SNP Profiles matching PA 156/T1

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCCCCCGGAGCTCCCCCCGGTTCCTT
1._PA_156_[PER]___
AACCCCCC________CCCCGG__CC__
2._PA_156_[PER]___
AACCCCCC________CCCCGG__CC__
3._PA_156_[PER]___
AACCCCCC________CCCCGG__CC__
4._PA_156_[PER]___
AACCCCCC________CCCCGG__CC__
5._PA_156_[PER]___
AACCCCCC________CCCCGG__CC__
6._PA_156_[PER]___
AACCCCCC________CCCCGG__CC__
7._PA_156_[PER]___
AACCCCCC________CCCCGG__CC__
8._PA_156_[PER]___
AACCCCCC________CCCCGG__CC__
9._PA_156_[PER]___
AACCCCCCGGAGCTCCCCCCGGTTCCTT
10._PA_156_[PER]___
AACCCCCCGGAGCTCCCCCCGGTTCCTT
11._PA_156_[PER]___
AACCCCCCGGAGCTCCCCCCGGTTCCTT
12._PA_156_[PER]___
AACCCCCCGGAGCTCCCCCCGGTTCCTT
13._PA_156_[PER]___
____CCCC____CT__CC____TTCC__
14._PA_186_[PER]___
AACCCCCC________CCCCGG__CC__
15._EET_400_[ECU]___
AACCCCCC________CCCCGG__CC__
16._CRUZ_7_/14___
____CTCC____CT__CC____TTCC__
17._PA_71_[PER]___
____CTCC____CT__CC____TTCC__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCGGCCCCCGTTAATTGGATAACCGG
1._PA_156_[PER]___
____GG____CG________ATAA__GG
2._PA_156_[PER]___
____GG____CG________ATAA__GG
3._PA_156_[PER]___
____GG____CG________ATAA__GG
4._PA_156_[PER]___
____GG____CG________ATAA__GG
5._PA_156_[PER]___
____GG____CG________ATAA__GG
6._PA_156_[PER]___
____GG____CG________ATAA__GG
7._PA_156_[PER]___
____GG____CG________ATAA__GG
8._PA_156_[PER]___
____GG____CG________ATAA__GG
9._PA_156_[PER]___
AACCGGCCCCCGTTAATTGGATAACCGG
10._PA_156_[PER]___
AACCGGCCCCCGTTAATTGGATAACCGG
11._PA_156_[PER]___
AACCGGCCCCCGTTAATTGGATAACCGG
12._PA_156_[PER]___
AACCGG__CCCGTTAATTGGATAACCGG
13._PA_156_[PER]___
________CC________GG__AACCGG
14._PA_186_[PER]___
____GGTTCCCG________ATAA__GG
15._EET_400_[ECU]___
____GG____CG________ATAA__GG
16._CRUZ_7_/14___
________CC________GG__AACCGG
17._PA_71_[PER]___
________CC________GG__AACCGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGTGGCGCCAGGGGGTTAGTTAGCC
1._PA_156_[PER]___
AA______CG__AGGG____AG______
2._PA_156_[PER]___
AA______CG__AGGG____AG______
3._PA_156_[PER]___
AA______CG__AGGG____AG______
4._PA_156_[PER]___
AA______CG__AGGG____AG______
5._PA_156_[PER]___
AA______CG__AGGG____AG______
6._PA_156_[PER]___
AA______CG__AGGG____AG______
7._PA_156_[PER]___
AA______CG__AGGG____AG______
8._PA_156_[PER]___
AA______CG__AGGG____AG______
9._PA_156_[PER]___
AATTGTGGCGCCAGGGGGTTAGTTGGCC
10._PA_156_[PER]___
AATTGTGGCGCCAGGGGGTTAGTTGGCC
11._PA_156_[PER]___
AATTGTGGCGCCAGGGGGTTAGTTGGCC
12._PA_156_[PER]___
AATTGTGGCGCCAGGGGGTTAGTTGGCC
13._PA_156_[PER]___
______GGCGCCAGGG____AGTT____
14._PA_186_[PER]___
AA______CG__AGGG____AG______
15._EET_400_[ECU]___
AA______GG__AGGG____AG______
16._CRUZ_7_/14___
______GGCGCCAGGG____AGTT____
17._PA_71_[PER]___
______GGCGCCAGGG____AGTT____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTTTAAGGAACCCCGGAGGGTTCCCC
1._PA_156_[PER]___
____TT__________________CCCC
2._PA_156_[PER]___
____TT__________________CCCC
3._PA_156_[PER]___
____TT__________________CCCC
4._PA_156_[PER]___
____TT__________________CCCC
5._PA_156_[PER]___
____TT__________________CCCC
6._PA_156_[PER]___
____TT__________________CCCC
7._PA_156_[PER]___
____TT____________________CC
8._PA_156_[PER]___
____TT__________________CCCC
9._PA_156_[PER]___
GGTTTTAAGGAACCCCGGAGGGTTCCCC
10._PA_156_[PER]___
GGTTTTAAGGAACCCCGGAGGGTTCCCC
11._PA_156_[PER]___
GGTTTTAAGGAACCCCGGAGGGTT__CC
12._PA_156_[PER]___
GGTTTTAAGGAACCCCGGAGGGTTCCCC
13._PA_156_[PER]___
GGTT____GG____________TTCC__
14._PA_186_[PER]___
____TT__________________CCCC
15._EET_400_[ECU]___
____TT__________________CTCC
16._CRUZ_7_/14___
GGTT____GG____________CTCC__
17._PA_71_[PER]___
GGTT____GG____________CTCC__
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTAGCCCTCTAAGGGGACAATTGGGGCT
1._PA_156_[PER]___
____CC__CTAAGG__ACAATTGG____
2._PA_156_[PER]___
____CC__CTAAGG__ACAATTGG____
3._PA_156_[PER]___
____CC__CTAAGG__ACAATTGG____
4._PA_156_[PER]___
____CC__CTAAGG__ACAATTGG____
5._PA_156_[PER]___
____CC__CTAAGG__ACAATTGG____
6._PA_156_[PER]___
____CC__CTAAGG__ACAATTGG____
7._PA_156_[PER]___
____CC__CTAAGG__ACAATTGG____
8._PA_156_[PER]___
________CTAAGG__ACAATTGG____
9._PA_156_[PER]___
TTAGCCCTCTAAGGGGACAATTGGGGCT
10._PA_156_[PER]___
TTAGCCCTCTAAGGGGACAATTGGGGCT
11._PA_156_[PER]___
TTAGCCCTCTAAGGGGACAATTGGGGCT
12._PA_156_[PER]___
TTAGCCCTCTAAGGGGACAATTGGGGCT
13._PA_156_[PER]___
TTGGCCCTCTAA__GGACAATTGGGG__
14._PA_186_[PER]___
____CC__CTAAGG__ACAATT______
15._EET_400_[ECU]___
____CC__CCACGG__ACAATTGG____
16._CRUZ_7_/14___
TT__CCCTCCAA__GGACAGGTGGGG__
17._PA_71_[PER]___
TT__CCCTCCAA__GGACAGGTGGGG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCAATTCCAGAAAAAGACGGCCATACTT
1._PA_156_[PER]___
__AATT__________ACGG______TT
2._PA_156_[PER]___
__AATT__________ACGG______TT
3._PA_156_[PER]___
__AATT__________ACGG______TT
4._PA_156_[PER]___
__AATT__________ACGG______TT
5._PA_156_[PER]___
__AATT__________ACGG______TT
6._PA_156_[PER]___
__AATT__________ACGG______TT
7._PA_156_[PER]___
__AATT__________ACGG______TT
8._PA_156_[PER]___
__AATT__________ACGG______TT
9._PA_156_[PER]___
CCAATTCCAGAAAAAGACGGCCATACTT
10._PA_156_[PER]___
CCAATTCCAGAAAAAGACGGCCATACTT
11._PA_156_[PER]___
CCAATTCCAGAAAAAGACGGCCATACTT
12._PA_156_[PER]___
CCAATTCCAGAAAAAGACGGCCATACTT
13._PA_156_[PER]___
________________ACGG____ACTT
14._PA_186_[PER]___
__AATT__________ACGG______TT
15._EET_400_[ECU]___
__AATT__________ACGG______TT
16._CRUZ_7_/14___
________________ACCG____AATT
17._PA_71_[PER]___
________________ACCG____AATT
 85 86 87 88 89 90 91 92 93 94     
_Input profile
CCCCCTAACTCCTTTTAAGGX_XX_XX_XX_X
1._PA_156_[PER]___
CCCC__AA__CCTTTT____X_XX_XX_XX_X
2._PA_156_[PER]___
CCCC__AA__CCTTTT____X_XX_XX_XX_X
3._PA_156_[PER]___
CCCC__AA__CCTTTT____X_XX_XX_XX_X
4._PA_156_[PER]___
CCCC__AA__CCTTTT____X_XX_XX_XX_X
5._PA_156_[PER]___
CCCC__AA__CCTTTT____X_XX_XX_XX_X
6._PA_156_[PER]___
CCCC__AA__CCTTTT____X_XX_XX_XX_X
7._PA_156_[PER]___
CCCC__AA__CCTTTT____X_XX_XX_XX_X
8._PA_156_[PER]___
CC____AA__CCTTTT____X_XX_XX_XX_X
9._PA_156_[PER]___
CCCCCTAACTCCTTTTAAGGX_XX_XX_XX_X
10._PA_156_[PER]___
CCCCCTAACTCCTTTTAAGGX_XX_XX_XX_X
11._PA_156_[PER]___
CCCCCTAACTCCTTTTAAGGX_XX_XX_XX_X
12._PA_156_[PER]___
CCCCCTAACTCCTTTTAAGGX_XX_XX_XX_X
13._PA_156_[PER]___
______AA__CCTT______X_XX_XX_XX_X
14._PA_186_[PER]___
CCCC__AA__CCTTTT____X_XX_XX_XX_X
15._EET_400_[ECU]___
CTCC__AA__CCTTTT____X_XX_XX_XX_X
16._CRUZ_7_/14___
______AACCCCTT______X_XX_XX_XX_X
17._PA_71_[PER]___
______AACCCCTT______X_XX_XX_XX_X

Input profile: PA_156_[PER] GC-05-137-3-39

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

1._PA_156_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 5 > FP
 Dapeng Zhang, 2016

2._PA_156_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 4 > FP
 Dapeng Zhang, 2016

3._PA_156_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 3 > FP
 Dapeng Zhang, 2016

4._PA_156_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 2
 Dapeng Zhang, 2016

5._PA_156_[PER] RUQ_1531

identical
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

6._PA_156_[PER]

identical
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row1 C0184 28
 Dapeng Zhang, 2016

7._PA_156_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 1
 Dapeng Zhang, 2016

8._PA_156_[PER]

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D295 T1
 Dapeng Zhang, 2016

9._PA_156_[PER] GC-05-137-3-39

99.5 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._PA_156_[PER] GC-05-137-3-39

99.5 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

11._PA_156_[PER] GC-05-137-3-39

99.5 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

12._PA_156_[PER] GC-05-137-3-39

99.5 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

13._PA_156_[PER] RUQ_1531

98.8 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

14._PA_186_[PER]

97.6 %
41 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 446
 Dapeng Zhang, 2014

15._EET_400_[ECU]

93.8 %
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot85/Trial II 2B
 Dapeng Zhang, 2016

16._CRUZ_7_/14 RUQ_1569

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._PA_71_[PER] RUQ_1564

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240