SNP Profiles matching PA-156

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCCCCCGGAGCTCCCCCCGGTTCCTT
1._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
2._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
3._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
4._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
5._RUQ_1531
AACCCCCC________CCCCGG__CC__
6._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
7._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
8._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
9._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
10._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
11._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
12._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
13._RUQ_1531
____CCCC____CT__CC____TTCC__
14._PA_186_[PER]
AACCCCCC________CCCCGG__CC__
15._EET_400_[ECU]
AACCCCCC________CCCCGG__CC__
16._RUQ_1569
____CTCC____CT__CC____TTCC__
17._RUQ_1564
____CTCC____CT__CC____TTCC__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCGGCCCCCGTTAATTGGATAACCGG
1._PA_156_[PER]
____GG____CG________ATAA__GG
2._PA_156_[PER]
____GG____CG________ATAA__GG
3._PA_156_[PER]
____GG____CG________ATAA__GG
4._PA_156_[PER]
____GG____CG________ATAA__GG
5._RUQ_1531
____GG____CG________ATAA__GG
6._PA_156_[PER]
____GG____CG________ATAA__GG
7._PA_156_[PER]
____GG____CG________ATAA__GG
8._PA_156_[PER]
____GG____CG________ATAA__GG
9._GC-05-137-3-39
AACCGGCCCCCGTTAATTGGATAACCGG
10._GC-05-137-3-39
AACCGGCCCCCGTTAATTGGATAACCGG
11._GC-05-137-3-39
AACCGGCCCCCGTTAATTGGATAACCGG
12._GC-05-137-3-39
AACCGG__CCCGTTAATTGGATAACCGG
13._RUQ_1531
________CC________GG__AACCGG
14._PA_186_[PER]
____GGTTCCCG________ATAA__GG
15._EET_400_[ECU]
____GG____CG________ATAA__GG
16._RUQ_1569
________CC________GG__AACCGG
17._RUQ_1564
________CC________GG__AACCGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGTGGCGCCAGGGGGTTAGTTAGCC
1._PA_156_[PER]
AA______CG__AGGG____AG______
2._PA_156_[PER]
AA______CG__AGGG____AG______
3._PA_156_[PER]
AA______CG__AGGG____AG______
4._PA_156_[PER]
AA______CG__AGGG____AG______
5._RUQ_1531
AA______CG__AGGG____AG______
6._PA_156_[PER]
AA______CG__AGGG____AG______
7._PA_156_[PER]
AA______CG__AGGG____AG______
8._PA_156_[PER]
AA______CG__AGGG____AG______
9._GC-05-137-3-39
AATTGTGGCGCCAGGGGGTTAGTTGGCC
10._GC-05-137-3-39
AATTGTGGCGCCAGGGGGTTAGTTGGCC
11._GC-05-137-3-39
AATTGTGGCGCCAGGGGGTTAGTTGGCC
12._GC-05-137-3-39
AATTGTGGCGCCAGGGGGTTAGTTGGCC
13._RUQ_1531
______GGCGCCAGGG____AGTT____
14._PA_186_[PER]
AA______CG__AGGG____AG______
15._EET_400_[ECU]
AA______GG__AGGG____AG______
16._RUQ_1569
______GGCGCCAGGG____AGTT____
17._RUQ_1564
______GGCGCCAGGG____AGTT____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTTTAAGGAACCCCGGAGGGTTCCCC
1._PA_156_[PER]
____TT__________________CCCC
2._PA_156_[PER]
____TT__________________CCCC
3._PA_156_[PER]
____TT__________________CCCC
4._PA_156_[PER]
____TT__________________CCCC
5._RUQ_1531
____TT__________________CCCC
6._PA_156_[PER]
____TT__________________CCCC
7._PA_156_[PER]
____TT____________________CC
8._PA_156_[PER]
____TT__________________CCCC
9._GC-05-137-3-39
GGTTTTAAGGAACCCCGGAGGGTTCCCC
10._GC-05-137-3-39
GGTTTTAAGGAACCCCGGAGGGTTCCCC
11._GC-05-137-3-39
GGTTTTAAGGAACCCCGGAGGGTT__CC
12._GC-05-137-3-39
GGTTTTAAGGAACCCCGGAGGGTTCCCC
13._RUQ_1531
GGTT____GG____________TTCC__
14._PA_186_[PER]
____TT__________________CCCC
15._EET_400_[ECU]
____TT__________________CTCC
16._RUQ_1569
GGTT____GG____________CTCC__
17._RUQ_1564
GGTT____GG____________CTCC__
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTAGCCCTCTAAGGGGACAATTGGGGCT
1._PA_156_[PER]
____CC__CTAAGG__ACAATTGG____
2._PA_156_[PER]
____CC__CTAAGG__ACAATTGG____
3._PA_156_[PER]
____CC__CTAAGG__ACAATTGG____
4._PA_156_[PER]
____CC__CTAAGG__ACAATTGG____
5._RUQ_1531
____CC__CTAAGG__ACAATTGG____
6._PA_156_[PER]
____CC__CTAAGG__ACAATTGG____
7._PA_156_[PER]
____CC__CTAAGG__ACAATTGG____
8._PA_156_[PER]
________CTAAGG__ACAATTGG____
9._GC-05-137-3-39
TTAGCCCTCTAAGGGGACAATTGGGGCT
10._GC-05-137-3-39
TTAGCCCTCTAAGGGGACAATTGGGGCT
11._GC-05-137-3-39
TTAGCCCTCTAAGGGGACAATTGGGGCT
12._GC-05-137-3-39
TTAGCCCTCTAAGGGGACAATTGGGGCT
13._RUQ_1531
TTGGCCCTCTAA__GGACAATTGGGG__
14._PA_186_[PER]
____CC__CTAAGG__ACAATT______
15._EET_400_[ECU]
____CC__CCACGG__ACAATTGG____
16._RUQ_1569
TT__CCCTCCAA__GGACAGGTGGGG__
17._RUQ_1564
TT__CCCTCCAA__GGACAGGTGGGG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCAATTCCAGAAAAAGACGGCCATACTT
1._PA_156_[PER]
__AATT__________ACGG______TT
2._PA_156_[PER]
__AATT__________ACGG______TT
3._PA_156_[PER]
__AATT__________ACGG______TT
4._PA_156_[PER]
__AATT__________ACGG______TT
5._RUQ_1531
__AATT__________ACGG______TT
6._PA_156_[PER]
__AATT__________ACGG______TT
7._PA_156_[PER]
__AATT__________ACGG______TT
8._PA_156_[PER]
__AATT__________ACGG______TT
9._GC-05-137-3-39
CCAATTCCAGAAAAAGACGGCCATACTT
10._GC-05-137-3-39
CCAATTCCAGAAAAAGACGGCCATACTT
11._GC-05-137-3-39
CCAATTCCAGAAAAAGACGGCCATACTT
12._GC-05-137-3-39
CCAATTCCAGAAAAAGACGGCCATACTT
13._RUQ_1531
________________ACGG____ACTT
14._PA_186_[PER]
__AATT__________ACGG______TT
15._EET_400_[ECU]
__AATT__________ACGG______TT
16._RUQ_1569
________________ACCG____AATT
17._RUQ_1564
________________ACCG____AATT
 85 86 87 88 89 90 91 92 93 94     
_Input profile
CCCCCTAACTCCTTTTAAGGX_XX_XX_XX_X
1._PA_156_[PER]
CCCC__AA__CCTTTT____X_XX_XX_XX_X
2._PA_156_[PER]
CCCC__AA__CCTTTT____X_XX_XX_XX_X
3._PA_156_[PER]
CCCC__AA__CCTTTT____X_XX_XX_XX_X
4._PA_156_[PER]
CCCC__AA__CCTTTT____X_XX_XX_XX_X
5._RUQ_1531
CCCC__AA__CCTTTT____X_XX_XX_XX_X
6._PA_156_[PER]
CCCC__AA__CCTTTT____X_XX_XX_XX_X
7._PA_156_[PER]
CCCC__AA__CCTTTT____X_XX_XX_XX_X
8._PA_156_[PER]
CC____AA__CCTTTT____X_XX_XX_XX_X
9._GC-05-137-3-39
CCCCCTAACTCCTTTTAAGGX_XX_XX_XX_X
10._GC-05-137-3-39
CCCCCTAACTCCTTTTAAGGX_XX_XX_XX_X
11._GC-05-137-3-39
CCCCCTAACTCCTTTTAAGGX_XX_XX_XX_X
12._GC-05-137-3-39
CCCCCTAACTCCTTTTAAGGX_XX_XX_XX_X
13._RUQ_1531
______AA__CCTT______X_XX_XX_XX_X
14._PA_186_[PER]
CCCC__AA__CCTTTT____X_XX_XX_XX_X
15._EET_400_[ECU]
CTCC__AA__CCTTTT____X_XX_XX_XX_X
16._RUQ_1569
______AACCCCTT______X_XX_XX_XX_X
17._RUQ_1564
______AACCCCTT______X_XX_XX_XX_X

Input profile: PA_156_[PER] GC-05-137-3-39

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 3