SNP Profiles matching PA-121

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 Key

 1234567891011121314
_Input profile
AAACCTCCGGAGCCCCCCCCGGTTCCTT
1._GC-05-011-1-11
AAACCTCCGGAGCCCCCCCCGGTTCCTT
2._GC-05-011-1-11
AAACCTCCGGAGCCCCCCCCGGTTCCTT
3._RUQ_1059
__CTCC__CC_CC__TTCC_
4._PA_121_[PER]
AAACCTCC____CCCCGG_CC_
5._PA_121_[PER]
AAACCTCC____CCCCGG_CC_
6._ICS_1
AAACCTCC____CCCCGG_CC_
7._RUQ_1059
AAACCTCC____CCCCGG_CC_
8._PA_121_[PER]
AAACCTCC____CCCCGG_CC_
9._PA_121_[PER]
AAACCTCC____CCCCGG_CC_
10._PA_121_[PER]
AAACCTCC____CCCCGG_CC_
11._PA_121_[PER]
AAACCTCC____CCCCGG_CC_
12._RUQ_952
__CTCC__CC_CC__TTCC_
13._RUQ_1621
__CTCC__CT_CC__TTCC_
 1516171819202122232425262728
_Input profile
AACCGGCGCCCGCTAATTGGATAACCGG
1._GC-05-011-1-11
AACCGGCGCCCGCTAATTGGATAACCGG
2._GC-05-011-1-11
AACCGGCGCCCGCTAATTGGATAACCGG
3._RUQ_1059
____CC____GG_AACCGG
4._PA_121_[PER]
__GG__CG____ATAA_GG
5._PA_121_[PER]
__GG__CG____ATAA_GG
6._ICS_1
__GG__CG____ATAA_GG
7._RUQ_1059
__GG__CG____ATAA_GG
8._PA_121_[PER]
__GG__CG____ATAA_GG
9._PA_121_[PER]
__GG__CG____ATAA_GG
10._PA_121_[PER]
__GG__CG____ATAA_GG
11._PA_121_[PER]
__GG__CG____ATAA_GG
12._RUQ_952
____CC____GG_AACCGG
13._RUQ_1621
____CC____GG_AACCGG
 2930313233343536373839404142
_Input profile
AATTGTGGCGCCAGGTGGTTGGTTAGCC
1._GC-05-011-1-11
AATTGTGGCGCCAGGTGGTTGGTTAGCC
2._GC-05-011-1-11
AATTGTGGCGCCAGGTGGTTGGTTAGCC
3._RUQ_1059
___GGCGCCAGGT__GGTT__
4._PA_121_[PER]
AA___CG_AGGT__GG___
5._PA_121_[PER]
AA___CG_AGGT__GG___
6._ICS_1
AA___CG_AGGT__GG___
7._RUQ_1059
AA___CG_AGGT__GG___
8._PA_121_[PER]
AA___CG_AGGT__GG___
9._PA_121_[PER]
AA___CG_AGGT__GG___
10._PA_121_[PER]
AA___CG_AGGT__GG___
11._PA_121_[PER]
AA___CG_AGGT__GG___
12._RUQ_952
___GGCGCCAGGT__GGTT__
13._RUQ_1621
___GGCGCCAGGG__GGTT__
 4344454647484950515253545556
_Input profile
GGTTTTAAGGAACCCCGGAAGGCCCTTT
1._GC-05-011-1-11
GGTTTTAAGGAACCCCGGAAGGCCCTTT
2._GC-05-011-1-11
GGTTTTAAGGAACCCCGGAAGG_CTTT
3._RUQ_1059
GGTT__GG______CC_TT
4._PA_121_[PER]
__TT________CCCT_
5._PA_121_[PER]
__TT________CCCT_
6._ICS_1
__TT________CCCT_
7._RUQ_1059
__TT________CCCT_
8._PA_121_[PER]
__TT________CCCT_
9._PA_121_[PER]
__TT________CCCT_
10._PA_121_[PER]
__TT_________CT_
11._PA_121_[PER]
__TT________CCCT_
12._RUQ_952
GGTT__GG______CT_TT
13._RUQ_1621
GGTT__GG______CC_TT
 5758596061626364656667686970
_Input profile
GGCCCTCTAAGGGGACAAGGGGAGCCCC
1._GC-05-011-1-11
GGCCCTCTAAGGGGACAAGGGGAGCCCC
2._GC-05-011-1-11
GGCCCTCTAAGGGGACAAGGGGAGCCCC
3._RUQ_1059
-CCCTCTAA_GGACAAGGGGAG__
4._PA_121_[PER]
_CC_CTAAGG_ACAAGGGG___
5._PA_121_[PER]
_CC_CTAAGG_ACAAGGGG___
6._ICS_1
_CC_CTAAGG_ACAAGGGG___
7._RUQ_1059
_CC_CTAAGG_ACAAGGGG___
8._PA_121_[PER]
_CC_CTAAGG_ACAAGGGG___
9._PA_121_[PER]
_CC_CTAAGG_ACAAGGGG___
10._PA_121_[PER]
_CC_CTAAGG_ACAAGGGG___
11._PA_121_[PER]
___CTAAGG_ACAAGGGG___
12._RUQ_952
-CCCTCTAA_GGACGGGGGGAG__
13._RUQ_1621
-CCCTCTAA_GGACGGGGGGAG__
 7172737475767778798081828384
_Input profile
AATTCCAACCACAGAAGGCCATAATTTT
1._GC-05-011-1-11
AATTCCAACCACAGAAGGCCATAATTTT
2._GC-05-011-1-11
AATTCCAACCACAGAAGGCCATAATTTT
3._RUQ_1059
_______AAGG__AATT_
4._PA_121_[PER]
AATT_____AAGG___TTTT
5._PA_121_[PER]
AATT_____AAGG___TTTT
6._ICS_1
AATT_____AAGG___TTTT
7._RUQ_1059
AATT_____AAGG___TTTT
8._PA_121_[PER]
AATT_____AAGG___TTTT
9._PA_121_[PER]
AATT_____AAGG___TTTT
10._PA_121_[PER]
AATT_____AAGG___TTTT
11._PA_121_[PER]
AATT_____AAGG___TTTT
12._RUQ_952
_______AAGG__AATT_
13._RUQ_1621
_______ACCC__AATT_
 858687888990919293     
_Input profile
CCCTAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
1._GC-05-011-1-11
CCCTAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
2._GC-05-011-1-11
CCCTAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
3._RUQ_1059
__AGCCCCTT___X_XX_XX_XX_XX_X
4._PA_121_[PER]
CC_AG_CCTTTT__X_XX_XX_XX_XX_X
5._PA_121_[PER]
CC_AG_CCTTTT__X_XX_XX_XX_XX_X
6._ICS_1
CC_AG_CCTTTT__X_XX_XX_XX_XX_X
7._RUQ_1059
CC_AG_CCTTTT__X_XX_XX_XX_XX_X
8._PA_121_[PER]
CC_AG_CCTTTT__X_XX_XX_XX_XX_X
9._PA_121_[PER]
CC_AG_CCTTTT__X_XX_XX_XX_XX_X
10._PA_121_[PER]
CC_AG_CCTTTT__X_XX_XX_XX_XX_X
11._PA_121_[PER]
__AG_CCTTTT__X_XX_XX_XX_XX_X
12._RUQ_952
__AACCCCTT___X_XX_XX_XX_XX_X
13._RUQ_1621
__AACCCCTT___X_XX_XX_XX_XX_X

Input profile: PA_121_[PER] GC-05-011-1-11

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

1._PA_121_[PER] GC-05-011-1-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._PA_121_[PER] GC-05-011-1-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

3._PA_121_[PER] RUQ_1059

identical
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._PA_121_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5111 1 > FP
 Dapeng Zhang, 2016

5._PA_121_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5111 3
 Dapeng Zhang, 2016

6._ICS_1

identical
40 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

7._PA_121_[PER] RUQ_1059

identical
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

8._PA_121_[PER]

identical
40 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P60 102
 Dapeng Zhang, 2016

9._PA_121_[PER]

identical
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: C0233
 Dapeng Zhang, 2016

10._PA_121_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5111 5 > FP
 Dapeng Zhang, 2016

11._PA_121_[PER]

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D393
 Dapeng Zhang, 2016

12._PA_289_[PER] RUQ_952

95.1 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._PA_299_[PER] RUQ_1621

90.2 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240