SNP Profiles matching B-12.1

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 Key

 1234567891011121314
_Input profile
TTCTCCAAAATTTTCCTTAGTTTTTTTT
1._GC-05-093-2-44
TTCTCCAAAATTTTCCTTAGTTTTTTTT
2._GC-05-011-1-11
TTCTCCAAAATTTTCCTTAGTTTTTTTT
3._GC-05-093-2-44
TTCTCCAAAATTTTCCTTAGTTTTTTTT
4._GC-05-093-2-44
TTCTCCAAAATTTTCCTTAGTTTTTTTT
5._GC-05-093-2-44
TTCTCCAAAATTTTCCTTAGTTTTTTTT
6._B_12_/1_[POU]
TTCTCC________CCTTAG__TT____
7._B_12_/1_[POU]
TTCTCC________CCTTAG__TT____
8._B_12_/1_[POU]
TTCTCC________CCTTAG__TT____
9._B_12_/1_[POU]
TTCTCC________CCTTAG__TT____
10._PA_121_[PER]
TTCTCC________CCTTAG__TT____
11._B_12_/1_[POU]
TTCTCC________CCTTAG__TT____
12._B_12_/1_[POU]
TTCTCC________CCTTAG__TT____
13._RUQ_1541
TTCTCC________CCTTAG__CT____
14._RUQ_1541
__CTCC____TT__CC____TTTT____
 1516171819202122232425262728
_Input profile
AAAAAGCGGGGGCCAACCGGAATTCCGG
1._GC-05-093-2-44
AAAAAGCGGGGGCCAACCGGAATTCCGG
2._GC-05-011-1-11
AAAAAGCGGGGGCCAACCGGAATTCCGG
3._GC-05-093-2-44
AAAAAGCGGGGGCCAACCGGAATTCCGG
4._GC-05-093-2-44
AAAAAGCGGGGGCCAACCGGAATTCCGG
5._GC-05-093-2-44
AAAAAGCGGGGGCCAACCGGAATTCCGG
6._B_12_/1_[POU]
____AG____GG________AATT__GG
7._B_12_/1_[POU]
____AG____GG________AATT__GG
8._B_12_/1_[POU]
____AG____GG________AATT__GG
9._B_12_/1_[POU]
____AG____GG________AATT__GG
10._PA_121_[PER]
____AG____GG________AATT__GG
11._B_12_/1_[POU]
____AG____GG________AATT__GG
12._B_12_/1_[POU]
____AG____GG________AATT__GG
13._RUQ_1541
____AG____GG________AATT__GG
14._RUQ_1541
________GG________GG__TTCCGG
 2930313233343536373839404142
_Input profile
AATTTTAGGGCCAGGTGGTTGGCTGGGG
1._GC-05-093-2-44
AATTTTAGGGCCAGGTGGTTGGCTGGGG
2._GC-05-011-1-11
AATTTTAGGGCCAGGTGGTTGGCTGGGG
3._GC-05-093-2-44
AATTTTAGGGCCAGGTGGTTGGCTGGGG
4._GC-05-093-2-44
AATTTTAGGGCCAGGTGGTTGGCTGGGG
5._GC-05-093-2-44
AATTTTAGGGCCAGGTGGTTGGCTGGGG
6._B_12_/1_[POU]
AA______GG__AGGT____GG______
7._B_12_/1_[POU]
AA______GG__AGGT____GG______
8._B_12_/1_[POU]
AA______GG__AGGT____GG______
9._B_12_/1_[POU]
AA______GG__AGGT____GG______
10._PA_121_[PER]
AA______GG__AGGT____GG______
11._B_12_/1_[POU]
AA______GG__AGGT____GG______
12._B_12_/1_[POU]
AA______GG__AGGT____GG______
13._RUQ_1541
AA______GG__AGGT____GG______
14._RUQ_1541
______AGGGCCAGGT____GGCT____
 4344454647484950515253545556
_Input profile
TTATCCAAGGGGCTACGGAGTTTTCTCC
1._GC-05-093-2-44
TTATCCAAGGGGCTACGGAGTTTTCTCC
2._GC-05-011-1-11
TTATCCAAGGGGCTACGGAGTTTTCTCC
3._GC-05-093-2-44
__ATCCAAGGGGCTACGGAGTTTTCTCC
4._GC-05-093-2-44
TTATCCAAGGGGCTACGGAGTTTT__CC
5._GC-05-093-2-44
TTATCCAAGGGGCTACGGAG__TTCTCC
6._B_12_/1_[POU]
____CC__________________CTCC
7._B_12_/1_[POU]
____CC__________________CTCC
8._B_12_/1_[POU]
____CC__________________CTCC
9._B_12_/1_[POU]
____CC__________________CTCC
10._PA_121_[PER]
____CC__________________CTCC
11._B_12_/1_[POU]
____CC__________________CTCC
12._B_12_/1_[POU]
____CC____________________CC
13._RUQ_1541
____CC__________________CTCC
14._RUQ_1541
TTAT____GG____________CTCT__
 5758596061626364656667686970
_Input profile
TTAGCCTTCTAAGGGGCCAAGTGTAGTT
1._GC-05-093-2-44
TTAGCCTTCTAAGGGGCCAAGTGTAGTT
2._GC-05-011-1-11
TTAGCCTTCTAAGGGGCCAAGTGTAGTT
3._GC-05-093-2-44
TTAGCCTTCTAAGGGGCCAAGTGTAGTT
4._GC-05-093-2-44
TTAGCCTTCTAAGGGGCCAAGTGTAGTT
5._GC-05-093-2-44
TTAGCCTTCTAAGGGGCCAAGTGTAGTT
6._B_12_/1_[POU]
____CC__CTAAGG__CCAAGTGT____
7._B_12_/1_[POU]
____CC__CTAAGG__CCAAGTGT____
8._B_12_/1_[POU]
____CC__CTAAGG__CCAAGTGT____
9._B_12_/1_[POU]
____CC__CTAAGG__CCAAGTGT____
10._PA_121_[PER]
____CC__CTAAGG__CCAAGTGT____
11._B_12_/1_[POU]
____CC__CTAAGG__CCAAGTGT____
12._B_12_/1_[POU]
____CC__CTAAGG__CCAAGTGT____
13._RUQ_1541
____CC__CTAAGG__CCAAGTGT____
14._RUQ_1541
TT__CCTTCTAA__GGCCAAGTGTAG__
 7172737475767778798081828384
_Input profile
CCAACTCCAGCCCCAACCCGCCAACCCC
1._GC-05-093-2-44
CCAACTCCAGCCCCAACCCGCCAACCCC
2._GC-05-011-1-11
CCAACTCCAGCCCCAACCCGCCAACCCC
3._GC-05-093-2-44
CCAACTCCAGCCCCAACCCGCCAACCCC
4._GC-05-093-2-44
CCAACTCCAGCCCCAACCCGCCAACCCC
5._GC-05-093-2-44
CCAACTCCAGCCCCAACCCGCCAACCCC
6._B_12_/1_[POU]
__AACT__________CCCG______CC
7._B_12_/1_[POU]
__AACT__________CCCG______CC
8._B_12_/1_[POU]
__AACT__________CCCG______CC
9._B_12_/1_[POU]
__AACT__________CCCG______CC
10._PA_121_[PER]
__AACT__________CCCG______CC
11._B_12_/1_[POU]
__AACT__________CCCG______CC
12._B_12_/1_[POU]
__AACT__________CCCG______CC
13._RUQ_1541
__AACT__________CCCG______CC
14._RUQ_1541
________________CCCG____CCCC
 85868788899091929394    
_Input profile
CTCCTTAACTCCGTTTATGGX_XX_XX_XX_X
1._GC-05-093-2-44
CTCCTTAACTCCGTTTATGGX_XX_XX_XX_X
2._GC-05-011-1-11
CTCCTTAACTCCGTTTATGGX_XX_XX_XX_X
3._GC-05-093-2-44
CTCCTTAACTCCGTTTATGGX_XX_XX_XX_X
4._GC-05-093-2-44
CTCCTTAACTCCGTTTATGGX_XX_XX_XX_X
5._GC-05-093-2-44
CTCCTTAACTCCGTTTATGGX_XX_XX_XX_X
6._B_12_/1_[POU]
CTCC__AA__CCGTTT____X_XX_XX_XX_X
7._B_12_/1_[POU]
CTCC__AA__CCGTTT____X_XX_XX_XX_X
8._B_12_/1_[POU]
CTCC__AA__CCGTTT____X_XX_XX_XX_X
9._B_12_/1_[POU]
CTCC__AA__CCGTTT____X_XX_XX_XX_X
10._PA_121_[PER]
CTCC__AA__CCGTTT____X_XX_XX_XX_X
11._B_12_/1_[POU]
CTCC__AA__CCGTTT____X_XX_XX_XX_X
12._B_12_/1_[POU]
CTCC__AA__CCGTTT____X_XX_XX_XX_X
13._RUQ_1541
CTCC__AA__CCGTTT____X_XX_XX_XX_X
14._RUQ_1541
______AACCCCGT______X_XX_XX_XX_X

Input profile: B_12_/1_[POU] GC-05-093-2-44

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

1._B_12_/1_[POU] GC-05-093-2-44

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._PA_121_[PER] GC-05-011-1-11

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

3._B_12_/1_[POU] GC-05-093-2-44

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._B_12_/1_[POU] GC-05-093-2-44

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

5._B_12_/1_[POU] GC-05-093-2-44

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

6._B_12_/1_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 1 > FP
 Dapeng Zhang, 2016

7._B_12_/1_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 5
 Dapeng Zhang, 2016

8._B_12_/1_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 4
 Dapeng Zhang, 2016

9._B_12_/1_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._PA_121_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5111 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

11._B_12_/1_[POU]

identical
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F461 T10
 Dapeng Zhang, 2016

12._B_12_/1_[POU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 3
 Dapeng Zhang, 2016

13._B_12_/1_[POU] RUQ_1541

98.7 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

14._B_12_/1_[POU] RUQ_1541

97.6 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240