SNP Profiles matching B-12.1

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 Key

 1234567891011121314
_Input profile
TTCCCTCCAAAATTTTCCTTAGTTTTTT
1._GC-05-093-2-44
TT__CTCCAAAATTTTCCTTAGTTTTTT
2._GC-05-093-2-44
TT__CTCCAAAATTTTCCTTAGTTTTTT
3._GC-05-011-1-11
TT__CTCCAAAATTTTCCTTAGTTTTTT
4._GC-05-093-2-44
TT__CTCCAAAATTTTCCTTAGTTTTTT
5._GC-05-093-2-44
TT__CTCCAAAATTTTCCTTAGTTTTTT
6._B_12_/1_[POU]
TTCCCTCC________CCTTAG__TT__
7._B_12_/1_[POU]
TTCCCTCC________CCTTAG__TT__
8._B_12_/1_[POU]
TT__CTCC________CCTTAG__TT__
9._B_12_/1_[POU]
TT__CTCC________CCTTAG__TT__
10._B_12_/1_[POU]
TT__CTCC________CCTTAG__TT__
11._PA_121_[PER]
TT__CTCC________CCTTAG__TT__
12._B_12_/1_[POU]
TT__CTCC________CCTTAG__TT__
13._RUQ_1541
TTCCCTCC________CCTTAG__CT__
14._RUQ_1541
____CTCC____TT__CC____TTTT__
 1516171819202122232425262728
_Input profile
TTAAAAAGCGGGGGCCAACCGGAATTCC
1._GC-05-093-2-44
TTAAAAAGCGGGGGCCAACCGGAATTCC
2._GC-05-093-2-44
TTAAAAAGCGGGGGCCAACCGGAATTCC
3._GC-05-011-1-11
TTAAAAAGCGGGGGCCAACCGGAATTCC
4._GC-05-093-2-44
TTAAAAAGCGGGGGCCAACCGGAATTCC
5._GC-05-093-2-44
TTAAAAAGCGGGGGCCAACCGGAATTCC
6._B_12_/1_[POU]
______AG____GG________AATT__
7._B_12_/1_[POU]
______AG____GG________AATT__
8._B_12_/1_[POU]
______AG____GG________AATT__
9._B_12_/1_[POU]
______AG____GG________AATT__
10._B_12_/1_[POU]
______AG____GG________AATT__
11._PA_121_[PER]
______AG____GG________AATT__
12._B_12_/1_[POU]
______AG____GG________AATT__
13._RUQ_1541
______AG____GG________AATT__
14._RUQ_1541
__________GG________GG__TTCC
 2930313233343536373839404142
_Input profile
GGAATTTTAGGGCCAGGTGGTTGGCTGG
1._GC-05-093-2-44
GGAATTTTAGGGCCAGGTGGTTGGCTGG
2._GC-05-093-2-44
GGAATTTTAGGGCCAGGTGGTTGGCTGG
3._GC-05-011-1-11
GGAATTTTAGGGCCAGGTGGTTGGCTGG
4._GC-05-093-2-44
GGAATTTTAGGGCCAGGTGGTTGGCTGG
5._GC-05-093-2-44
GGAATTTTAGGGCCAGGTGGTTGGCTGG
6._B_12_/1_[POU]
GGAA______GG__AGGT____GG____
7._B_12_/1_[POU]
GGAA______GG__AGGT____GG____
8._B_12_/1_[POU]
GGAA______GG__AGGT____GG____
9._B_12_/1_[POU]
GGAA______GG__AGGT____GG____
10._B_12_/1_[POU]
GGAA______GG__AGGT____GG____
11._PA_121_[PER]
GGAA______GG__AGGT____GG____
12._B_12_/1_[POU]
GGAA______GG__AGGT____GG____
13._RUQ_1541
GGAA______GG__AGGT____GG____
14._RUQ_1541
GG______AGGGCCAGGT____GGCT__
 4344454647484950515253545556
_Input profile
GGATCCAAGGGGCTACGGAGTTTTCTCC
1._GC-05-093-2-44
GGATCCAAGGGGCTACGGAGTTTTCTCC
2._GC-05-093-2-44
GGATCCAAGGGGCTACGGAGTTTTCTCC
3._GC-05-011-1-11
GGATCCAAGGGGCTACGGAGTTTTCTCC
4._GC-05-093-2-44
GGATCCAAGGGGCTACGGAGTTTT__CC
5._GC-05-093-2-44
GGATCCAAGGGGCTACGGAG__TTCTCC
6._B_12_/1_[POU]
____CC__________________CTCC
7._B_12_/1_[POU]
____CC__________________CTCC
8._B_12_/1_[POU]
____CC__________________CTCC
9._B_12_/1_[POU]
____CC__________________CTCC
10._B_12_/1_[POU]
____CC__________________CTCC
11._PA_121_[PER]
____CC__________________CTCC
12._B_12_/1_[POU]
____CC____________________CC
13._RUQ_1541
____CC__________________CTCC
14._RUQ_1541
__AT____GG____________CTCT__
 5758596061626364656667686970
_Input profile
TTAGCCTTCTAAGGGGCCAAGTGTAGTT
1._GC-05-093-2-44
TTAGCCTTCTAAGGGGCCAAGTGTAGTT
2._GC-05-093-2-44
TTAGCCTTCTAAGGGGCCAAGTGTAGTT
3._GC-05-011-1-11
TTAGCCTTCTAAGGGGCCAAGTGTAGTT
4._GC-05-093-2-44
TTAGCCTTCTAAGGGGCCAAGTGTAGTT
5._GC-05-093-2-44
TTAGCCTTCTAAGGGGCCAAGTGTAGTT
6._B_12_/1_[POU]
____CC__CTAAGG__CCAAGTGT____
7._B_12_/1_[POU]
____CC__CTAAGG__CCAAGTGT____
8._B_12_/1_[POU]
____CC__CTAAGG__CCAAGTGT____
9._B_12_/1_[POU]
____CC__CTAAGG__CCAAGTGT____
10._B_12_/1_[POU]
____CC__CTAAGG__CCAAGTGT____
11._PA_121_[PER]
____CC__CTAAGG__CCAAGTGT____
12._B_12_/1_[POU]
____CC__CTAAGG__CCAAGTGT____
13._RUQ_1541
____CC__CTAAGG__CCAAGTGT____
14._RUQ_1541
TT__CCTTCTAA__GGCCAAGTGTAG__
 7172737475767778798081828384
_Input profile
CCAACTCCAGCCCCAACCCGCCAACCCC
1._GC-05-093-2-44
CCAACTCCAGCCCCAACCCGCCAACCCC
2._GC-05-093-2-44
CCAACTCCAGCCCCAACCCGCCAACCCC
3._GC-05-011-1-11
CCAACTCCAGCCCCAACCCGCCAACCCC
4._GC-05-093-2-44
CCAACTCCAGCCCCAACCCGCCAACCCC
5._GC-05-093-2-44
CCAACTCCAGCCCCAACCCGCCAACCCC
6._B_12_/1_[POU]
__AACT__________CCCG______CC
7._B_12_/1_[POU]
__AACT__________CCCG______CC
8._B_12_/1_[POU]
__AACT__________CCCG______CC
9._B_12_/1_[POU]
__AACT__________CCCG______CC
10._B_12_/1_[POU]
__AACT__________CCCG______CC
11._PA_121_[PER]
__AACT__________CCCG______CC
12._B_12_/1_[POU]
__AACT__________CCCG______CC
13._RUQ_1541
__AACT__________CCCG______CC
14._RUQ_1541
________________CCCG____CCCC
 85868788899091929394    
_Input profile
CTCCTTAACTCCGTTTATGGX_XX_XX_XX_X
1._GC-05-093-2-44
CTCCTTAACTCCGTTTATGGX_XX_XX_XX_X
2._GC-05-093-2-44
CTCCTTAACTCCGTTTATGGX_XX_XX_XX_X
3._GC-05-011-1-11
CTCCTTAACTCCGTTTATGGX_XX_XX_XX_X
4._GC-05-093-2-44
CTCCTTAACTCCGTTTATGGX_XX_XX_XX_X
5._GC-05-093-2-44
CTCCTTAACTCCGTTTATGGX_XX_XX_XX_X
6._B_12_/1_[POU]
CTCC__AA__CCGTTT____X_XX_XX_XX_X
7._B_12_/1_[POU]
CTCC__AA__CCGTTT____X_XX_XX_XX_X
8._B_12_/1_[POU]
CTCC__AA__CCGTTT____X_XX_XX_XX_X
9._B_12_/1_[POU]
CTCC__AA__CCGTTT____X_XX_XX_XX_X
10._B_12_/1_[POU]
CTCC__AA__CCGTTT____X_XX_XX_XX_X
11._PA_121_[PER]
CTCC__AA__CCGTTT____X_XX_XX_XX_X
12._B_12_/1_[POU]
CTCC__AA__CCGTTT____X_XX_XX_XX_X
13._RUQ_1541
CTCC__AA__CCGTTT____X_XX_XX_XX_X
14._RUQ_1541
______AACCCCGT______X_XX_XX_XX_X

Input profile: B_12_/1_[POU] GC-05-093-2-44

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

1._B_12_/1_[POU] GC-05-093-2-44

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._B_12_/1_[POU] GC-05-093-2-44

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

3._PA_121_[PER] GC-05-011-1-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

4._B_12_/1_[POU] GC-05-093-2-44

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

5._B_12_/1_[POU] GC-05-093-2-44

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

6._B_12_/1_[POU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

7._B_12_/1_[POU]

identical
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F461 T10
 Dapeng Zhang, 2016

8._B_12_/1_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 1 > FP
 Dapeng Zhang, 2016

9._B_12_/1_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 5
 Dapeng Zhang, 2016

10._B_12_/1_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 4
 Dapeng Zhang, 2016

11._PA_121_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5111 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

12._B_12_/1_[POU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 3
 Dapeng Zhang, 2016

13._B_12_/1_[POU] RUQ_1541

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

14._B_12_/1_[POU] RUQ_1541

97.6 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240