SNP Profiles matching OC 61 [VEN]

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 Key

 1234567891011121314
_Input profile
AAAATTCCGGAGTTCCTTCTGGTTCCCC
1._GC-05-039-1-39
AAAATTCCGGAGTTCCTTCTGGTTCCCC
2._GC-05-039-1-39
AAAATTCCGGAGTTCCTTCTGGTTCCCC
3._GC-05-039-1-39
AAAATTCCGGAGTTCCTTCTGGTTCCCC
4._GC-05-040-1-40
AAAATTCCGGAGTTCCTTCTGGTTCCCC
5._GC-05-040-1-40
AAAATTCCGGAGTTCCTTCTGGTTCCCC
6._GC-05-040-1-40
AAAATTCCGGAGTTCCTTCTGGTTCCCC
7._OC_61_[VEN]
AAAATTCC____TTCTGG_CC_
8._OC_61_[VEN]
AAAATTCC____TTCTGG_CC_
9._OC_61_[VEN]
AAAATTCC____TTCTGG_CC_
10._OC_61_[VEN]
AAAATTCC____TTCTGG_CC_
11._OC_61_[VEN]
AAAATTCC____TTCTGG_CC_
12._OC_61_[VEN]
AAAATTCC____TTCTGG_CC_
13._OC_61_[VEN]
AAAATTCC____TTCTGG_CC_
14._GC-05-039-1-39
AAAATTCCGGAGTTCCTTCTGGTTCCCC
15._GC-05-039-1-39
AAAATTCCGGAGTTCCTTCTGGTTCCCC
16._OC_61_[VEN]
AAAATTCC____TTCTGG_CC_
17._OC_61_[VEN]
AAAATTCC____TTCTGG_CC_
 1516171819202122232425262728
_Input profile
ATCCAAAAGGCCGGTTAGTTAGTTAACC
1._GC-05-039-1-39
ATCCAAAAGGCCGGTTAGTTAGTTAACC
2._GC-05-039-1-39
ATCCAAAAGGCCGGTTAGTTAGTTAACC
3._GC-05-039-1-39
ATCCAAAAGGCCGGTTAGTTAGTTAACC
4._GC-05-040-1-40
ATCCAAAAGGCCGGTTAGTTAGTTAACC
5._GC-05-040-1-40
ATCCAAAAGGCCGGTTAGTTAGTTAACC
6._GC-05-040-1-40
ATCCAAAAGGCCGGTTAGTTAGTTAACC
7._OC_61_[VEN]
___AA__GG____TTAA_
8._OC_61_[VEN]
___AA__GG____TTAA_
9._OC_61_[VEN]
___AA__GG____TTAA_
10._OC_61_[VEN]
___AA__GG____TTAA_
11._OC_61_[VEN]
___AA__GG____TTAA_
12._OC_61_[VEN]
___AA__GG____TTAA_
13._OC_61_[VEN]
___AA__GG____TTAA_
14._GC-05-039-1-39
ATCCAAAAGGCCGGTTAGTTAGTTAACC
15._GC-05-039-1-39
ATCCAAAAGGCCGGTTAGTTAGTTAACC
16._OC_61_[VEN]
___AA__GG____TTAA_
17._OC_61_[VEN]
___AA__GG____TTAA_
 2930313233343536373839404142
_Input profile
CGAATTGGAACCCCAGTTGGTTAACTAA
1._GC-05-039-1-39
CGAATTGGAACCCCAGTTGGTTAACTAA
2._GC-05-039-1-39
CGAATTGGAACCCCAGTTGGTTAACTAA
3._GC-05-039-1-39
CGAATTGGAACCCCAGTTGGTTAACTAA
4._GC-05-040-1-40
CGAATTGGAACCCCAGTTGGTTAACTAA
5._GC-05-040-1-40
CGAATTGGAACCCCAGTTGGTTAACTAA
6._GC-05-040-1-40
CGAATT_AACCCCAGTTGGTTAACTAA
7._OC_61_[VEN]
CGAA___CC_AGTT__AA__
8._OC_61_[VEN]
CGAA___CC_AGTT__AA__
9._OC_61_[VEN]
CGAA___CC_AGTT__AA__
10._OC_61_[VEN]
CGAA___CC_AGTT__AA__
11._OC_61_[VEN]
CGAA___CC_AGTT__AA__
12._OC_61_[VEN]
CGAA___CC_AGTT__AA__
13._OC_61_[VEN]
CGAA___CC_AGTT__AA__
14._GC-05-039-1-39
CGAATTGGAACCCCAGTTGGTTAACTAA
15._GC-05-039-1-39
CGAATTGGAACCCCAGTTGGTTAACTAA
16._OC_61_[VEN]
CGAA___CC_AGTT__AA__
17._OC_61_[VEN]
CGAA___CC_AGTT__AA__
 4344454647484950515253545556
_Input profile
CCGGTTCCAGAGAACTCCGGGGGGTTCC
1._GC-05-039-1-39
CCGGTTCCAGAGAACTCCGGGGGGTTCC
2._GC-05-039-1-39
CCGGTTCCAGAGAACTCCGGGGGGTTCC
3._GC-05-039-1-39
CCGGTTCCAGAGAACTCCGGGGGGTTCC
4._GC-05-040-1-40
CCGGTTCCAGAGAACTCCGGGGGGTTCC
5._GC-05-040-1-40
CCGGTTCCAGAGAACTCCGGGGGGTTCC
6._GC-05-040-1-40
CCGGTTCCAGAGAACTCCGGGGGGTTCC
7._OC_61_[VEN]
___CC_________CC
8._OC_61_[VEN]
___CC_________CC
9._OC_61_[VEN]
___CC_________CC
10._OC_61_[VEN]
___CC_________CC
11._OC_61_[VEN]
___CC_________CC
12._OC_61_[VEN]
___CC_________CC
13._OC_61_[VEN]
___CC_________CC
14._GC-05-039-1-39
CCGGTTCCAGAGAACTCCGGGGGGTTCC
15._GC-05-039-1-39
CCGGTTCCAGAGAACTCCGGGGGGTTCC
16._OC_61_[VEN]
___CC_________CC
17._OC_61_[VEN]
___CC_________CC
 5758596061626364656667686970
_Input profile
TTTTGGCGTTCTAAGGGGCCAGTTGGGG
1._GC-05-039-1-39
TTTTGGCGTTCTAAGGGGCCAGTTGGGG
2._GC-05-039-1-39
TTTTGGCGTTCTAAGGGGCCAGTTGGGG
3._GC-05-039-1-39
TTTTGGCGTTCTAAGGGGCCAGTTGGGG
4._GC-05-040-1-40
TTTTGGCGTTCTAAGGGGCCAGTTGGGG
5._GC-05-040-1-40
TTTTGGCGTTCTAAGGGGCCAGTTGGGG
6._GC-05-040-1-40
TTTTGGCGTTCTAAGGGGCCAGTTGGGG
7._OC_61_[VEN]
TT__CG_CTAAGG_CCAGTTGG_
8._OC_61_[VEN]
TT__CG_CTAAGG_CCAGTTGG_
9._OC_61_[VEN]
TT__CG_CTAAGG_CCAGTTGG_
10._OC_61_[VEN]
TT__CG_CTAAGG_CCAGTTGG_
11._OC_61_[VEN]
TT__CG_CTAAGG_CCAGTTGG_
12._OC_61_[VEN]
TT__CG_CTAAGG_CCAGTTGG_
13._OC_61_[VEN]
TT__CG_CTAAGG_CCAGTTGG_
14._GC-05-039-1-39
TTTTGGCGTTCTAAGGGGACAGTTGGGG
15._GC-05-039-1-39
TTTTGGCGTTCTAAGGGGACAGTTGGGG
16._OC_61_[VEN]
TT__CG_CTAAGG_ACAGTTGG_
17._OC_61_[VEN]
TT__CG_CTAAGG_ACAGTTGG_
 7172737475767778798081828384
_Input profile
CTCCGGTTACAGCCAAGGCCGGCTAACC
1._GC-05-039-1-39
CTCCGGTTACAGCCAAGGCCGGCTAACC
2._GC-05-039-1-39
CTCCGGTTACAGCCAAGGCCGGCTAACC
3._GC-05-039-1-39
CTCCGGTTACAGCCAAGGCCGGCTAACC
4._GC-05-040-1-40
CTCCGGTTACAGCCAAGGCCGGCTAACC
5._GC-05-040-1-40
CTCCGGTTACAGCCAAGGCCGGCTAACC
6._GC-05-040-1-40
CTCCGGTTACAGCCAAGGCCGGCTAACC
7._OC_61_[VEN]
__GGTT_____CCGG___
8._OC_61_[VEN]
__GGTT_____CCGG___
9._OC_61_[VEN]
__GGTT_____CCGG___
10._OC_61_[VEN]
__GGTT_____CCGG___
11._OC_61_[VEN]
__GGTT_____CCGG___
12._OC_61_[VEN]
__GGTT_____CCGG___
13._OC_61_[VEN]
__GGTT_____CCGG___
14._GC-05-039-1-39
CTCCGGTTACAGCCAAGGCCGGCTAACC
15._GC-05-039-1-39
CTCCGGTTACAGCCAAGGCCGGCTAACC
16._OC_61_[VEN]
__GGTT_____CCGG___
17._OC_61_[VEN]
__GGTT_____CCGG___
 8586878889909192939495   
_Input profile
TTTTTTTTAACCCCTTTTAAGGX_XX_XX_X
1._GC-05-039-1-39
TTTTTTTTAACCCCTTTTAAGGX_XX_XX_X
2._GC-05-039-1-39
TTTTTTTTAACCCCTTTTAAGGX_XX_XX_X
3._GC-05-039-1-39
TTTTTTTTAACCCCTTTTAAGGX_XX_XX_X
4._GC-05-040-1-40
TTTTTTTTAACCCCTTTTAAGGX_XX_XX_X
5._GC-05-040-1-40
TTTTTTTTAACCCCTTTTAAGGX_XX_XX_X
6._GC-05-040-1-40
TTTTTTTTAACCCCTTTTAAGGX_XX_XX_X
7._OC_61_[VEN]
TTTTTT_AA_CCTTTT__X_XX_XX_X
8._OC_61_[VEN]
TTTTTT_AA_CCTTTT__X_XX_XX_X
9._OC_61_[VEN]
TTTTTT_AA_CCTTTT__X_XX_XX_X
10._OC_61_[VEN]
TTTTTT_AA_CCTTTT__X_XX_XX_X
11._OC_61_[VEN]
TTTTTT_AA_CCTTTT__X_XX_XX_X
12._OC_61_[VEN]
TTTTTT_AA_CCTTTT__X_XX_XX_X
13._OC_61_[VEN]
TTTTTT_AA_CCTTTT__X_XX_XX_X
14._GC-05-039-1-39
TTTTTTTTAACCCCTTTTAAGGX_XX_XX_X
15._GC-05-039-1-39
TTTTTTTTAACCCCTTTTAAGGX_XX_XX_X
16._OC_61_[VEN]
TTTTTT_AA_CCTTTT__X_XX_XX_X
17._OC_61_[VEN]
TTTTTT_AA_CCTTTT__X_XX_XX_X

Input profile: OC_61_[VEN] GC-05-040-1-40

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

1._OC_61_[VEN] GC-05-039-1-39

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

2._OC_61_[VEN] GC-05-039-1-39

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

3._OC_61_[VEN] GC-05-039-1-39

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

4._OC_61_[VEN] GC-05-040-1-40

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

5._OC_61_[VEN] GC-05-040-1-40

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

6._OC_61_[VEN] GC-05-040-1-40

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

7._OC_61_[VEN]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5139 5 > FP
 Dapeng Zhang, 2016

8._OC_61_[VEN]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5139 4 > FP
 Dapeng Zhang, 2016

9._OC_61_[VEN]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5139 3 > FP
 Dapeng Zhang, 2016

10._OC_61_[VEN]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5140 5 > FP
 Dapeng Zhang, 2016

11._OC_61_[VEN]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5140 4 > FP
 Dapeng Zhang, 2016

12._OC_61_[VEN]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5140 3 > FP
 Dapeng Zhang, 2016

13._OC_61_[VEN]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5140 1 > FP
 Dapeng Zhang, 2016

14._OC_61_[VEN] GC-05-039-1-39

99.5 %
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

15._OC_61_[VEN] GC-05-039-1-39

99.5 %
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

16._OC_61_[VEN]

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5139 1 > FP
 Dapeng Zhang, 2016

17._OC_61_[VEN]

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5139 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240