SNP Profiles matching OC 61 [VEN]

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 Key

 1234567891011121314
_Input profile
AAAATTCCGGAGTTCCTTCTGGTTCCCC
1._GC-05-039-1-39
AAAATTCCGGAGTTCCTTCTGGTTCCCC
2._GC-05-039-1-39
AAAATTCCGGAGTTCCTTCTGGTTCCCC
3._GC-05-039-1-39
AAAATTCCGGAGTTCCTTCTGGTTCCCC
4._GC-05-040-1-40
AAAATTCCGGAGTTCCTTCTGGTTCCCC
5._GC-05-040-1-40
AAAATTCCGGAGTTCCTTCTGGTTCCCC
6._GC-05-040-1-40
AAAATTCCGGAGTTCCTTCTGGTTCCCC
7._OC_61_[VEN]
AAAATTCC________TTCTGG__CC__
8._OC_61_[VEN]
AAAATTCC________TTCTGG__CC__
9._OC_61_[VEN]
AAAATTCC________TTCTGG__CC__
10._OC_61_[VEN]
AAAATTCC________TTCTGG__CC__
11._OC_61_[VEN]
AAAATTCC________TTCTGG__CC__
12._OC_61_[VEN]
AAAATTCC________TTCTGG__CC__
13._OC_61_[VEN]
AAAATTCC________TTCTGG__CC__
14._GC-05-039-1-39
AAAATTCCGGAGTTCCTTCTGGTTCCCC
15._GC-05-039-1-39
AAAATTCCGGAGTTCCTTCTGGTTCCCC
16._OC_61_[VEN]
AAAATTCC________TTCTGG__CC__
17._OC_61_[VEN]
AAAATTCC________TTCTGG__CC__
 1516171819202122232425262728
_Input profile
ATCCAAAAGGCCGGTTAGTTAGTTAACC
1._GC-05-039-1-39
ATCCAAAAGGCCGGTTAGTTAGTTAACC
2._GC-05-039-1-39
ATCCAAAAGGCCGGTTAGTTAGTTAACC
3._GC-05-039-1-39
ATCCAAAAGGCCGGTTAGTTAGTTAACC
4._GC-05-040-1-40
ATCCAAAAGGCCGGTTAGTTAGTTAACC
5._GC-05-040-1-40
ATCCAAAAGGCCGGTTAGTTAGTTAACC
6._GC-05-040-1-40
ATCCAAAAGGCCGGTTAGTTAGTTAACC
7._OC_61_[VEN]
______AA____GG________TTAA__
8._OC_61_[VEN]
______AA____GG________TTAA__
9._OC_61_[VEN]
______AA____GG________TTAA__
10._OC_61_[VEN]
______AA____GG________TTAA__
11._OC_61_[VEN]
______AA____GG________TTAA__
12._OC_61_[VEN]
______AA____GG________TTAA__
13._OC_61_[VEN]
______AA____GG________TTAA__
14._GC-05-039-1-39
ATCCAAAAGGCCGGTTAGTTAGTTAACC
15._GC-05-039-1-39
ATCCAAAAGGCCGGTTAGTTAGTTAACC
16._OC_61_[VEN]
______AA____GG________TTAA__
17._OC_61_[VEN]
______AA____GG________TTAA__
 2930313233343536373839404142
_Input profile
CGAATTAACCCCAGTTGGTTAACTAACC
1._GC-05-039-1-39
CGAATTAACCCCAGTTGGTTAACTAACC
2._GC-05-039-1-39
CGAATTAACCCCAGTTGGTTAACTAACC
3._GC-05-039-1-39
CGAATTAACCCCAGTTGGTTAACTAACC
4._GC-05-040-1-40
CGAATTAACCCCAGTTGGTTAACTAACC
5._GC-05-040-1-40
CGAATTAACCCCAGTTGGTTAACTAACC
6._GC-05-040-1-40
CGAATTAACCCCAGTTGGTTAACTAACC
7._OC_61_[VEN]
CGAA____CC__AGTT____AA______
8._OC_61_[VEN]
CGAA____CC__AGTT____AA______
9._OC_61_[VEN]
CGAA____CC__AGTT____AA______
10._OC_61_[VEN]
CGAA____CC__AGTT____AA______
11._OC_61_[VEN]
CGAA____CC__AGTT____AA______
12._OC_61_[VEN]
CGAA____CC__AGTT____AA______
13._OC_61_[VEN]
CGAA____CC__AGTT____AA______
14._GC-05-039-1-39
CGAATTAACCCCAGTTGGTTAACTAACC
15._GC-05-039-1-39
CGAATTAACCCCAGTTGGTTAACTAACC
16._OC_61_[VEN]
CGAA____CC__AGTT____AA______
17._OC_61_[VEN]
CGAA____CC__AGTT____AA______
 4344454647484950515253545556
_Input profile
GGTTCCAGAGAACTCCGGGGGGTTCCTT
1._GC-05-039-1-39
GGTTCCAGAGAACTCCGGGGGGTTCCTT
2._GC-05-039-1-39
GGTTCCAGAGAACTCCGGGGGGTTCCTT
3._GC-05-039-1-39
GGTTCCAGAGAACTCCGGGGGGTTCCTT
4._GC-05-040-1-40
GGTTCCAGAGAACTCCGGGGGGTTCCTT
5._GC-05-040-1-40
GGTTCCAGAGAACTCCGGGGGGTTCCTT
6._GC-05-040-1-40
GGTTCCAGAGAACTCCGGGGGGTTCCTT
7._OC_61_[VEN]
____CC__________________CCTT
8._OC_61_[VEN]
____CC__________________CCTT
9._OC_61_[VEN]
____CC__________________CCTT
10._OC_61_[VEN]
____CC__________________CCTT
11._OC_61_[VEN]
____CC__________________CCTT
12._OC_61_[VEN]
____CC__________________CCTT
13._OC_61_[VEN]
____CC__________________CCTT
14._GC-05-039-1-39
GGTTCCAGAGAACTCCGGGGGGTTCCTT
15._GC-05-039-1-39
GGTTCCAGAGAACTCCGGGGGGTTCCTT
16._OC_61_[VEN]
____CC__________________CCTT
17._OC_61_[VEN]
____CC__________________CCTT
 5758596061626364656667686970
_Input profile
TTGGCGTTCTAAGGGGCCAGTTGGGGCT
1._GC-05-039-1-39
TTGGCGTTCTAAGGGGCCAGTTGGGGCT
2._GC-05-039-1-39
TTGGCGTTCTAAGGGGCCAGTTGGGGCT
3._GC-05-039-1-39
TTGGCGTTCTAAGGGGCCAGTTGGGGCT
4._GC-05-040-1-40
TTGGCGTTCTAAGGGGCCAGTTGGGGCT
5._GC-05-040-1-40
TTGGCGTTCTAAGGGGCCAGTTGGGGCT
6._GC-05-040-1-40
TTGGCGTTCTAAGGGGCCAGTTGGGGCT
7._OC_61_[VEN]
____CG__CTAAGG__CCAGTTGG____
8._OC_61_[VEN]
____CG__CTAAGG__CCAGTTGG____
9._OC_61_[VEN]
____CG__CTAAGG__CCAGTTGG____
10._OC_61_[VEN]
____CG__CTAAGG__CCAGTTGG____
11._OC_61_[VEN]
____CG__CTAAGG__CCAGTTGG____
12._OC_61_[VEN]
____CG__CTAAGG__CCAGTTGG____
13._OC_61_[VEN]
____CG__CTAAGG__CCAGTTGG____
14._GC-05-039-1-39
TTGGCGTTCTAAGGGGACAGTTGGGGCT
15._GC-05-039-1-39
TTGGCGTTCTAAGGGGACAGTTGGGGCT
16._OC_61_[VEN]
____CG__CTAAGG__ACAGTTGG____
17._OC_61_[VEN]
____CG__CTAAGG__ACAGTTGG____
 7172737475767778798081828384
_Input profile
CCGGTTACAGCCAAGGCCGGCTAACCTT
1._GC-05-039-1-39
CCGGTTACAGCCAAGGCCGGCTAACCTT
2._GC-05-039-1-39
CCGGTTACAGCCAAGGCCGGCTAACCTT
3._GC-05-039-1-39
CCGGTTACAGCCAAGGCCGGCTAACCTT
4._GC-05-040-1-40
CCGGTTACAGCCAAGGCCGGCTAACCTT
5._GC-05-040-1-40
CCGGTTACAGCCAAGGCCGGCTAACCTT
6._GC-05-040-1-40
CCGGTTACAGCCAAGGCCGGCTAACCTT
7._OC_61_[VEN]
__GGTT__________CCGG______TT
8._OC_61_[VEN]
__GGTT__________CCGG______TT
9._OC_61_[VEN]
__GGTT__________CCGG______TT
10._OC_61_[VEN]
__GGTT__________CCGG______TT
11._OC_61_[VEN]
__GGTT__________CCGG______TT
12._OC_61_[VEN]
__GGTT__________CCGG______TT
13._OC_61_[VEN]
__GGTT__________CCGG______TT
14._GC-05-039-1-39
CCGGTTACAGCCAAGGCCGGCTAACCTT
15._GC-05-039-1-39
CCGGTTACAGCCAAGGCCGGCTAACCTT
16._OC_61_[VEN]
__GGTT__________CCGG______TT
17._OC_61_[VEN]
__GGTT__________CCGG______TT
 85868788899091929394    
_Input profile
TTTTTTAACCCCTTTTAAGGX_XX_XX_XX_X
1._GC-05-039-1-39
TTTTTTAACCCCTTTTAAGGX_XX_XX_XX_X
2._GC-05-039-1-39
TTTTTTAACCCCTTTTAAGGX_XX_XX_XX_X
3._GC-05-039-1-39
TTTTTTAACCCCTTTTAAGGX_XX_XX_XX_X
4._GC-05-040-1-40
TTTTTTAACCCCTTTTAAGGX_XX_XX_XX_X
5._GC-05-040-1-40
TTTTTTAACCCCTTTTAAGGX_XX_XX_XX_X
6._GC-05-040-1-40
TTTTTTAACCCCTTTTAAGGX_XX_XX_XX_X
7._OC_61_[VEN]
TTTT__AA__CCTTTT____X_XX_XX_XX_X
8._OC_61_[VEN]
TTTT__AA__CCTTTT____X_XX_XX_XX_X
9._OC_61_[VEN]
TTTT__AA__CCTTTT____X_XX_XX_XX_X
10._OC_61_[VEN]
TTTT__AA__CCTTTT____X_XX_XX_XX_X
11._OC_61_[VEN]
TTTT__AA__CCTTTT____X_XX_XX_XX_X
12._OC_61_[VEN]
TTTT__AA__CCTTTT____X_XX_XX_XX_X
13._OC_61_[VEN]
TTTT__AA__CCTTTT____X_XX_XX_XX_X
14._GC-05-039-1-39
TTTTTTAACCCCTTTTAAGGX_XX_XX_XX_X
15._GC-05-039-1-39
TTTTTTAACCCCTTTTAAGGX_XX_XX_XX_X
16._OC_61_[VEN]
TTTT__AA__CCTTTT____X_XX_XX_XX_X
17._OC_61_[VEN]
TTTT__AA__CCTTTT____X_XX_XX_XX_X

Input profile: OC_61_[VEN] GC-05-040-1-40

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

1._OC_61_[VEN] GC-05-039-1-39

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

2._OC_61_[VEN] GC-05-039-1-39

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

3._OC_61_[VEN] GC-05-039-1-39

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

4._OC_61_[VEN] GC-05-040-1-40

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

5._OC_61_[VEN] GC-05-040-1-40

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

6._OC_61_[VEN] GC-05-040-1-40

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

7._OC_61_[VEN]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5139 5 > FP
 Dapeng Zhang, 2016

8._OC_61_[VEN]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5139 4 > FP
 Dapeng Zhang, 2016

9._OC_61_[VEN]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5139 3 > FP
 Dapeng Zhang, 2016

10._OC_61_[VEN]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5140 5 > FP
 Dapeng Zhang, 2016

11._OC_61_[VEN]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5140 4 > FP
 Dapeng Zhang, 2016

12._OC_61_[VEN]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5140 3 > FP
 Dapeng Zhang, 2016

13._OC_61_[VEN]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5140 1 > FP
 Dapeng Zhang, 2016

14._OC_61_[VEN] GC-05-039-1-39

99.5 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

15._OC_61_[VEN] GC-05-039-1-39

99.5 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

16._OC_61_[VEN]

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5139 1 > FP
 Dapeng Zhang, 2016

17._OC_61_[VEN]

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5139 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240