SNP Profiles matching PA 121 [PER]

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 Key

 1234567891011121314
_Input profile
ATAATTCCAGGGCCCCCCCCAGTTCCCC
1._GC-05-164-4-17
ATAATTCCAGGGCCCCCCCCAGTTCCCC
2._CRU_101
ATAATTCC____CCCCAG_CC_
3._CRU_101
ATAATTCC____CCCCAG_CC_
4._CRU_101
ATAATTCC____CCCCAG_CC_
5._CRU_101
ATAATTCC____CCCCAG_CC_
6._CRU_101
ATAATTCC____CCCCAG_CC_
7._PA_121_[PER]
ATAATTCC____CCCCAG_CC_
8._CRU_101
ATAATTCC_____CCAG_CC_
9._RUQ_1627
__TTCC__CT_CC__TTCC_
 1516171819202122232425262728
_Input profile
AACCAAAGCGCGGGCTAACCGGTTAACC
1._GC-05-164-4-17
AACCAAAGCGCGGGCTAACCGGTTAACC
2._CRU_101
___AG__GG____TTAA_
3._CRU_101
___AG__GG____TTAA_
4._CRU_101
___AG__GG____TTAA_
5._CRU_101
___AG__GG____TTAA_
6._CRU_101
___AG__GG____TTAA_
7._PA_121_[PER]
___AG__GG____TTAA_
8._CRU_101
___AG__GG____TTAA_
9._RUQ_1627
_____CG____GG_AACC
 2930313233343536373839404142
_Input profile
GGAATTGGAACCCCAGTTGGTTAGTTAA
1._GC-05-164-4-17
GGAATTGGAACCCCAGTTGGTTAGTTAA
2._CRU_101
GGAA___CC_AGTT__AG__
3._CRU_101
GGAA___CC_AGTT__AG__
4._CRU_101
GGAA___CC_AGTT__AG__
5._CRU_101
GGAA___CC_AGTT__AG__
6._CRU_101
GGAA___CC_AGTT__AG__
7._PA_121_[PER]
GGAA___CC_AGTT__AG__
8._CRU_101
GGAA___CC_AGTT__AG__
9._RUQ_1627
GG___AACCCCAGTT__AGTT_
 4344454647484950515253545556
_Input profile
CGGGTTCTAAGGAACCACGGGGTTTTCT
1._GC-05-164-4-17
CGGGTTCTAAGGAACCACGGGG_TTCT
2._CRU_101
___CT________TTCT
3._CRU_101
___CT________TTCT
4._CRU_101
___CT________TTCT
5._CRU_101
___CT________TTCT
6._CRU_101
___CT________TTCT
7._PA_121_[PER]
___CT________TTCT
8._CRU_101
___CT________TT_
9._RUQ_1627
_GGTT__GG_____CCTT_
 5758596061626364656667686970
_Input profile
TTAACCTTCTAACGGGCCAAGTGGAGCT
1._GC-05-164-4-17
TTAACCTTCTAACGGGCCAAGTGGAGCT
2._CRU_101
__CC_CTAACG_CCAAGTGG__
3._CRU_101
__CC_CTAACG_CCAAGTGG__
4._CRU_101
__CC_CTAACG_CCAAGTGG__
5._CRU_101
__CC_CTAACG_CCAAGTGG__
6._CRU_101
__CC_CTAACG_CCAAGTGG__
7._PA_121_[PER]
__CC_CTAACG_CCAAGTGG__
8._CRU_101
____CTAACG_CCAAGTGG__
9._RUQ_1627
TTAACCTTCTAA_GGCCAAGTGGAG_
 7172737475767778798081828384
_Input profile
CCAACTACAGACAAAACCCGCCAAAATT
1._GC-05-164-4-17
CCAACTACAGACAAAACCCGCCAAAATT
2._CRU_101
_AACT_____CCCG___TT
3._CRU_101
_AACT_____CCCG___TT
4._CRU_101
_AACT_____CCCG___TT
5._CRU_101
_AACT_____CCCG___TT
6._CRU_101
_AACT_____CCCG___TT
7._PA_121_[PER]
_AACT_____CCCG___TT
8._CRU_101
_AGCT_____CCCG___TT
9._RUQ_1627
________CCCG__AATT
 85868788899091929394    
_Input profile
TTCTTTAGTTCCTTCTAAGGX_XX_XX_XX_X
1._GC-05-164-4-17
TTCTTTAGTTCCTTCTAAGGX_XX_XX_XX_X
2._CRU_101
TTCT_AG_CCTTCT__X_XX_XX_XX_X
3._CRU_101
TTCT_AG_CCTTCT__X_XX_XX_XX_X
4._CRU_101
TTCT_AG_CCTTCT__X_XX_XX_XX_X
5._CRU_101
TTCT_AG_CCTTCT__X_XX_XX_XX_X
6._CRU_101
TTCT_AG_CCTTCT__X_XX_XX_XX_X
7._PA_121_[PER]
TTCT_AG_CCTTCT__X_XX_XX_XX_X
8._CRU_101
TT__AG_CCTT___X_XX_XX_XX_X
9._RUQ_1627
___AGTTCCTT___X_XX_XX_XX_X

Input profile: PA_121_[PER] GC-05-011-1-11

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

1._CRU_101 GC-05-164-4-17

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._CRU_101

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5417 4 > FP
 Dapeng Zhang, 2016

3._CRU_101

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5417 3 > FP
 Dapeng Zhang, 2016

4._CRU_101

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5417 2 > FP
 Dapeng Zhang, 2016

5._CRU_101

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5417 1 > FP
 Dapeng Zhang, 2016

6._CRU_101

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5417 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

7._PA_121_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5111 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

8._CRU_101

98.6 %
35 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D91
 Dapeng Zhang, 2016

9._CRU_101 RUQ_1627

96.5 %
43 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240