SNP Profiles matching OC 61 [VEN]

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 Key

 1234567891011121314
_Input profile
AAAATTCCGGAGTTCCTTCTGGTTCCCC
1._GC-05-039-1-39
AAAATTCCGGAGTTCCTTCTGGTTCCCC
2._OC_61_[VEN]
AAAATTCC________TTCTGG__CC__
3._OC_61_[VEN]
AAAATTCC________TTCTGG__CC__
4._GC-05-039-1-39
AAAATTCCGGAGTTCCTTCTGGTTCCCC
5._GC-05-039-1-39
AAAATTCCGGAGTTCCTTCTGGTTCCCC
6._GC-05-039-1-39
AAAATTCCGGAGTTCCTTCTGGTTCCCC
7._GC-05-040-1-40
AAAATTCCGGAGTTCCTTCTGGTTCCCC
8._GC-05-040-1-40
AAAATTCCGGAGTTCCTTCTGGTTCCCC
9._GC-05-040-1-40
AAAATTCCGGAGTTCCTTCTGGTTCCCC
10._GC-05-040-1-40
AAAATTCCGGAGTTCCTTCTGGTTCCCC
11._OC_61_[VEN]
AAAATTCC________TTCTGG__CC__
12._OC_61_[VEN]
AAAATTCC________TTCTGG__CC__
13._OC_61_[VEN]
AAAATTCC________TTCTGG__CC__
14._OC_61_[VEN]
AAAATTCC________TTCTGG__CC__
15._OC_61_[VEN]
AAAATTCC________TTCTGG__CC__
16._OC_61_[VEN]
AAAATTCC________TTCTGG__CC__
17._OC_61_[VEN]
AAAATTCC________TTCTGG__CC__
18._ICS_1
AAAATTAC________TTCTGG__CC__
19._ICS_1
AAAATTAC________TTCTGG__CC__
20._ICS_1
AAAATTAC________TTCTGG__CC__
21._ICS_1
AAAATTAC________TTCTGG__CC__
22._ICS_1
AAAATTAC________TTCTGG__CC__
23._ICS_1
AAAATTAC________TTCTGG__CC__
24._PA_70_[PER]
AAAATTAC________TTCTGG__CC__
 1516171819202122232425262728
_Input profile
ATCCAAAAGGCCGGTTAGTTAGTTAACC
1._GC-05-039-1-39
ATCCAAAAGGCCGGTTAGTTAGTTAACC
2._OC_61_[VEN]
______AA____GG________TTAA__
3._OC_61_[VEN]
______AA____GG________TTAA__
4._GC-05-039-1-39
ATCCAAAAGGCCGGTTAGTTAGTTAACC
5._GC-05-039-1-39
ATCCAAAAGGCCGGTTAGTTAGTTAACC
6._GC-05-039-1-39
ATCCAAAAGGCCGGTTAGTTAGTTAACC
7._GC-05-040-1-40
ATCCAAAAGGCCGGTTAGTTAGTTAACC
8._GC-05-040-1-40
ATCCAAAAGGCCGGTTAGTTAGTTAACC
9._GC-05-040-1-40
ATCCAAAAGGCCGGTTAGTTAGTTAACC
10._GC-05-040-1-40
ATCCAAAAGGCCGGTTAGTTAGTTAACC
11._OC_61_[VEN]
______AA____GG________TTAA__
12._OC_61_[VEN]
______AA____GG________TTAA__
13._OC_61_[VEN]
______AA____GG________TTAA__
14._OC_61_[VEN]
______AA____GG________TTAA__
15._OC_61_[VEN]
______AA____GG________TTAA__
16._OC_61_[VEN]
______AA____GG________TTAA__
17._OC_61_[VEN]
______AA____GG________TTAA__
18._ICS_1
______AA____GG________ATAT__
19._ICS_1
______AA____GG________ATAT__
20._ICS_1
______AA____GG________ATAT__
21._ICS_1
______AA____GG________ATAT__
22._ICS_1
______AA____GG________ATAT__
23._ICS_1
______AA____GG________ATAT__
24._PA_70_[PER]
______AA____GG________ATAT__
 2930313233343536373839404142
_Input profile
CGAATTGGAACCCCAGTTGGTTAACTAA
1._GC-05-039-1-39
CGAATTGGAACCCCAGTTGGTTAACTAA
2._OC_61_[VEN]
CGAA______CC__AGTT____AA____
3._OC_61_[VEN]
CGAA______CC__AGTT____AA____
4._GC-05-039-1-39
CGAATTGGAACCCCAGTTGGTTAACTAA
5._GC-05-039-1-39
CGAATTGGAACCCCAGTTGGTTAACTAA
6._GC-05-039-1-39
CGAATTGGAACCCCAGTTGGTTAACTAA
7._GC-05-040-1-40
CGAATTGGAACCCCAGTTGGTTAACTAA
8._GC-05-040-1-40
CGAATTGGAACCCCAGTTGGTTAACTAA
9._GC-05-040-1-40
CGAATTGGAACCCCAGTTGGTTAACTAA
10._GC-05-040-1-40
CGAATT__AACCCCAGTTGGTTAACTAA
11._OC_61_[VEN]
CGAA______CC__AGTT____AA____
12._OC_61_[VEN]
CGAA______CC__AGTT____AA____
13._OC_61_[VEN]
CGAA______CC__AGTT____AA____
14._OC_61_[VEN]
CGAA______CC__AGTT____AA____
15._OC_61_[VEN]
CGAA______CC__AGTT____AA____
16._OC_61_[VEN]
CGAA______CC__AGTT____AA____
17._OC_61_[VEN]
CGAA______CC__AGTT____AA____
18._ICS_1
__AA______CC__AGGT____AA____
19._ICS_1
CGAA______CC__AGGT____AA____
20._ICS_1
CGAA______CC__AGGT____AA____
21._ICS_1
CGAA______CC__AGGT____AA____
22._ICS_1
CGAA______CC__AGGT____AA____
23._ICS_1
CGAA______CC__AGGT____AA____
24._PA_70_[PER]
CGAA______CC__AGGT____AA____
 4344454647484950515253545556
_Input profile
CCGGTTCCAGAGAACTCCGGGGGGTTCC
1._GC-05-039-1-39
CCGGTTCCAGAGAACTCCGGGGGGTTCC
2._OC_61_[VEN]
______CC__________________CC
3._OC_61_[VEN]
______CC__________________CC
4._GC-05-039-1-39
CCGGTTCCAGAGAACTCCGGGGGGTTCC
5._GC-05-039-1-39
CCGGTTCCAGAGAACTCCGGGGGGTTCC
6._GC-05-039-1-39
CCGGTTCCAGAGAACTCCGGGGGGTTCC
7._GC-05-040-1-40
CCGGTTCCAGAGAACTCCGGGGGGTTCC
8._GC-05-040-1-40
CCGGTTCCAGAGAACTCCGGGGGGTTCC
9._GC-05-040-1-40
CCGGTTCCAGAGAACTCCGGGGGGTTCC
10._GC-05-040-1-40
CCGGTTCCAGAGAACTCCGGGGGGTTCC
11._OC_61_[VEN]
______CC__________________CC
12._OC_61_[VEN]
______CC__________________CC
13._OC_61_[VEN]
______CC__________________CC
14._OC_61_[VEN]
______CC__________________CC
15._OC_61_[VEN]
______CC__________________CC
16._OC_61_[VEN]
______CC__________________CC
17._OC_61_[VEN]
______CC__________________CC
18._ICS_1
______CC__________________CC
19._ICS_1
______CC__________________CC
20._ICS_1
______CC__________________CC
21._ICS_1
______CC__________________CC
22._ICS_1
______CC__________________CC
23._ICS_1
______CC__________________CC
24._PA_70_[PER]
______CC__________________CC
 5758596061626364656667686970
_Input profile
TTTTGGCGTTCTAAGGGGACAGTTGGGG
1._GC-05-039-1-39
TTTTGGCGTTCTAAGGGGACAGTTGGGG
2._OC_61_[VEN]
TT____CG__CTAAGG__ACAGTTGG__
3._OC_61_[VEN]
TT____CG__CTAAGG__ACAGTTGG__
4._GC-05-039-1-39
TTTTGGCGTTCTAAGGGGCCAGTTGGGG
5._GC-05-039-1-39
TTTTGGCGTTCTAAGGGGCCAGTTGGGG
6._GC-05-039-1-39
TTTTGGCGTTCTAAGGGGCCAGTTGGGG
7._GC-05-040-1-40
TTTTGGCGTTCTAAGGGGCCAGTTGGGG
8._GC-05-040-1-40
TTTTGGCGTTCTAAGGGGCCAGTTGGGG
9._GC-05-040-1-40
TTTTGGCGTTCTAAGGGGCCAGTTGGGG
10._GC-05-040-1-40
TTTTGGCGTTCTAAGGGGCCAGTTGGGG
11._OC_61_[VEN]
TT____CG__CTAAGG__CCAGTTGG__
12._OC_61_[VEN]
TT____CG__CTAAGG__CCAGTTGG__
13._OC_61_[VEN]
TT____CG__CTAAGG__CCAGTTGG__
14._OC_61_[VEN]
TT____CG__CTAAGG__CCAGTTGG__
15._OC_61_[VEN]
TT____CG__CTAAGG__CCAGTTGG__
16._OC_61_[VEN]
TT____CG__CTAAGG__CCAGTTGG__
17._OC_61_[VEN]
TT____CG__CTAAGG__CCAGTTGG__
18._ICS_1
TT____CG__CTAAGG__AAAGTTGT__
19._ICS_1
TT____CG__CTAAGG__AAAGTTGT__
20._ICS_1
TT____CG__CTAAGG__AAAGTTGT__
21._ICS_1
TT____CG__CTAAGG__AAAGTTGT__
22._ICS_1
TT____CG__CTAAGG__AAAGTTGT__
23._ICS_1
TT____CG__CTAAGG__AAAGTTGT__
24._PA_70_[PER]
TT____CG__CTAAGG__AAAGTTGT__
 7172737475767778798081828384
_Input profile
CTCCGGTTACAGCCAAGGCCGGCTAACC
1._GC-05-039-1-39
CTCCGGTTACAGCCAAGGCCGGCTAACC
2._OC_61_[VEN]
____GGTT__________CCGG______
3._OC_61_[VEN]
____GGTT__________CCGG______
4._GC-05-039-1-39
CTCCGGTTACAGCCAAGGCCGGCTAACC
5._GC-05-039-1-39
CTCCGGTTACAGCCAAGGCCGGCTAACC
6._GC-05-039-1-39
CTCCGGTTACAGCCAAGGCCGGCTAACC
7._GC-05-040-1-40
CTCCGGTTACAGCCAAGGCCGGCTAACC
8._GC-05-040-1-40
CTCCGGTTACAGCCAAGGCCGGCTAACC
9._GC-05-040-1-40
CTCCGGTTACAGCCAAGGCCGGCTAACC
10._GC-05-040-1-40
CTCCGGTTACAGCCAAGGCCGGCTAACC
11._OC_61_[VEN]
____GGTT__________CCGG______
12._OC_61_[VEN]
____GGTT__________CCGG______
13._OC_61_[VEN]
____GGTT__________CCGG______
14._OC_61_[VEN]
____GGTT__________CCGG______
15._OC_61_[VEN]
____GGTT__________CCGG______
16._OC_61_[VEN]
____GGTT__________CCGG______
17._OC_61_[VEN]
____GGTT__________CCGG______
18._ICS_1
____GGTT__________CCGG______
19._ICS_1
____GGTT__________CCGG______
20._ICS_1
____GGTT__________CCGG______
21._ICS_1
____GGTT__________CCGG______
22._ICS_1
____GGTT__________CCGG______
23._ICS_1
____GGTT__________CCGG______
24._PA_70_[PER]
____GGTT__________CCGG______
 8586878889909192939495   
_Input profile
TTTTTTTTAACCCCTTTTAAGGX_XX_XX_X
1._GC-05-039-1-39
TTTTTTTTAACCCCTTTTAAGGX_XX_XX_X
2._OC_61_[VEN]
TTTTTT__AA__CCTTTT____X_XX_XX_X
3._OC_61_[VEN]
TTTTTT__AA__CCTTTT____X_XX_XX_X
4._GC-05-039-1-39
TTTTTTTTAACCCCTTTTAAGGX_XX_XX_X
5._GC-05-039-1-39
TTTTTTTTAACCCCTTTTAAGGX_XX_XX_X
6._GC-05-039-1-39
TTTTTTTTAACCCCTTTTAAGGX_XX_XX_X
7._GC-05-040-1-40
TTTTTTTTAACCCCTTTTAAGGX_XX_XX_X
8._GC-05-040-1-40
TTTTTTTTAACCCCTTTTAAGGX_XX_XX_X
9._GC-05-040-1-40
TTTTTTTTAACCCCTTTTAAGGX_XX_XX_X
10._GC-05-040-1-40
TTTTTTTTAACCCCTTTTAAGGX_XX_XX_X
11._OC_61_[VEN]
TTTTTT__AA__CCTTTT____X_XX_XX_X
12._OC_61_[VEN]
TTTTTT__AA__CCTTTT____X_XX_XX_X
13._OC_61_[VEN]
TTTTTT__AA__CCTTTT____X_XX_XX_X
14._OC_61_[VEN]
TTTTTT__AA__CCTTTT____X_XX_XX_X
15._OC_61_[VEN]
TTTTTT__AA__CCTTTT____X_XX_XX_X
16._OC_61_[VEN]
TTTTTT__AA__CCTTTT____X_XX_XX_X
17._OC_61_[VEN]
TTTTTT__AA__CCTTTT____X_XX_XX_X
18._ICS_1
TTTTTT______CTTTTT____X_XX_XX_X
19._ICS_1
TTTTTT__AG__CTTTTT____X_XX_XX_X
20._ICS_1
TTTTTT__AG__CTTTTT____X_XX_XX_X
21._ICS_1
TTTTTT__AG__CTTTTT____X_XX_XX_X
22._ICS_1
TTTTTT__AG__CTTTTT____X_XX_XX_X
23._ICS_1
TTTTTT__AG__CTTTTT____X_XX_XX_X
24._PA_70_[PER]
TTTTTT__AG__CTTTTT____X_XX_XX_X

Input profile: OC_61_[VEN] GC-05-039-1-39

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

1._OC_61_[VEN] GC-05-039-1-39

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._OC_61_[VEN]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5139 1 > FP
 Dapeng Zhang, 2016

3._OC_61_[VEN]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5139 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

4._OC_61_[VEN] GC-05-039-1-39

99.5 %
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

5._OC_61_[VEN] GC-05-039-1-39

99.5 %
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

6._OC_61_[VEN] GC-05-039-1-39

99.5 %
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

7._OC_61_[VEN] GC-05-040-1-40

99.5 %
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._OC_61_[VEN] GC-05-040-1-40

99.5 %
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

9._OC_61_[VEN] GC-05-040-1-40

99.5 %
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

10._OC_61_[VEN] GC-05-040-1-40

99.5 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

11._OC_61_[VEN]

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5139 5 > FP
 Dapeng Zhang, 2016

12._OC_61_[VEN]

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5139 4 > FP
 Dapeng Zhang, 2016

13._OC_61_[VEN]

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5139 3 > FP
 Dapeng Zhang, 2016

14._OC_61_[VEN]

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5140 5 > FP
 Dapeng Zhang, 2016

15._OC_61_[VEN]

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5140 4 > FP
 Dapeng Zhang, 2016

16._OC_61_[VEN]

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5140 3 > FP
 Dapeng Zhang, 2016

17._OC_61_[VEN]

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5140 1 > FP
 Dapeng Zhang, 2016

18._ICS_1

90.8 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block4
 Dapeng Zhang, 2016

19._ICS_1

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 8
 Dapeng Zhang, 2016

20._ICS_1

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 6
 Dapeng Zhang, 2016

21._ICS_1

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 5
 Dapeng Zhang, 2016

22._ICS_1

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 3
 Dapeng Zhang, 2016

23._ICS_1

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

24._PA_70_[PER]

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4317 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240