SNP Profiles matching PA 121 [PER]

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 Key

 1234567891011121314
_Input profile
AAACCTCCGGAGCCCCCCCCGGTTCCTT
1._GC-05-011-1-11
AAACCTCCGGAGCCCCCCCCGGTTCCTT
2._GC-05-011-1-11
AAACCTCCGGAGCCCCCCCCGGTTCCTT
3._RUQ_1059
____CTCC____CC__CC____TTCC__
4._PA_121_[PER]
AAACCTCC________CCCCGG__CC__
5._PA_121_[PER]
AAACCTCC________CCCCGG__CC__
6._PA_121_[PER]
AAACCTCC________CCCCGG__CC__
7._ICS_1
AAACCTCC________CCCCGG__CC__
8._RUQ_1059
AAACCTCC________CCCCGG__CC__
9._PA_121_[PER]
AAACCTCC________CCCCGG__CC__
10._PA_121_[PER]
AAACCTCC________CCCCGG__CC__
11._PA_121_[PER]
AAACCTCC________CCCCGG__CC__
12._RUQ_952
____CTCC____CC__CC____TTCC__
13._RUQ_1621
____CTCC____CT__CC____TTCC__
 1516171819202122232425262728
_Input profile
AACCGGCGCCCGCTAATTGGATAACCGG
1._GC-05-011-1-11
AACCGGCGCCCGCTAATTGGATAACCGG
2._GC-05-011-1-11
AACCGGCGCCCGCTAATTGGATAACCGG
3._RUQ_1059
________CC________GG__AACCGG
4._PA_121_[PER]
____GG____CG________ATAA__GG
5._PA_121_[PER]
____GG____CG________ATAA__GG
6._PA_121_[PER]
____GG____CG________ATAA__GG
7._ICS_1
____GG____CG________ATAA__GG
8._RUQ_1059
____GG____CG________ATAA__GG
9._PA_121_[PER]
____GG____CG________ATAA__GG
10._PA_121_[PER]
____GG____CG________ATAA__GG
11._PA_121_[PER]
____GG____CG________ATAA__GG
12._RUQ_952
________CC________GG__AACCGG
13._RUQ_1621
________CC________GG__AACCGG
 2930313233343536373839404142
_Input profile
AATTGTGGCGCCAGGTGGTTGGTTAGCC
1._GC-05-011-1-11
AATTGTGGCGCCAGGTGGTTGGTTAGCC
2._GC-05-011-1-11
AATTGTGGCGCCAGGTGGTTGGTTAGCC
3._RUQ_1059
______GGCGCCAGGT____GGTT____
4._PA_121_[PER]
AA______CG__AGGT____GG______
5._PA_121_[PER]
AA______CG__AGGT____GG______
6._PA_121_[PER]
AA______CG__AGGT____GG______
7._ICS_1
AA______CG__AGGT____GG______
8._RUQ_1059
AA______CG__AGGT____GG______
9._PA_121_[PER]
AA______CG__AGGT____GG______
10._PA_121_[PER]
AA______CG__AGGT____GG______
11._PA_121_[PER]
AA______CG__AGGT____GG______
12._RUQ_952
______GGCGCCAGGT____GGTT____
13._RUQ_1621
______GGCGCCAGGG____GGTT____
 4344454647484950515253545556
_Input profile
GGTTTTAAGGAACCCCGGAAGGCTTTGG
1._GC-05-011-1-11
GGTTTTAAGGAACCCCGGAAGGCTTTGG
2._GC-05-011-1-11
GGTTTTAAGGAACCCCGGAAGGCTTTGG
3._RUQ_1059
GGTT____GG______________TT__
4._PA_121_[PER]
____TT________________CT____
5._PA_121_[PER]
____TT________________CT____
6._PA_121_[PER]
____TT________________CT____
7._ICS_1
____TT________________CT____
8._RUQ_1059
____TT________________CT____
9._PA_121_[PER]
____TT________________CT____
10._PA_121_[PER]
____TT________________CT____
11._PA_121_[PER]
____TT________________CT____
12._RUQ_952
GGTT____GG______________TT__
13._RUQ_1621
GGTT____GG______________TT__
 5758596061626364656667686970
_Input profile
CCCTCTAAGGGGACAAGGGGAGCCCCAA
1._GC-05-011-1-11
CCCTCTAAGGGGACAAGGGGAGCCCCAA
2._GC-05-011-1-11
CCCTCTAAGGGGACAAGGGGAGCCCCAA
3._RUQ_1059
CCCTCTAA__GGACAAGGGGAG______
4._PA_121_[PER]
CC__CTAAGG__ACAAGGGG______AA
5._PA_121_[PER]
CC__CTAAGG__ACAAGGGG______AA
6._PA_121_[PER]
CC__CTAAGG__ACAAGGGG______AA
7._ICS_1
CC__CTAAGG__ACAAGGGG______AA
8._RUQ_1059
CC__CTAAGG__ACAAGGGG______AA
9._PA_121_[PER]
CC__CTAAGG__ACAAGGGG______AA
10._PA_121_[PER]
CC__CTAAGG__ACAAGGGG______AA
11._PA_121_[PER]
____CTAAGG__ACAAGGGG______AA
12._RUQ_952
CCCTCTAA__GGACGGGGGGAG______
13._RUQ_1621
CCCTCTAA__GGACGGGGGGAG______
 7172737475767778798081828384
_Input profile
TTCCAACCACAGAAGGCCATAATTTTCC
1._GC-05-011-1-11
TTCCAACCACAGAAGGCCATAATTTTCC
2._GC-05-011-1-11
TTCCAACCACAGAAGGCCATAATTTTCC
3._RUQ_1059
____________AAGG____AATT____
4._PA_121_[PER]
TT__________AAGG______TTTTCC
5._PA_121_[PER]
TT__________AAGG______TTTTCC
6._PA_121_[PER]
TT__________AAGG______TTTTCC
7._ICS_1
TT__________AAGG______TTTTCC
8._RUQ_1059
TT__________AAGG______TTTTCC
9._PA_121_[PER]
TT__________AAGG______TTTTCC
10._PA_121_[PER]
TT__________AAGG______TTTTCC
11._PA_121_[PER]
TT__________AAGG______TTTT__
12._RUQ_952
____________AAGG____AATT____
13._RUQ_1621
____________ACCC____AATT____
 8586878889909192      
_Input profile
CTAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
1._GC-05-011-1-11
CTAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
2._GC-05-011-1-11
CTAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
3._RUQ_1059
__AGCCCCTT______X_XX_XX_XX_XX_XX_X
4._PA_121_[PER]
__AG__CCTTTT____X_XX_XX_XX_XX_XX_X
5._PA_121_[PER]
__AG__CCTTTT____X_XX_XX_XX_XX_XX_X
6._PA_121_[PER]
__AG__CCTTTT____X_XX_XX_XX_XX_XX_X
7._ICS_1
__AG__CCTTTT____X_XX_XX_XX_XX_XX_X
8._RUQ_1059
__AG__CCTTTT____X_XX_XX_XX_XX_XX_X
9._PA_121_[PER]
__AG__CCTTTT____X_XX_XX_XX_XX_XX_X
10._PA_121_[PER]
__AG__CCTTTT____X_XX_XX_XX_XX_XX_X
11._PA_121_[PER]
__AG__CCTTTT____X_XX_XX_XX_XX_XX_X
12._RUQ_952
__AACCCCTT______X_XX_XX_XX_XX_XX_X
13._RUQ_1621
__AACCCCTT______X_XX_XX_XX_XX_XX_X

Input profile: PA_121_[PER] GC-05-011-1-11

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

1._PA_121_[PER] GC-05-011-1-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._PA_121_[PER] GC-05-011-1-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._PA_121_[PER] RUQ_1059

identical
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._PA_121_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5111 5 > FP
 Dapeng Zhang, 2016

5._PA_121_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5111 1 > FP
 Dapeng Zhang, 2016

6._PA_121_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5111 3
 Dapeng Zhang, 2016

7._ICS_1

identical
39 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

8._PA_121_[PER] RUQ_1059

identical
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._PA_121_[PER]

identical
39 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P60 102
 Dapeng Zhang, 2016

10._PA_121_[PER]

identical
39 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: C0233
 Dapeng Zhang, 2016

11._PA_121_[PER]

identical
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D393
 Dapeng Zhang, 2016

12._PA_289_[PER] RUQ_952

96.3 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._PA_299_[PER] RUQ_1621

90 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1520 55TcSNP799
56TcSNP899 57TcSNP226 58TcSNP1439 59TcSNP1442 60TcSNP193
61TcSNP25 62TcSNP364 63TcSNP144 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240