SNP Profiles matching PA-121

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 Key

 1234567891011121314
_Input profile
AAACCTCCGGAGCCCCCCCCGGTTCCTT
1._GC-05-011-1-11
AAACCTCCGGAGCCCCCCCCGGTTCCTT
2._GC-05-011-1-11
AAACCTCCGGAGCCCCCCCCGGTTCCTT
3._RUQ_1059
__CTCC__CC_CC__TTCC_
4._PA_121_[PER]
AAACCTCC____CCCCGG_CC_
5._PA_121_[PER]
AAACCTCC____CCCCGG_CC_
6._PA_121_[PER]
AAACCTCC____CCCCGG_CC_
7._ICS_1
AAACCTCC____CCCCGG_CC_
8._RUQ_1059
AAACCTCC____CCCCGG_CC_
9._PA_121_[PER]
AAACCTCC____CCCCGG_CC_
10._PA_121_[PER]
AAACCTCC____CCCCGG_CC_
11._PA_121_[PER]
AAACCTCC____CCCCGG_CC_
12._RUQ_952
__CTCC__CC_CC__TTCC_
13._RUQ_1621
__CTCC__CT_CC__TTCC_
 1516171819202122232425262728
_Input profile
AACCGGCGCCCGCTAATTGGATAACCGG
1._GC-05-011-1-11
AACCGGCGCCCGCTAATTGGATAACCGG
2._GC-05-011-1-11
AACCGGCGCCCGCTAATTGGATAACCGG
3._RUQ_1059
____CC____GG_AACCGG
4._PA_121_[PER]
__GG__CG____ATAA_GG
5._PA_121_[PER]
__GG__CG____ATAA_GG
6._PA_121_[PER]
__GG__CG____ATAA_GG
7._ICS_1
__GG__CG____ATAA_GG
8._RUQ_1059
__GG__CG____ATAA_GG
9._PA_121_[PER]
__GG__CG____ATAA_GG
10._PA_121_[PER]
__GG__CG____ATAA_GG
11._PA_121_[PER]
__GG__CG____ATAA_GG
12._RUQ_952
____CC____GG_AACCGG
13._RUQ_1621
____CC____GG_AACCGG
 2930313233343536373839404142
_Input profile
AATTGTGGCGCCAGGTGGTTGGTTAGCC
1._GC-05-011-1-11
AATTGTGGCGCCAGGTGGTTGGTTAGCC
2._GC-05-011-1-11
AATTGTGGCGCCAGGTGGTTGGTTAGCC
3._RUQ_1059
___GGCGCCAGGT__GGTT__
4._PA_121_[PER]
AA___CG_AGGT__GG___
5._PA_121_[PER]
AA___CG_AGGT__GG___
6._PA_121_[PER]
AA___CG_AGGT__GG___
7._ICS_1
AA___CG_AGGT__GG___
8._RUQ_1059
AA___CG_AGGT__GG___
9._PA_121_[PER]
AA___CG_AGGT__GG___
10._PA_121_[PER]
AA___CG_AGGT__GG___
11._PA_121_[PER]
AA___CG_AGGT__GG___
12._RUQ_952
___GGCGCCAGGT__GGTT__
13._RUQ_1621
___GGCGCCAGGG__GGTT__
 4344454647484950515253545556
_Input profile
GGTTTTAAGGAACCCCGGAAGGCTTTGG
1._GC-05-011-1-11
GGTTTTAAGGAACCCCGGAAGGCTTTGG
2._GC-05-011-1-11
GGTTTTAAGGAACCCCGGAAGGCTTTGG
3._RUQ_1059
GGTT__GG_______TT-
4._PA_121_[PER]
__TT________CT__
5._PA_121_[PER]
__TT________CT__
6._PA_121_[PER]
__TT________CT__
7._ICS_1
__TT________CT__
8._RUQ_1059
__TT________CT__
9._PA_121_[PER]
__TT________CT__
10._PA_121_[PER]
__TT________CT__
11._PA_121_[PER]
__TT________CT__
12._RUQ_952
GGTT__GG_______TT-
13._RUQ_1621
GGTT__GG_______TT-
 5758596061626364656667686970
_Input profile
CCCTCTAAGGGGACAAGGGGAGCCCCAA
1._GC-05-011-1-11
CCCTCTAAGGGGACAAGGGGAGCCCCAA
2._GC-05-011-1-11
CCCTCTAAGGGGACAAGGGGAGCCCCAA
3._RUQ_1059
CCCTCTAA_GGACAAGGGGAG___
4._PA_121_[PER]
CC_CTAAGG_ACAAGGGG___AA
5._PA_121_[PER]
CC_CTAAGG_ACAAGGGG___AA
6._PA_121_[PER]
CC_CTAAGG_ACAAGGGG___AA
7._ICS_1
CC_CTAAGG_ACAAGGGG___AA
8._RUQ_1059
CC_CTAAGG_ACAAGGGG___AA
9._PA_121_[PER]
CC_CTAAGG_ACAAGGGG___AA
10._PA_121_[PER]
CC_CTAAGG_ACAAGGGG___AA
11._PA_121_[PER]
__CTAAGG_ACAAGGGG___AA
12._RUQ_952
CCCTCTAA_GGACGGGGGGAG___
13._RUQ_1621
CCCTCTAA_GGACGGGGGGAG___
 7172737475767778798081828384
_Input profile
TTCCAACCACAGAAGGCCATAATTTTCC
1._GC-05-011-1-11
TTCCAACCACAGAAGGCCATAATTTTCC
2._GC-05-011-1-11
TTCCAACCACAGAAGGCCATAATTTTCC
3._RUQ_1059
______AAGG__AATT__
4._PA_121_[PER]
TT_____AAGG___TTTTCC
5._PA_121_[PER]
TT_____AAGG___TTTTCC
6._PA_121_[PER]
TT_____AAGG___TTTTCC
7._ICS_1
TT_____AAGG___TTTTCC
8._RUQ_1059
TT_____AAGG___TTTTCC
9._PA_121_[PER]
TT_____AAGG___TTTTCC
10._PA_121_[PER]
TT_____AAGG___TTTTCC
11._PA_121_[PER]
TT_____AAGG___TTTT_
12._RUQ_952
______AAGG__AATT__
13._RUQ_1621
______ACCC__AATT__
 8586878889909192      
_Input profile
CTAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
1._GC-05-011-1-11
CTAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
2._GC-05-011-1-11
CTAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
3._RUQ_1059
_AGCCCCTT___X_XX_XX_XX_XX_XX_X
4._PA_121_[PER]
_AG_CCTTTT__X_XX_XX_XX_XX_XX_X
5._PA_121_[PER]
_AG_CCTTTT__X_XX_XX_XX_XX_XX_X
6._PA_121_[PER]
_AG_CCTTTT__X_XX_XX_XX_XX_XX_X
7._ICS_1
_AG_CCTTTT__X_XX_XX_XX_XX_XX_X
8._RUQ_1059
_AG_CCTTTT__X_XX_XX_XX_XX_XX_X
9._PA_121_[PER]
_AG_CCTTTT__X_XX_XX_XX_XX_XX_X
10._PA_121_[PER]
_AG_CCTTTT__X_XX_XX_XX_XX_XX_X
11._PA_121_[PER]
_AG_CCTTTT__X_XX_XX_XX_XX_XX_X
12._RUQ_952
_AACCCCTT___X_XX_XX_XX_XX_XX_X
13._RUQ_1621
_AACCCCTT___X_XX_XX_XX_XX_XX_X

Input profile: PA_121_[PER] GC-05-011-1-11

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

1._PA_121_[PER] GC-05-011-1-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._PA_121_[PER] GC-05-011-1-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._PA_121_[PER] RUQ_1059

identical
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._PA_121_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5111 5 > FP
 Dapeng Zhang, 2016

5._PA_121_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5111 1 > FP
 Dapeng Zhang, 2016

6._PA_121_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5111 3
 Dapeng Zhang, 2016

7._ICS_1

identical
39 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

8._PA_121_[PER] RUQ_1059

identical
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._PA_121_[PER]

identical
39 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P60 102
 Dapeng Zhang, 2016

10._PA_121_[PER]

identical
39 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: C0233
 Dapeng Zhang, 2016

11._PA_121_[PER]

identical
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D393
 Dapeng Zhang, 2016

12._PA_289_[PER] RUQ_952

96.3 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._PA_299_[PER] RUQ_1621

90 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1520 55TcSNP799
56TcSNP899 57TcSNP226 58TcSNP1439 59TcSNP1442 60TcSNP193
61TcSNP25 62TcSNP364 63TcSNP144 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240