCGTTAATTGGATAACCGG
4._PA_156_[PER]
____GG____CG________ATAA__GG
5._PA_156_[PER]
____GG____CG________ATAA__GG
6._PA_156_[PER]
____GG____CG________ATAA__GG
7._PA_156_[PER]
____GG____CG________ATAA__GG
8._RUQ_1531
____GG____CG________ATAA__GG
9._PA_156_[PER]
____GG____CG________ATAA__GG
10._PA_156_[PER]
____GG____CG________ATAA__GG
11._PA_156_[PER]
____GG____CG________ATAA__GG
12._GC-05-137-3-39
AACCGGCCCCCGTTAATTGGATAACCGG
13._RUQ_1531
________CC________GG__AACCGG
14._PA_186_[PER]
____GGTTCCCG________ATAA__GG
15._EET_400_[ECU]
____GG____CG________ATAA__GG
16._RUQ_1569
________CC________GG__AACCGG
17._RUQ_1564
________CC________GG__AACCGG
 2930313233343536373839404142
_Input profile
AATTGTGGCGCCAGGGGGTTAGTTGGCC
1._GC-05-137-3-39
AATTGTGGCGCCAGGGGGTTAGTTGGCC
2._GC-05-137-3-39
AATTGTGGCGCCAGGGGGTTAGTTGGCC
3._GC-05-137-3-39
AATTGTGGCGCCAGGGGGTTAGTTGGCC
4._PA_156_[PER]
AA______CG__AGGG____AG______
5._PA_156_[PER]
AA______CG__AGGG____AG______
6._PA_156_[PER]
AA______CG__AGGG____AG______
7._PA_156_[PER]
AA______CG__AGGG____AG______
8._RUQ_1531
AA______CG__AGGG____AG______
9._PA_156_[PER]
AA______CG__AGGG____AG______
10._PA_156_[PER]
AA______CG__AGGG____AG______
11._PA_156_[PER]
AA______CG__AGGG____AG______
12._GC-05-137-3-39
AATTGTGGCGCCAGGGGGTTAGTTAGCC
13._RUQ_1531
______GGCGCCAGGG____AGTT____
14._PA_186_[PER]
AA______CG__AGGG____AG______
15._EET_400_[ECU]
AA______GG__AGGG____AG______
16._RUQ_1569
______GGCGCCAGGG____AGTT____
17._RUQ_1564
______GGCGCCAGGG____AGTT____
 4344454647484950515253545556
_Input profile
GGTTTTAAGGAACCCCGGAGGGTTCCCC
1._GC-05-137-3-39
GGTTTTAAGGAACCCCGGAGGGTTCCCC
2._GC-05-137-3-39
GGTTTTAAGGAACCCCGGAGGGTT__CC
3._GC-05-137-3-39
GGTTTTAAGGAACCCCGGAGGGTTCCCC
4._PA_156_[PER]
____TT__________________CCCC
5._PA_156_[PER]
____TT__________________CCCC
6._PA_156_[PER]
____TT__________________CCCC
7._PA_156_[PER]
____TT__________________CCCC
8._RUQ_1531
____TT__________________CCCC
9._PA_156_[PER]
____TT__________________CCCC
10._PA_156_[PER]
____TT____________________CC
11._PA_156_[PER]
____TT__________________CCCC
12._GC-05-137-3-39
GGTTTTAAGGAACCCCGGAGGGTTCCCC
13._RUQ_1531
GGTT____GG____________TTCC__
14._PA_186_[PER]
____TT__________________CCCC
15._EET_400_[ECU]
____TT__________________CTCC
16._RUQ_1569
GGTT____GG____________CTCC__
17._RUQ_1564
GGTT____GG____________CTCC__
 5758596061626364656667686970
_Input profile
TTAGCCCTCTAAGGGGACAATTGGGGCT
1._GC-05-137-3-39
TTAGCCCTCTAAGGGGACAATTGGGGCT
2._GC-05-137-3-39
TTAGCCCTCTAAGGGGACAATTGGGGCT
3._GC-05-137-3-39
TTAGCCCTCTAAGGGGACAATTGGGGCT
4._PA_156_[PER]
____CC__CTAAGG__ACAATTGG____
5._PA_156_[PER]
____CC__CTAAGG__ACAATTGG____
6._PA_156_[PER]
____CC__CTAAGG__ACAATTGG____
7._PA_156_[PER]
____CC__CTAAGG__ACAATTGG____
8._RUQ_1531
____CC__CTAAGG__ACAATTGG____
9._PA_156_[PER]
____CC__CTAAGG__ACAATTGG____
10._PA_156_[PER]
____CC__CTAAGG__ACAATTGG____
11._PA_156_[PER]
________CTAAGG__ACAATTGG____
12._GC-05-137-3-39
TTAGCCCTCTAAGGGGACAATTGGGGCT
13._RUQ_1531
TTGGCCCTCTAA__GGACAATTGGGG__
14._PA_186_[PER]
____CC__CTAAGG__ACAATT______
15._EET_400_[ECU]
____CC__CCACGG__ACAATTGG____
16._RUQ_1569
TT__CCCTCCAA__GGACAGGTGGGG__
17._RUQ_1564
TT__CCCTCCAA__GGACAGGTGGGG__
 7172737475767778798081828384
_Input profile
CCAATTCCAGAAAAAGACGGCCATACTT
1._GC-05-137-3-39
CCAATTCCAGAAAAAGACGGCCATACTT
2._GC-05-137-3-39
CCAATTCCAGAAAAAGACGGCCATACTT
3._GC-05-137-3-39
CCAATTCCAGAAAAAGACGGCCATACTT
4._PA_156_[PER]
__AATT__________ACGG______TT
5._PA_156_[PER]
__AATT__________ACGG______TT
6._PA_156_[PER]
__AATT__________ACGG______TT
7._PA_156_[PER]
__AATT__________ACGG______TT
8._RUQ_1531
__AATT__________ACGG______TT
9._PA_156_[PER]
__AATT__________ACGG______TT
10._PA_156_[PER]
__AATT__________ACGG______TT
11._PA_156_[PER]
__AATT__________ACGG______TT
12._GC-05-137-3-39
CCAATTCCAGAAAAAGACGGCCATACTT
13._RUQ_1531
________________ACGG____ACTT
14._PA_186_[PER]
__AATT__________ACGG______TT
15._EET_400_[ECU]
__AATT__________ACGG______TT
16._RUQ_1569
________________ACCG____AATT
17._RUQ_1564
________________ACCG____AATT
 85868788899091929394    
_Input profile
CCCCCTAACTCCTTTTAAGGX_XX_XX_XX_X
1._GC-05-137-3-39
CCCCCTAACTCCTTTTAAGGX_XX_XX_XX_X
2._GC-05-137-3-39
CCCCCTAACTCCTTTTAAGGX_XX_XX_XX_X
3._GC-05-137-3-39
CCCCCTAACTCCTTTTAAGGX_XX_XX_XX_X
4._PA_156_[PER]
CCCC__AA__CCTTTT____X_XX_XX_XX_X
5._PA_156_[PER]
CCCC__AA__CCTTTT____X_XX_XX_XX_X
6._PA_156_[PER]
CCCC__AA__CCTTTT____X_XX_XX_XX_X
7._PA_156_[PER]
CCCC__AA__CCTTTT____X_XX_XX_XX_X
8._RUQ_1531
CCCC__AA__CCTTTT____X_XX_XX_XX_X
9._PA_156_[PER]
CCCC__AA__CCTTTT____X_XX_XX_XX_X
10._PA_156_[PER]
CCCC__AA__CCTTTT____X_XX_XX_XX_X
11._PA_156_[PER]
CC____AA__CCTTTT____X_XX_XX_XX_X
12._GC-05-137-3-39
CCCCCTAACTCCTTTTAAGGX_XX_XX_XX_X
13._RUQ_1531
______AA__CCTT______X_XX_XX_XX_X
14._PA_186_[PER]
CCCC__AA__CCTTTT____X_XX_XX_XX_X
15._EET_400_[ECU]
CTCC__AA__CCTTTT____X_XX_XX_XX_X
16._RUQ_1569
______AACCCCTT______X_XX_XX_XX_X
17._RUQ_1564
______AACCCCTT______X_XX_XX_XX_X

Input profile: PA_156_[PER] GC-05-137-3-39

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

1._PA_156_[PER] GC-05-137-3-39

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

2._PA_156_[PER] GC-05-137-3-39

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

3._PA_156_[PER] GC-05-137-3-39

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

4._PA_156_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 5 > FP
 Dapeng Zhang, 2016

5._PA_156_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 4 > FP
 Dapeng Zhang, 2016

6._PA_156_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 3 > FP
 Dapeng Zhang, 2016

7._PA_156_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 2
 Dapeng Zhang, 2016

8._PA_156_[PER] RUQ_1531

identical
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._PA_156_[PER]

identical
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row1 C0184 28
 Dapeng Zhang, 2016

10._PA_156_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

11._PA_156_[PER]

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D295 T1
 Dapeng Zhang, 2016

12._PA_156_[PER] GC-05-137-3-39

99.5 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

13._PA_156_[PER] RUQ_1531

98.8 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

14._PA_186_[PER]

97.6 %
41 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 446
 Dapeng Zhang, 2014

15._EET_400_[ECU]

93.8 %
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot85/Trial II 2B
 Dapeng Zhang, 2016

16._CRUZ_7_/14 RUQ_1569

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._PA_71_[PER] RUQ_1564

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240